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HDAC10 histone deacetylase 10 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102940431, updated on 10-Mar-2024

Summary

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Gene symbol
HDAC10
Gene description
histone deacetylase 10
Locus tag
UY3_04260
See related
EnsemblRapid:ENSCMYG00015006706
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See HDAC10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (309718493..309756706)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (309718493..309752095)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 12 Neighboring gene secreted frizzled-related protein 2 Neighboring gene tubulin gamma complex component 6 Neighboring gene fibrinogen gamma chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyamine deacetylase HDAC10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    309718493..309756706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037889008.2 → XP_037744936.1  polyamine deacetylase HDAC10 isoform X1

    Conserved Domains (2) summary
    cd11683
    Location:20 → 356
    HDAC10; Histone deacetylase 10
    cl17011
    Location:556 → 646
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_037889009.2 → XP_037744937.1  polyamine deacetylase HDAC10 isoform X2

    Conserved Domains (2) summary
    cd11683
    Location:20 → 356
    HDAC10; Histone deacetylase 10
    cl17011
    Location:538 → 628
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  3. XM_037889010.2 → XP_037744938.1  polyamine deacetylase HDAC10 isoform X4

    Conserved Domains (1) summary
    cl17011
    Location:19 → 276
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  4. XM_043550547.1 → XP_043406482.1  polyamine deacetylase HDAC10 isoform X3

    Related
    ENSCMYP00015010411.1, ENSCMYT00015012588.1
    Conserved Domains (1) summary
    cl17011
    Location:31 → 318
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
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