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LOC100186501 chondroitin sulfate synthase 3-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100186501, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100186501
Gene description
chondroitin sulfate synthase 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100186501 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190397.2 (25108..47311, complement)

NW_004190397.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100176286 Neighboring gene uncharacterized LOC100185736 Neighboring gene asparagine--oxo-acid transaminase-like Neighboring gene soluble guanylate cyclase 88E-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004190397 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190397.2 Reference KH Primary Assembly

    Range
    25108..47311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002122366.3 → XP_002122402.1  chondroitin sulfate synthase 3-like

    UniProtKB/TrEMBL
    F6Z6T5
    Conserved Domains (2) summary
    pfam05679
    Location:224 → 757
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:155 → 256
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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