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LOC110815409 syntaxin-43 [ Carica papaya (papaya) ]

Gene ID: 110815409, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110815409
Gene description
syntaxin-43
Gene type
protein coding
RefSeq status
MODEL
Organism
Carica papaya
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Genomic context

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See LOC110815409 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Papaya1.0 (GCF_000150535.2) Unplaced Scaffold NW_019014644.1 (780669..786613)

NW_019014644.1Genomic Context describing neighboring genes Neighboring gene wall-associated receptor kinase-like 20 Neighboring gene kinesin-like protein KIN-14G Neighboring gene exonuclease DPD1, chloroplastic/mitochondrial Neighboring gene GATA transcription factor 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019014644 Unplaced Scaffold Reference Papaya1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carica papaya Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Papaya1.0 Primary Assembly

Genomic

  1. NW_019014644.1 Reference Papaya1.0 Primary Assembly

    Range
    780669..786613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022043202.1 → XP_021898894.1  syntaxin-43

    Conserved Domains (2) summary
    cd15845
    Location:196 → 252
    SNARE_syntaxin16; SNARE motif of syntaxin 16
    cl26014
    Location:73 → 283
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
Nucleotide Protein
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