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tmlhe trimethyllysine hydroxylase, epsilon [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102696971, updated on 3-Dec-2024

Summary

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Gene symbol
tmlhe
Gene description
trimethyllysine hydroxylase, epsilon
See related
Ensembl:ENSLOCG00000013710
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See tmlhe in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 8 NC_090703.1 (36234115..36247869, complement)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG7 NC_023185.1 (22069828..22083588)

Chromosome 8 - NC_090703.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD83 Neighboring gene small nucleolar RNA SNORD17 Neighboring gene dyskeratosis congenita 1, dyskerin Neighboring gene TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene 5-hydroxytryptamine receptor 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables trimethyllysine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimethyllysine dioxygenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090703.1 Reference fLepOcu1.hap2

    Range
    36234115..36247869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006632647.3 → XP_006632710.3  trimethyllysine dioxygenase, mitochondrial

    UniProtKB/TrEMBL
    W5N8E5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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