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LOC109885455 calcium/calmodulin-dependent protein kinase type II delta 2 chain-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109885455, updated on 18-Sep-2024

Summary

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Gene symbol
LOC109885455
Gene description
calcium/calmodulin-dependent protein kinase type II delta 2 chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC109885455 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022261984.1 (11215092..11269821)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018093129.1 (55141..66403, complement)

NW_022261984.1Genomic Context describing neighboring genes Neighboring gene vegetative cell wall protein gp1-like Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene uncharacterized LOC116360127 Neighboring gene uncharacterized LOC109885850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent protein kinase type II delta 2 chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022261984.1 Reference Okis_V2 Primary Assembly

    Range
    11215092..11269821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031814593.1 → XP_031670453.1  calcium/calmodulin-dependent protein kinase type II delta 2 chain-like

    UniProtKB/TrEMBL
    A0A8C7KGY2
    Conserved Domains (2) summary
    cd14086
    Location:6 → 233
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:360 → 487
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
Nucleotide Protein
Heading Accession and Version

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