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RXRA retinoid X receptor alpha [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100674208, updated on 11-Apr-2024

Summary

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Gene symbol
RXRA
Gene description
retinoid X receptor alpha
See related
EnsemblRapid:ENSLAFG00000012239
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See RXRA in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 9 NC_087350.1 (119898920..120003785)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573610.1 (304006..321889)

Chromosome 9 - NC_087350.1Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene WD repeat domain 5 Neighboring gene uncharacterized LOC135232328 Neighboring gene collagen type V alpha 1 chain Neighboring gene ficolin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087350.1 Reference mLoxAfr1.hap2

    Range
    119898920..120003785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064290630.1 → XP_064146700.1  retinoic acid receptor RXR-alpha isoform X2

  2. XM_064290633.1 → XP_064146703.1  retinoic acid receptor RXR-alpha isoform X5

    Related
    ENSLAFP00000010226.4, ENSLAFT00000012239.4

  3. XM_064290629.1 → XP_064146699.1  retinoic acid receptor RXR-alpha isoform X1

    Related
    ENSLAFP00000037727.1, ENSLAFT00000056885.1

  4. XM_064290631.1 → XP_064146701.1  retinoic acid receptor RXR-alpha isoform X3

  5. XM_064290632.1 → XP_064146702.1  retinoic acid receptor RXR-alpha isoform X4

RNA

  1. XR_010322881.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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