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21 pages, 16188 KiB  
Article
Classification of Karst Rocky Desertification Levels in Jinsha County Using a Feature Space Method Based on SDGSAT-1 Multispectral Data
by Qi Chen, Han Fu, Xiaoming Li, Xiaochuan Qin and Lin Yan
Remote Sens. 2024, 16(24), 4786; https://doi.org/10.3390/rs16244786 - 22 Dec 2024
Viewed by 285
Abstract
Karst rocky desertification (KRD) is a significant issue that affects the ecological and economic sustainability of southwest China. Obtaining the accurate distribution of different levels of KRD can provide decision-making support for the effective management of KRD. The Sustainable Development Goals Science Satellite [...] Read more.
Karst rocky desertification (KRD) is a significant issue that affects the ecological and economic sustainability of southwest China. Obtaining the accurate distribution of different levels of KRD can provide decision-making support for the effective management of KRD. The Sustainable Development Goals Science Satellite 1 (SDGSAT-1) is the world’s first scientific satellite serving the 2030 Agenda for Sustainable Development of the United Nations, and is dedicated to developing high-resolution, multi-scale, global public datasets to support policy and decision-making support systems for sustainable development. SDGSAT-1 multispectral data provide detailed ground information with a spatial resolution of 10 m and a rich spectral resolution. In this study, we combined the red-modified carbonate rock index (RCRI, an index that characterizes the degree of carbonate rock exposure) and the normalized difference red edge index (NDRE, an index that characterizes the degree of vegetation coverage) to propose a novel feature space method based on SDGSAT-1 multispectral data to classify the different levels of KRD in the Jinsha County of Guizhou Province, a representative region with significant KRD in southwest China. This method effectively identified different levels of KRD with an overall classification accuracy of 87%. This was 20% higher than that of the grading index method, indicating that SDGSAT-1 multispectral data have promising potential for KRD classification. In this study, we offer a new insight into the classification of KRD and a greater quantity of remote-sensing data to monitor KRD over a wider area and for a longer period of time, contributing to the economic development and environmental protection of KRD areas. Full article
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<p>Overview map of the study area: (<b>a</b>) location of Jinsha County; and (<b>b</b>) digital elevation model of Jinsha County [<a href="#B37-remotesensing-16-04786" class="html-bibr">37</a>].</p>
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<p>Overall workflow of this study. MSI: multispectral imager; UAV: unmanned aerial vehicle; DEM: digital elevation model; KRDI: karst rocky desertification monitoring index; KRD: karst rocky desertification.</p>
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<p>Reflectance spectral curves of carbonate rocks and vegetation ascertained from SDGSAT-1 MSI data.</p>
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<p>Principles of feature space [<a href="#B24-remotesensing-16-04786" class="html-bibr">24</a>,<a href="#B25-remotesensing-16-04786" class="html-bibr">25</a>,<a href="#B26-remotesensing-16-04786" class="html-bibr">26</a>]. Points A and B represent areas exhibiting low levels of KRD, whereas points C and D represent areas with high levels of KRD.</p>
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<p>Feature space from SDGSAT-1 MSI data. The straight line (y) represents the baseline, which is perpendicular to the line that was fitted to the rock and vegetation indices. The elliptical profiles represent the grading boundaries for different levels of KRD, with the same level of KRD lying between the two profiles.</p>
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<p>Distribution of sample points: (<b>a</b>) overall distribution of sample sites; and (<b>b</b>,<b>c</b>) local graphs of sampling points.</p>
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<p>KRD classification results: (<b>a</b>) classification result based on the RCRI–NDRE feature space method; (<b>b</b>) local magnification of the results of the KRD. (1), (2), (3) and (4) are the areas where KRD is more concentrated; (<b>c</b>) sketch map of the slope of Jinsha County; and (<b>d</b>) linear regression of the slope with KRD levels.</p>
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<p>Statistical results of areas of different levels of KRD in Jinsha County obtained using the RCRI–NDRE feature space method.</p>
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<p>Distribution of KRD in Dafang County with all six levels of KRD (No, Potential, Mild, Moderate, and Severe).</p>
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16 pages, 6401 KiB  
Article
Estimation of Water Interception of Winter Wheat Canopy Under Sprinkler Irrigation Using UAV Image Data
by Xueqing Zhou, Haijun Liu and Lun Li
Water 2024, 16(24), 3609; https://doi.org/10.3390/w16243609 - 15 Dec 2024
Viewed by 456
Abstract
Canopy water interception is a key parameter to study the hydrological cycle, water utilization efficiency, and energy balance in terrestrial ecosystems. Especially in sprinkler-irrigated farmlands, the canopy interception further influences field energy distribution and microclimate, then plant transpiration and photosynthesis, and finally crop [...] Read more.
Canopy water interception is a key parameter to study the hydrological cycle, water utilization efficiency, and energy balance in terrestrial ecosystems. Especially in sprinkler-irrigated farmlands, the canopy interception further influences field energy distribution and microclimate, then plant transpiration and photosynthesis, and finally crop yield and water productivity. To reduce the field damage and increase measurement accuracy under traditional canopy water interception measurement, UAVs equipped with multispectral cameras were used to extract in situ crop canopy information. Based on the correlation coefficient (r), vegetative indices that are sensitive to canopy interception were screened out and then used to develop canopy interception models using linear regression (LR), random forest (RF), and back propagation neural network (BPNN) methods, and lastly these models were evaluated by root mean square error (RMSE) and mean relative error (MRE). Results show the canopy water interception is first closely related to relative normalized difference vegetation index (R△NDVI) with r of 0.76. The first seven indices with r from high to low are R△NDVI, reflectance values of the blue band (Blue), reflectance values of the near-infrared band (Nir), three-band gradient difference vegetation index (TGDVI), difference vegetation index (DVI), normalized difference red edge index (NDRE), and soil-adjusted vegetation index (SAVI) were chosen to develop canopy interception models. All the developed linear regression models based on three indices (R△NDVI, Blue, and NDRE), the RF model, and the BPNN model performed well in canopy water interception estimation (r: 0.53–0.76, RMSE: 0.18–0.27 mm, MRE: 21–27%) when the interception is less than 1.4 mm. The three methods underestimate the canopy interception by 18–32% when interception is higher than 1.4 mm, which could be due to the saturation of NDVI when leaf area index is higher than 4.0. Because linear regression is easy to perform, then the linear regression method with NDVI is recommended for canopy interception estimation of sprinkler-irrigated winter wheat. The proposed linear regression method and the R△NDVI index can further be used to estimate the canopy water interception of other plants as well as forest canopy. Full article
(This article belongs to the Special Issue Agricultural Water-Land-Plant System Engineering)
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<p>Map of experimental location and experimental field in this study.</p>
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<p>Heat map of correlation analysis between vegetation indices and canopy water interception. Note: * indicates the correlation coefficient between the two indices is significant at 0.05 level; ** indicates the relationship is significant at 0.01 level.</p>
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<p>Performance of linear regression models using unary and multiple vegetative indices. Panel (<b>a</b>) represents the linear model based on R<sub>△NDVI</sub> (model 7 in <a href="#water-16-03609-t003" class="html-table">Table 3</a>); (<b>b</b>) represents the model based on R<sub>△NDVI</sub> and Blue (model 8 in <a href="#water-16-03609-t003" class="html-table">Table 3</a>); (<b>c</b>) represents model based on R<sub>△NDVI</sub>, Blue, and NDRE (model 11 in <a href="#water-16-03609-t003" class="html-table">Table 3</a>).</p>
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<p>The estimated and measured canopy interceptions by RF model in the model developing and calibrating processes.</p>
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<p>The estimated and measured canopy interceptions by BP neural network model in the model developing and calibrating processes.</p>
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<p>The relationship between normalized difference vegetation index (NDVI) and leaf area index (LAI) in winter wheat.</p>
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18 pages, 5691 KiB  
Article
The Inversion of Rice Leaf Pigment Content: Using the Absorption Spectrum to Optimize the Vegetation Index
by Longfei Ma, Yuanjin Li, Ningge Yuan, Xiaojuan Liu, Yuyan Yan, Chaoran Zhang, Shenghui Fang and Yan Gong
Agriculture 2024, 14(12), 2265; https://doi.org/10.3390/agriculture14122265 - 11 Dec 2024
Viewed by 509
Abstract
The pigment content of rice leaves plays an important role in the growth and development of rice. The accurate and rapid assessment of the pigment content of leaves is of great significance for monitoring the growth status of rice. This study used the [...] Read more.
The pigment content of rice leaves plays an important role in the growth and development of rice. The accurate and rapid assessment of the pigment content of leaves is of great significance for monitoring the growth status of rice. This study used the Analytical Spectra Device (ASD) FieldSpec 4 spectrometer to measure the leaf reflectance spectra of 4 rice varieties during the entire growth period under 4 nitrogen application rates and simultaneously measured the leaf pigment content. The leaf’s absorption spectra were calculated based on the physical process of spectral transmission. An examination was conducted on the variations in pigment composition among distinct rice cultivars, alongside a thorough dissection of the interrelations and distinctions between leaf reflectance spectra and absorption spectra. Based on the vegetation index proposed by previous researchers in order to invert pigment content, the absorption spectrum was used to replace the original reflectance data to optimize the vegetation index. The results showed that the chlorophyll and carotenoid contents of different rice varieties showed regular changes during the whole growth period, and that the leaf absorption spectra of different rice varieties showed more obvious differences than reflectance spectra. After replacing the reflectance of pigment absorptivity-sensitive bands (400 nm, 550 nm, 680 nm, and red-edge bands) with absorptivities that would optimize the vegetation index, the correlation between the vegetation index, which combines absorptivity and reflectivity, and the chlorophyll and carotenoid contents of 4 rice varieties during the whole growth period was significantly improved. The model’s validation results indicate that the pigment inversion model, based on the improved vegetation index using absorption spectra, outperforms the traditional vegetation index-based pigment inversion model. The results of this study demonstrate the potential application of absorption spectroscopy in the quantitative inversion of crop phenotypes. Full article
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<p>The field experiment area and a map of its location in Wuhan, Hubei. The (<b>left</b>) figure illustrates the location map of Wuhan City in Hubei province, and the (<b>right</b>) diagram depicts the field experiment’s layout.</p>
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<p>(<b>a</b>) The ASD host and leaf clip for the determination of leaf spectra; (<b>b</b>) schematic diagram of the interaction between light and leaves during spectrometry; (<b>c</b>) schematic diagram of the aggregation effect of leaf epidermal cells on light.</p>
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<p>Absorption spectra and reflectance spectra of four varieties of rice under 1 N conditions at 101 days after transplanting (where ref represents reflectance spectra and abs represents absorption spectra).</p>
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<p>Change trends in the chlorophyll content in the leaves of four rice varieties throughout the growth period (four rice varieties: Chang jing you 582 (red), Feng liang you 4 (blue), Luo you 9348 (green), Zhong hua 11 (purple)). DAT represents days after transplanting; unit: days. Cab represents the total content of chlorophyll a and chlorophyll b; unit: mg/cm<sup>2</sup>.</p>
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<p>Change trends in the carotenoid content in leaves of four rice varieties throughout the growth period (four rice varieties: Chang jing you 582 (red); Feng liang you 4 (blue); Luo you 9348 (green); Zhong hua 11 (purple)). DAT represents days after transplanting; unit: days. Car represents the content of carotenoids, unit: mg/cm<sup>2</sup>.</p>
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<p>The correlation between pigment contents in leaves of four rice species and vegetation indexes (VIs): (<b>a</b>) the total content of chlorophyll a and chlorophyll b with vegetation indexes; (<b>b</b>) carotenoid contents with vegetation indexes. The picture shows the determination coefficient of the correlation between the pigment content of four rice varieties and each vegetation index. For Feng liang you 4 varieties, 700<sub>abs</sub>/490<sub>ref</sub> has the highest correlation with chlorophyll content, and CRI 515<sub>ref</sub> − 550<sub>abs</sub> × 770<sub>ref</sub> has the highest correlation with carotenoid content. For Chang jing you 582 varieties, 700<sub>abs</sub>/490<sub>ref</sub> has the highest correlation with chlorophyll content, and 550<sub>abs</sub>/550<sub>ref</sub> has the highest correlation with carotenoid content. For Luo you 9348 varieties, LCI<sub>abs</sub> has the highest correlation with chlorophyll content, and CRI 515<sub>ref</sub> − 550<sub>abs</sub> × 770<sub>ref</sub> has the highest correlation with carotenoid content. For Zhong hua 11 varieties, LCI<sub>ref</sub> has the highest correlation with chlorophyll content, and 550<sub>abs</sub>/550<sub>ref</sub> has the highest correlation with carotenoid content.</p>
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<p>Correlation scatter plots of selected vegetation indexes, pigment contents, and model verification accuracies. Feng liang you 4 variety: (<b>a</b>) Correlation diagram between chlorophyll content and 700<sub>abs</sub>/490<sub>ref</sub>. (<b>b</b>) Verification results of chlorophyll content inversion model. (<b>c</b>) Correlation diagram between carotenoid content and CRI515<sub>ref</sub> − 550<sub>abs</sub> × 770<sub>ref</sub>. (<b>d</b>) Verification results of carotenoid content inversion model. Chang jing you 582 varietI(<b>e</b>) Correlation diagram between chlorophyll content and 700<sub>abs</sub>/490<sub>ref</sub>. (<b>f</b>) Verification results of chlorophyll content inversion model. (<b>g</b>) Correlation diagram between carotenoid content and 550<sub>abs</sub>/550<sub>ref</sub>. (<b>h</b>) Verification results of carotenoid content inversion model. Luo you 9348 variety: (<b>i</b>) Correlation diagram between chlorophyll content and LCI<sub>abs</sub>. (<b>j</b>) Verification results of chlorophyll content inversion model. (<b>k</b>) Correlation diagram between carotenoid content and CRI515<sub>ref</sub> − 550<sub>abs</sub> × 770<sub>abs</sub>. (<b>l</b>) Verification results of carotenoid content inversion model. Zhong hua 11 variety: (<b>m</b>) Correlation diagram between chlorophyll content and LCI<sub>ref</sub>. (<b>n</b>) Verification results of chlorophyll content inversion model. (<b>o</b>) Correlation diagram between carotenoid content and 550<sub>abs</sub>/550<sub>ref</sub>. (<b>p</b>) Verification results of carotenoid content inversion model.</p>
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<p>The accuracy validation of pigment content inversion models based on traditional reflectance spectroscopy vegetation indices. Feng liang you 4: (<b>a</b>) The accuracy validation of the chlorophyll content inversion model. (<b>b</b>) The accuracy validation of the carotenoid content inversion model. Chang jing you 582: (<b>c</b>) The accuracy validation of the chlorophyll content inversion model. (<b>d</b>) The accuracy validation of the carotenoid content inversion model. Luo you 9348: I The accuracy validation of the chlorophyll content inversion model. (<b>f</b>) The accuracy validation of the carotenoid content inversion model. Zhong hua 11: (<b>g</b>) The accuracy validation of the chlorophyll content inversion model. (<b>h</b>) The accuracy validation of the carotenoid content inversion model.</p>
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<p>Temporal reflection spectra and absorption spectra of Zhong hua 11 under 1 N conditions (the number represents days after transplanting, ref represents reflectance spectra, and abs represents absorption spectra).</p>
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23 pages, 8533 KiB  
Article
Integrating Hyperspectral, Thermal, and Ground Data with Machine Learning Algorithms Enhances the Prediction of Grapevine Yield and Berry Composition
by Shaikh Yassir Yousouf Jewan, Deepak Gautam, Debbie Sparkes, Ajit Singh, Lawal Billa, Alessia Cogato, Erik Murchie and Vinay Pagay
Remote Sens. 2024, 16(23), 4539; https://doi.org/10.3390/rs16234539 - 4 Dec 2024
Viewed by 891
Abstract
Accurately predicting grapevine yield and quality is critical for optimising vineyard management and ensuring economic viability. Numerous studies have reported the complexity in modelling grapevine yield and quality due to variability in the canopy structure, challenges in incorporating soil and microclimatic factors, and [...] Read more.
Accurately predicting grapevine yield and quality is critical for optimising vineyard management and ensuring economic viability. Numerous studies have reported the complexity in modelling grapevine yield and quality due to variability in the canopy structure, challenges in incorporating soil and microclimatic factors, and management practices throughout the growing season. The use of multimodal data and machine learning (ML) algorithms could overcome these challenges. Our study aimed to assess the potential of multimodal data (hyperspectral vegetation indices (VIs), thermal indices, and canopy state variables) and ML algorithms to predict grapevine yield components and berry composition parameters. The study was conducted during the 2019/20 and 2020/21 grapevine growing seasons in two South Australian vineyards. Hyperspectral and thermal data of the canopy were collected at several growth stages. Simultaneously, grapevine canopy state variables, including the fractional intercepted photosynthetically active radiation (fiPAR), stem water potential (Ψstem), leaf chlorophyll content (LCC), and leaf gas exchange, were collected. Yield components were recorded at harvest. Berry composition parameters, such as total soluble solids (TSSs), titratable acidity (TA), pH, and the maturation index (IMAD), were measured at harvest. A total of 24 hyperspectral VIs and 3 thermal indices were derived from the proximal hyperspectral and thermal data. These data, together with the canopy state variable data, were then used as inputs for the modelling. Both linear and non-linear regression models, such as ridge (RR), Bayesian ridge (BRR), random forest (RF), gradient boosting (GB), K-Nearest Neighbour (KNN), and decision trees (DTs), were employed to model grape yield components and berry composition parameters. The results indicated that the GB model consistently outperformed the other models. The GB model had the best performance for the total number of clusters per vine (R2 = 0.77; RMSE = 0.56), average cluster weight (R2 = 0.93; RMSE = 0.00), average berry weight (R2 = 0.95; RMSE = 0.00), cluster weight (R2 = 0.95; RMSE = 0.13), and average berries per bunch (R2 = 0.93; RMSE = 0.83). For the yield, the RF model performed the best (R2 = 0.97; RMSE = 0.55). The GB model performed the best for the TSSs (R2 = 0.83; RMSE = 0.34), pH (R2 = 0.93; RMSE = 0.02), and IMAD (R2 = 0.88; RMSE = 0.19). However, the RF model performed best for the TA (R2 = 0.83; RMSE = 0.33). Our results also revealed the top 10 predictor variables for grapevine yield components and quality parameters, namely, the canopy temperature depression, LCC, fiPAR, normalised difference infrared index, Ψstem, stomatal conductance (gs), net photosynthesis (Pn), modified triangular vegetation index, modified red-edge simple ratio, and ANTgitelson index. These predictors significantly influence the grapevine growth, berry quality, and yield. The identification of these predictors of the grapevine yield and fruit composition can assist growers in improving vineyard management decisions and ultimately increase profitability. Full article
(This article belongs to the Section Remote Sensing in Agriculture and Vegetation)
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Graphical abstract
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<p>Coombe Vineyard, Adelaide, South Australia. Abbreviations: CFC (Cabernet Franc C7V15), CS1 (Cabernet Sauvignon 125), SB1 (Shiraz BVRC17), MD1 (Merlot D3V14), SBF (Sauvignon Blanc F4V6), SS3 (Semillon SA32), R17 (Riesling 17), CI1 (Chardonnay I10V1), SR1 (Shiraz Ruggeri 140), SK4 (Shiraz K51-40), ST5 (Shiraz Teleki 5C), SB2 (Shiraz BVRC12), SS4 (Shiraz SO4), SRm (Shiraz Ramsey), SSc (Shiraz Schwarzmann), and S42 (Shiraz 420A). Block A extends from row 1 to 9 and is demarcated by the red outline; block B extends from row 10 to 20 and is demarcated by the green outline; block C extends from row 21 to 30 and is demarcated by the blue outline. Each variety/rootstock is represented by a colour.</p>
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<p>Validation site at Coonawarra. Alex vineyards at the Wynns Coonawarra Estate and Homestead vineyards at the Katnook Coonawarra Estate in South Australia, Australia.</p>
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<p>Weather conditions at the Coombe and Coonawarra vineyards during the 2019/20, 2020/21, and 2021/22 growing seasons. EL 4 budburst (BB), EL 19 flowering (F), EL 27 fruit set (FS), EL 31 pea size (PS), EL 35 veraison (V), EL 37 preharvest (PH), and EL 38 harvest (H).</p>
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<p>Methods workflow. Abbreviations: vegetation indices (VIs), thermal indices (TIs), canopy state variables (CSVs), season 2019/20 and season 2020/21 (2019/20/21), season 2021/22 (2021/22), ridge regression (RR), decision trees (DTs), random forest regression (RF), Bayesian ridge regression (BRR), K-Nearest Neighbour (kNN), and gradient boosting (GB).</p>
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<p>Correlogram of Pearson’s correlation coefficient between grapevine yield components, berry composition parameters, and independent variables; <span class="html-italic">p</span> &lt; 0.05 for all cases.</p>
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<p>Observed versus predicted grapevine yield components and berry composition parameters using the best models identified in the validation. (<b>a</b>) Total number of clusters/vine, (<b>b</b>) Average cluster weight (kg), (<b>c</b>) Weight of 50 berries (kg), (<b>d</b>) Average berry weight (kg), (<b>e</b>) Total cluster yield (kg), (<b>f</b>) Average berries/bunch, (<b>g</b>) Yield (t/ha), (<b>h</b>) Total soluble solids (°Brix), (<b>i</b>) Titratable acidity (g/L), (<b>j</b>) pH (unitless), and (<b>k</b>) Maturity Index IMAD (unitless).</p>
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<p>Predictor importance based on the best models for each of the predicted variables, showing the ranked bar charts for the normalised importance of the different categories of independent variables in the prediction of grapevine yield components and composition parameters. The independent variables were categorised as follows: ‘water’, in blue [‘WI’, ‘NDII’, ‘FWBI1’, ‘FWBI2’, and ‘WBI’]; ‘structure’, in orange [‘NDVI’, ‘GI’, ‘SR’, and ‘MTVI’]; ‘physiology’, in yellow [‘FRI1’, ‘FRI2’, ‘FRI3’, ‘FRI4’, and ‘mRESR’]; ‘pigment’, in green [‘CI’, ‘OSAVI’, ‘RGI’, ‘SIPI’, ‘CARchap’, ‘CARblack’, ‘ANTgamon’, ‘ANTgitelson’, ‘NDRE’, and ‘REIP’], ‘canopy state variables’, in purple [‘Ψ<sub>stem</sub> (negative MPa)’, ‘g<sub>s</sub> (mmol m<sup>−2</sup> s<sup>−1</sup>) ‘, ‘fiPAR’, ‘LCC (SPAD units)’, ‘Photosynthesis (μmol CO<sub>2</sub> m<sup>−2</sup> s<sup>−1</sup>)’, and ‘Transpiration (mmol H<sub>2</sub>O m<sup>−2</sup> s<sup>−1</sup>)’]; ‘thermal’, in firebrick red [‘(T<sub>c</sub> − T<sub>a</sub>) in °C’, ‘CWSI’, ‘I<sub>g</sub>’, and ‘I3’]. Chlorophyll Content (SPAD units) is the same as LCC (SPAD units). Some units were omitted from the figure due to space limitations but were included in the caption.</p>
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18 pages, 13998 KiB  
Article
Assessing Huanglongbing Severity and Canopy Parameters of the Huanglongbing-Affected Citrus in Texas Using Unmanned Aerial System-Based Remote Sensing and Machine Learning
by Ittipon Khuimphukhieo, Jose Carlos Chavez, Chuanyu Yang, Lakshmi Akhijith Pasupuleti, Ismail Olaniyi, Veronica Ancona, Kranthi K. Mandadi, Jinha Jung and Juan Enciso
Sensors 2024, 24(23), 7646; https://doi.org/10.3390/s24237646 - 29 Nov 2024
Viewed by 686
Abstract
Huanglongbing (HLB), also known as citrus greening disease, is a devastating disease of citrus. However, there is no known cure so far. Recently, under Section 24(c) of the Federal Insecticide, Fungicide, and Rodenticide Act (FIFRA), a special local need label was approved that [...] Read more.
Huanglongbing (HLB), also known as citrus greening disease, is a devastating disease of citrus. However, there is no known cure so far. Recently, under Section 24(c) of the Federal Insecticide, Fungicide, and Rodenticide Act (FIFRA), a special local need label was approved that allows the trunk injection of antimicrobials such as oxytetracycline (OTC) for HLB management in Florida. The objectives of this study were to use UAS-based remote sensing to assess the effectiveness of OTC on the HLB-affected citrus trees in Texas and to differentiate the levels of HLB severity and canopy health. We also leveraged UAS-based features, along with machine learning, for HLB severity classification. The results show that UAS-based vegetation indices (VIs) were not sufficiently able to differentiate the effects of OTC treatments of HLB-affected citrus in Texas. Yet, several UAS-based features were able to determine the severity levels of HLB and canopy parameters. Among several UAS-based features, the red-edge chlorophyll index (CI) was outstanding in distinguishing HLB severity levels and canopy color, while canopy cover (CC) was the best indicator in recognizing the different levels of canopy density. For HLB severity classification, a fusion of VIs and textural features (TFs) showed the highest accuracy for all models. Furthermore, random forest and eXtreme gradient boosting were promising algorithms in classifying the levels of HLB severity. Our results highlight the potential of using UAS-based features in assessing the severity of HLB-affected citrus. Full article
(This article belongs to the Special Issue Feature Papers in Smart Agriculture 2024)
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<p>Study area in this study, located at Weslaco, Texas: (<b>a</b>) the map of Texas showing all the counties and Hidalgo County highlighted in red, (<b>b</b>) a sample of the citrus trees studied in red rectangle, and (<b>c</b>) NDVI of the selected sample of citrus trees showing their canopy after the soil background was removed.</p>
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<p>Number of data points of huanglongbing (HLB) severity levels (<b>a</b>), confusion matrix (<b>b</b>), and accuracy matrices (<b>c</b>) used to assess accuracy in this study.</p>
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<p>The flowchart of unmanned aerial system (UAS)-based remote sensing in assessing huanglongbing (HLB) severity and canopy health.</p>
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<p>Computed F-values of unmanned aerial system (UAS)-based features among different categories of huanglongbing severity (<b>a</b>), canopy color (<b>b</b>), and canopy density (<b>c</b>).</p>
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<p>Distribution of vegetation indices among visual rating categories for huanglongbing (HLB) severity (<b>a</b>), canopy color (<b>b</b>), and canopy density (<b>c</b>). The values in the boxes show the mean values of that category (<span class="html-italic">n</span> = 482). The subfigure in the (<b>c</b>) is a dot legend.</p>
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<p>Aerial image captured by an unmanned aerial system (UAS) of a mild huanglongbing (HLB) and severe one (<b>a</b>), and their vegetation indices (<b>b</b>–<b>d</b>) and textural features (<b>e</b>,<b>f</b>). Spatial resolution is 2 cm. The red circles in the (<b>d</b>) are shapefile used to extract canopy cover.</p>
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<p>Boxplots of normalized difference red-edge index (<b>a</b>), red-edge chlorophyll index (<b>b</b>), and canopy cover captured throughout the growing season and their vegetation indices (VIs) maps captured on 3 April 2024. Spatial resolution is 2 cm. The subfigure in the (<b>c</b>) is a dot legend.</p>
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<p>Pearson’s correlation among predictor variables (<span class="html-italic">n</span> = 482).</p>
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<p>Comparison of accuracy matrices among different predictor variables.</p>
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<p>Confusion matrix of naive bayes (<b>a</b>), random forest (<b>b</b>), support vector machine (<b>c</b>), and eXtreme gradient boosting (<b>d</b>) derived from the fusion of textual features and vegetation indices model.</p>
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<p>Comparison between different flight altitudes (30 and 40 m) for vegetation indices including CI (<b>a</b>), NDRE (<b>b</b>), and NDVI (<b>c</b>) and textural features including NIR variance (<b>d</b>), NIR contrast (<b>e</b>), and red correlation (<b>f</b>) (n = 72). ** indicates significant differences at 0.01%.</p>
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17 pages, 5777 KiB  
Article
Monitoring the Degree of Gansu Zokor Damage in Chinese Pine by Hyperspectral Remote Sensing
by Yang Hu, Xiaoluo Aba, Shien Ren, Jing Yang, Xin He, Chenxi Zhang, Yi Lu, Yanqi Jiang, Liting Wang, Yijie Chen, Xiaoqin Mi and Xiaoning Nan
Forests 2024, 15(12), 2074; https://doi.org/10.3390/f15122074 - 24 Nov 2024
Viewed by 639
Abstract
Chinese pine has been extensively planted in the Loess Plateau, but it faces significant threats from Gansu zokor. Traditional methods for monitoring rodent damage rely on manual surveys to assess damage rates but are time-consuming and often underestimate the actual degree of damage, [...] Read more.
Chinese pine has been extensively planted in the Loess Plateau, but it faces significant threats from Gansu zokor. Traditional methods for monitoring rodent damage rely on manual surveys to assess damage rates but are time-consuming and often underestimate the actual degree of damage, particularly in mildly affected pines. This study proposes a remote sensing monitoring method that integrates hyperspectral analysis with physiological and biochemical parameter models to enhance the accuracy of rodent damage detection. Using ASD Field Spec 4, we analyzed spectral data from 125 Chinese pine needles, measuring chlorophyll (CHC), carotenoid (CAC), and water content (WAC). Through correlation analysis, we identified sensitive vegetation indices (VIs) and red-edge parameters (REPs) linked to different levels of damage. We report several key results. The 680 nm spectral band is instrumental in monitoring damage, with significant decreases in CHC, CAC, and WAC corresponding to increased damage severity. We identified six VIs and five REPs, which were later predicted using stepwise regression (SR), support vector machine (SVM), and random forest (RF) models. Among all models, the vegetation index-based RF model exhibited the best predictive performance, achieving coefficient of determination (R2) values of 0.988, 0.949, and 0.999 for CHC, CAC, and WAC, with root mean square errors (RMSEs) of 0.115 mg/g, 0.042 mg/g, and 0.007 mg/g, and mean relative errors (MREs) of 8.413%, 9.169%, and 1.678%. This study demonstrates the potential of hyperspectral remote sensing technology for monitoring rodent infestations in Chinese pines, providing a reliable basis for large-scale assessments and effective management strategies for pest control. Full article
(This article belongs to the Special Issue Risk Assessment and Management of Forest Pest Outbreaks)
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<p>Overview of the study area.</p>
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<p>Spectral reflectance (<b>a</b>) and first derivative spectral reflectance (<b>b</b>) of Chinese pine needles at different damage levels.</p>
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<p>Physiological and biochemical parameter changes (<b>a</b>) and multiple comparisons (<b>b</b>) in Chinese pine under different levels of damage. Distinct letters (a–e) above the bars represent statistically significant differences among groups (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Correlation between physiological and biochemical parameters of Chinese pine and vegetation indices (<b>a</b>) and red-edge parameters (<b>b</b>).</p>
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<p>Chlorophyll content estimation model accuracy comparison. (<b>a</b>) SR model with VIs as input variables; (<b>b</b>) SVM model with VIs as input variables; (<b>c</b>) RF model with VIs as input variables; (<b>d</b>) SR model with REPs as input variables; (<b>e</b>) SVM model with REPs as input variables; (<b>f</b>) RF model with REPs as input variables.</p>
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<p>Carotenoid content estimation model accuracy comparison. (<b>a</b>) SR model with VIs as input variables; (<b>b</b>) SVM model with VIs as input variables; (<b>c</b>) RF model with VIs as input variables; (<b>d</b>) SR model with REPs as input variables; (<b>e</b>) SVM model with REPs as input variables; (<b>f</b>) RF model with REPs as input variables.</p>
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<p>Water content estimation model accuracy comparison. (<b>a</b>) SR model with VIs as input variables; (<b>b</b>) SVM model with VIs as input variables; (<b>c</b>) RF model with VIs as input variables; (<b>d</b>) SR model with REPs as input variables; (<b>e</b>) SVM model with REPs as input variables; (<b>f</b>) RF model with REPs as input variables.</p>
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<p>Images of ground trees, needles, and roots of pine trees at different levels of damage.</p>
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29 pages, 3371 KiB  
Article
Biodiversity from the Sky: Testing the Spectral Variation Hypothesis in the Brazilian Atlantic Forest
by Tobias Baruc Moreira Pinon, Adriano Ribeiro de Mendonça, Gilson Fernandes da Silva, Emanuel Maretto Effgen, Nívea Maria Mafra Rodrigues, Milton Marques Fernandes, Jerônimo Boelsums Barreto Sansevero, Catherine Torres de Almeida, Henrique Machado Dias, Fabio Guimarães Gonçalves and André Quintão de Almeida
Remote Sens. 2024, 16(23), 4363; https://doi.org/10.3390/rs16234363 - 22 Nov 2024
Viewed by 1398
Abstract
Tropical forests have high species richness, being considered the most diverse and complex ecosystems in the world. Research on the variation and maintenance of biodiversity in these ecosystems is important for establishing conservation strategies. The main objective of this study was to test [...] Read more.
Tropical forests have high species richness, being considered the most diverse and complex ecosystems in the world. Research on the variation and maintenance of biodiversity in these ecosystems is important for establishing conservation strategies. The main objective of this study was to test the Spectral Variation Hypothesis through associations between species diversity and richness measured in the field and hyperspectral data collected by a Remotely Piloted Aircraft (RPA) in areas with secondary tropical forest in the Brazilian Atlantic Forest biome. Specific objectives were to determine which dispersion measurements, standard deviation (SD) or coefficient of variation (CV), estimated for the n pixels occurring within each sampling unit, better explains species diversity; the effects of pixel size on the direction and intensity of this relationship; and the effects of shaded pixels within each sampling unit. The spectral variability hypothesis was confirmed for the Atlantic Forest biome, with R2 of 0.83 for species richness and 0.76 and 0.69 for the Shannon and Simpson diversity indices, respectively, using 1.0 m illuminated pixels. The dispersion (CV and SD) of hyperspectral bands were most strongly correlated with taxonomic diversity and richness in the red-edge and near-infrared (NIR) regions of the electromagnetic spectrum. Pixel size affected R2 values, which were higher for 1.0 m pixels (0.83) and lower for 10.0 m pixels (0.71). Additionally, illuminated pixels had higher R2 values than those under shadow effects. The main dispersion variables selected as metrics for regression models were mean CV, CV for the 726.7 nm band, and SD for the 742.3 and 933.4 nm bands. Our results suggest that spectral diversity can serve as a proxy for species diversity in the Atlantic Forest. However, factors that can affect this relationship, such as taxonomic and spectral diversity metrics used, pixel size, and shadow effects in images, should be considered. Full article
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<p>Location and layout of plots in the studied Atlantic Forest areas. Forests at the early successional stage: (<b>A</b>) plots 1 to 7 and (<b>B</b>) 17 to 20 (10–25 years); forests at the intermediate successional stage: (<b>C</b>) plots 8 to 11 (45–70 years); (<b>D</b>) forests at the advanced successional stage: plots 12 to 16 (more than 100 years old).</p>
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<p>Representation of the mask applied to plot 13. (<b>A</b>) RGB image collected by the hyperspectral sensor; (<b>B</b>) image generated from NDVI without mask; (<b>C</b>) image generated from NDVI with the mask applied (NDVI ≤ 0.84).</p>
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<p>Flowchart of the hyperspectral metric selection process (vegetation indices and bands).</p>
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<p>Correlation coefficients between field-estimated Shannon (panels (<b>A</b>–<b>C</b>)), Simpson (panels (<b>D</b>–<b>F</b>)), and richness (panels (<b>G</b>–<b>I</b>)) indices and coefficients of variation (CV) and standard deviations (SDs) of reflectance, considering shaded (no mask) and non-shaded (mask) pixels at three different spatial resolutions (1.0, 5.0, and 10.0 m pixels).</p>
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<p>Relationship between field-measured Shannon (<b>A</b>–<b>F</b>), Simpson (<b>G</b>–<b>L</b>), and species richness (<b>M</b>–<b>R</b>) and the selected hyperspectral metrics, considering illuminated and shaded pixels in the plot at three different spatial resolutions (1.0, 5.0, and 10.0 m pixels).</p>
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<p>Relationship between field-estimated Shannon (<b>A</b>–<b>C</b>), Simpson (<b>D</b>–<b>F</b>), and species richness (<b>G</b>–<b>I</b>) and NDVI SD values, considering shaded and illuminated pixels of the plot at three different spatial resolutions (1.0, 5.0, and 10.0 m pixels), with Shannon and Simpson indices calculated based on coverage.</p>
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13 pages, 3096 KiB  
Article
Defoliation Categorization in Soybean with Machine Learning Algorithms and UAV Multispectral Data
by Marcelo Araújo Junqueira Ferraz, Afrânio Gabriel da Silva Godinho Santiago, Adriano Teodoro Bruzi, Nelson Júnior Dias Vilela and Gabriel Araújo e Silva Ferraz
Agriculture 2024, 14(11), 2088; https://doi.org/10.3390/agriculture14112088 - 19 Nov 2024
Viewed by 561
Abstract
Traditional disease severity monitoring is subjective and inefficient. This study employs a Parrot multispectral sensor mounted on an unmanned aerial vehicle (UAV) to apply machine learning algorithms, such as random forest, for categorizing defoliation levels in R7-stage soybean plants. This research assesses the [...] Read more.
Traditional disease severity monitoring is subjective and inefficient. This study employs a Parrot multispectral sensor mounted on an unmanned aerial vehicle (UAV) to apply machine learning algorithms, such as random forest, for categorizing defoliation levels in R7-stage soybean plants. This research assesses the effectiveness of vegetation indices, spectral bands, and relative vegetation cover as input parameters, demonstrating that machine learning approaches combined with multispectral imagery can provide a more accurate and efficient assessment of Asian soybean rust in commercial soybean fields. The random forest algorithm exhibited satisfactory classification performance when compared to recent studies, achieving accuracy, precision, recall, F1-score, specificity, and AUC values of 0.94, 0.92, 0.92, 0.92, 0.97, and 0.97, respectively. The input variables identified as most important for the classification model were the WDRVI and MPRI indices, the red-edge and NIR bands, and relative vegetation cover, with the highest Gini importance index. Full article
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<p>Location of experimental areas in (<b>a</b>) Lavras, (<b>b</b>) Ijaci, and (<b>c</b>) Nazareno, in Minas Gerais, Brazil.</p>
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<p>Pearson correlation analysis for multiple variables.</p>
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<p>Performance metrics for the random forest classification algorithm.</p>
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<p>Variables of importance by mean Gini decay in vegetation indices, spectral bands, and relative vegetation cover.</p>
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<p>Multidimensional scaling (MDS) of the proximity matrix for the random forest machine learning algorithm.</p>
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<p>Confusion matrix for the random forest machine learning algorithm.</p>
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23 pages, 10605 KiB  
Article
Estimation of Winter Wheat Stem Biomass by a Novel Two-Component and Two-Parameter Stratified Model Using Proximal Remote Sensing and Phenological Variables
by Weinan Chen, Guijun Yang, Yang Meng, Haikuan Feng, Heli Li, Aohua Tang, Jing Zhang, Xingang Xu, Hao Yang, Changchun Li and Zhenhong Li
Remote Sens. 2024, 16(22), 4300; https://doi.org/10.3390/rs16224300 - 18 Nov 2024
Viewed by 534
Abstract
The timely and precise estimation of stem biomass is critical for monitoring the crop growing status. Optical remote sensing is limited by the penetration of sunlight into the canopy depth, and thus directly estimating winter wheat stem biomass via canopy spectra remains a [...] Read more.
The timely and precise estimation of stem biomass is critical for monitoring the crop growing status. Optical remote sensing is limited by the penetration of sunlight into the canopy depth, and thus directly estimating winter wheat stem biomass via canopy spectra remains a difficult task. There is a stable linear relationship between the stem dry biomass (SDB) and leaf dry biomass (LDB) of winter wheat during the entire growth stage. Therefore, this study comprehensively considered remote sensing and crop phenology, as well as biomass allocation laws, to establish a novel two-component (LDB, SDB) and two-parameter (phenological variables, spectral vegetation indices) stratified model (Tc/Tp-SDB) to estimate SDB across the growth stages of winter wheat. The core of the Tc/Tp-SDB model employed phenological variables (e.g., effective accumulative temperature, EAT) to correct the SDB estimations determined from the LDB. In particular, LDB was estimated using spectral vegetation indices (e.g., red-edge chlorophyll index, CIred edge). The results revealed that the coefficient values (β0 and β1) of ordinary least squares regression (OLSR) of SDB with LDB had a strong relationship with phenological variables. These coefficient (β0 and β1) relationships were used to correct the OLSR model parameters based on the calculated phenological variables. The EAT and CIred edge were determined as the optimal parameters for predicting SDB with the novel Tc/Tp-SDB model, with r, RMSE, MAE, and distance between indices of simulation and observation (DISO) values of 0.85, 1.28 t/ha, 0.95 t/ha, and 0.31, respectively. The estimation error of SDB showed an increasing trend from the jointing to flowering stages. Moreover, the proposed model showed good potential for estimating SDB from UAV hyperspectral imagery. This study demonstrates the ability of the Tc/Tp-SDB model to accurately estimate SDB across different growing seasons and growth stages of winter wheat. Full article
(This article belongs to the Section Remote Sensing in Agriculture and Vegetation)
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<p>Geographical location of the study area and winter wheat field experiment. (<b>a</b>) Location of all experiments; (<b>b</b>) the layout of the experimental plots during 2019–2020; (<b>c</b>) experimental designs conducted during 2013–2015 (Exp. 1 and Exp. 2); (<b>d</b>) experimental designs conducted during 2019–2020 and 2021–2022 (Exp. 3 and Exp. 4).</p>
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<p>Daily average temperature during the four growing seasons of the study: (<b>a</b>) Exp. 1 (2013–2014); (<b>b</b>) Exp. 2 (2014–2015); (<b>c</b>) Exp. 3 (2019–2020); (<b>d</b>) Exp. 4 (2021–2022). Note: The sowing days (DAS = 0) of the four experiments were 1 October 2013, 7 October 2014, 27 September 2019, and 30 September 2021.</p>
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<p>Distribution of the measured LDB (<b>a</b>) and SDB (<b>b</b>) for the calibration and validation datasets. The μ and σ represent average and standard deviation, respectively.</p>
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<p>Flowchart of the approach used to develop and validate the Tc/Tp-SDB model.</p>
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<p>Winter wheat data collected in this study at different growth stages during the four-year experiment: (<b>a</b>) SDB, (<b>b</b>) LDB.</p>
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<p>Relationship between VIs and dry biomass variables at different stages of the 2019–2020 growing season. (<b>a</b>) SDB vs. CI<sub>red edge</sub>, (<b>b</b>) LDB vs. CI<sub>red edge</sub>, (<b>c</b>) SDB vs. ND<sub>LMA</sub>, (<b>d</b>) LDB vs. ND<sub>LMA</sub>.</p>
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<p>Relationship between LDB and SDB at different stages during four growing seasons: (<b>a</b>) 2013–2014, (<b>b</b>) 2014–2015, (<b>c</b>) 2019–2020, (<b>d</b>) 2021–2022.</p>
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<p>Average and standard deviation of the correlation coefficient r (<b>a</b>), RMSE (<b>b</b>), MAE (<b>c</b>), and DISO (<b>d</b>) using the test datasets from the 5-fold cross-validation.</p>
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<p>Relationship (<b>a</b>,<b>b</b>) between measured and estimated LDB using the CIred edge-LDB method, and the residual distributions between different LDB levels (<b>c</b>,<b>d</b>).</p>
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<p>Relationship between the measured and estimated SDB of winter wheat using the calibration datasets. (<b>a</b>) GDD; (<b>b</b>) EAT; (<b>c</b>) DOY; (<b>d</b>) DAS.</p>
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<p>Relationship between the measured and estimated SDB of winter wheat using the calibration datasets. (<b>a</b>) GDD; (<b>b</b>) EAT; (<b>c</b>) DOY; (<b>d</b>) DAS.</p>
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<p>Relationship (<b>a</b>,<b>b</b>) between the measured and estimated SDB of winter wheat using the validation datasets, and the residual distribution for the Tc/Tp-SDB-EAT and Tc/Tp-SDB-DOY models under different SDB levels (<b>c</b>,<b>d</b>).</p>
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<p>Relationship (<b>a</b>,<b>b</b>) between the measured and estimated SDB of winter wheat using the validation datasets, and the residual distribution for the Tc/Tp-SDB-EAT and Tc/Tp-SDB-DOY models under different SDB levels (<b>c</b>,<b>d</b>).</p>
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<p>SDB maps determined from the Tc/Tp-SDB model with UAV hyperspectral images. (<b>a</b>) SDB during the flagging stage (26<sup>th</sup> April); (<b>b</b>) SDB during the flowering stage (13<sup>th</sup> May).</p>
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<p>The distribution of the residuals of LDB and SDB in different growth stages (<b>a</b>), and the change of SLR with growth stage (<b>b</b>). Note: both (<b>a</b>,<b>b</b>) use all datasets.</p>
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<p>Relationship between the measured and estimated SDB of winter wheat using the validation datasets with models using only (<b>a</b>) CI<sub>red edge</sub>, (<b>b</b>) EAT.</p>
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17 pages, 7833 KiB  
Article
Analysis of Growth Variation in Maize Leaf Area Index Based on Time-Series Multispectral Images and Random Forest Models
by Xuyang Wang, Jiaojiao Ren and Penghao Wu
Agronomy 2024, 14(11), 2688; https://doi.org/10.3390/agronomy14112688 - 14 Nov 2024
Viewed by 496
Abstract
The leaf area index (LAI) is a direct indicator of crop canopy growth and serves as an indirect measure of crop yield. Unmanned aerial vehicles (UAVs) offer rapid collection of crop phenotypic data across multiple time points, providing crucial insights into the evolving [...] Read more.
The leaf area index (LAI) is a direct indicator of crop canopy growth and serves as an indirect measure of crop yield. Unmanned aerial vehicles (UAVs) offer rapid collection of crop phenotypic data across multiple time points, providing crucial insights into the evolving dynamics of the LAI essential for crop breeding. In this study, the variation process of the maize LAI was investigated across two locations (XD and KZ) using a multispectral sensor mounted on a UAV. During a field trial involving 399 maize inbred lines, LAI measurements were obtained at both locations using a random forest model based on 28 variables extracted from multispectral imagery. These findings indicate that the vegetation index computed by the near-infrared band and red edge significantly influences the accuracy of the LAI prediction. However, a prediction model relying solely on data from a single observation period exhibits instability (R2 = 0.34–0.94, RMSE = 0.02–0.25). When applied to the entire growth period, the models trained using all data achieved a robust prediction of the LAI (R2 = 0.79–0.86, RMSE = 0.12–0.18). Although the primary variation patterns of the maize LAI were similar across the two fields, environmental disparities changed the variation categories of the maize LAI. The primary factor contributing to the difference in the LAI between KZ and XD lies in soil nutrients associated with carbon and nitrogen in the upper soil. Overall, this study demonstrated that UAV-based time-series phenotypic data offers valuable insight into phenotypic variation, thereby enhancing the application of UAVs in crop breeding. Full article
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<p>Location and design of study area. (<b>a</b>) Location of the study area; (<b>b</b>) DJI Matrice 300 RTK quadcopter; (<b>c</b>) MicaSense RedEdge-P multispectral sensor; (<b>d</b>) RGB map and design of KZ shows the 100 selected plots (red squares) for situ measurements, nine ground control points (green squares), and two replications (red and blue borders); (<b>e</b>) RGB map and design of XD, display content is the same as (<b>c</b>); (<b>f</b>) removed soil background from maize plot.</p>
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<p>A framework regarding leaf area index (LAI) estimation in this study.</p>
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<p>LAI data collected manually in situ during 8 periods. (<b>a</b>) KZ field; (<b>b</b>) XD field.</p>
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<p>In (<b>a</b>) KZ and (<b>b</b>) XD field, top 25% most important variables in the random forest models and (<b>c</b>) variables obtained through variable selection on the KZ and XD.</p>
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<p>The UAV on (<b>a</b>) KZ field and (<b>b</b>) XD field. Comparison between manually measured LAI with LAI predicted by RF models.</p>
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<p>Maps of LAI using the random forest prediction model trained on all stages. (<b>a</b>) KZ; (<b>b</b>) XD.</p>
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<p>Violin plots of maize LAI using the RF model on (<b>a</b>) KZ field and (<b>b</b>) XD field. The horizontal axis represents different observation periods. (<b>c</b>) Comparison of maize LAI between KZ field and XD field in different observation periods. The central short line represents the median value. *, ** and *** are significant correlation at <span class="html-italic">p</span> &lt; 0.05, <span class="html-italic">p</span> &lt; 0.01, <span class="html-italic">p</span> &lt; 0.001, respectively. NS: not significantly different.</p>
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<p>Principal component analysis (PCA) and cluster analysis of maize LAI change on KZ field (<b>a</b>,<b>c</b>) and XD field (<b>b</b>,<b>d</b>). Q, quantile. Different colors indicate clusters.</p>
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<p>Effects of different fertilization treatments on LAI of maize. (<b>a</b>) Nutrient conditions of different soil layers in KZ field and XD field. (<b>b</b>) Effects of soil nutrient conditions in different soil layers on maize LAI. Higher values of mean decrease in accuracy indicate variables that are more important to the LAI. * is significant correlation at <span class="html-italic">p</span> &lt; 0.05.</p>
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14 pages, 6740 KiB  
Article
Detection of Rice Leaf Folder in Paddy Fields Based on Unmanned Aerial Vehicle-Based Hyperspectral Images
by Shanshan Feng, Shun Jiang, Xuying Huang, Lei Zhang, Yangying Gan, Laigang Wang and Canfang Zhou
Agronomy 2024, 14(11), 2660; https://doi.org/10.3390/agronomy14112660 - 12 Nov 2024
Viewed by 658
Abstract
Pest infestations significantly impact rice production and threaten food security. Remote sensing offers a vital tool for the non-destructive, rapid detection of rice pests. Existing studies often focus on laboratory conditions at the leaf level, limiting their applicability for precise pesticide application. Therefore, [...] Read more.
Pest infestations significantly impact rice production and threaten food security. Remote sensing offers a vital tool for the non-destructive, rapid detection of rice pests. Existing studies often focus on laboratory conditions at the leaf level, limiting their applicability for precise pesticide application. Therefore, this study aimed to develop a method for detecting rice pests (rice leaf folders) in paddy fields based on unmanned aerial vehicle (UAV) hyperspectral data. Firstly, a UAV imaging system collected hyperspectral images of rice plants in both the jointing and heading stages. A total of 222 field plots for investigating rice leaf folders was established during these two periods. Secondly, 23 vegetation indices were calculated as candidates for identifying rice pests. Then, hyperspectral data and field investigation data from the jointing stage were used to construct a machine learning (extreme gradient boosting, XGBoost) algorithm for detecting rice pests. The results showed that the XGBoost model exhibited the best performance when eight vegetation indices were considered as the selected input features for model construction: the Red-edge Normalized Difference Vegetation Index (red-edge NDVI), Structure Insensitive Pigment Index (SIPI), Enhanced Vegetation Index (EVI), Atmospherically Resistant Vegetation Index (ARVI), Soil-Adjusted Vegetation Index (SAVI), Red-edge Chlorophyll Index (CIred-edge), Pigment-Specific Simple Ratio680 (PSSR680), and Carotenoid Reflectance Index700 (CPI700). The training and testing accuracies reached 87.46% and 86%, respectively. Furthermore, the heading stage application confirmed the model’s feasibility. Thus, the XGBoost model with input features of eight vegetation indices provides an effective and reliable method for detecting rice leaf folders, supporting real-time, precise pesticide use in rice cultivation. Full article
(This article belongs to the Section Pest and Disease Management)
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<p>Experimental site of the paddy field.</p>
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<p>Technical flow of this study.</p>
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<p>Spectral reflectance of healthy rice and infested rice: (<b>A</b>) 28<sup>th</sup> Sept.; (<b>B</b>) 25<sup>th</sup> Oct.</p>
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<p>The contribution ranking of different features.</p>
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<p>The accuracy for 10-fold cross-validation in the model training process.</p>
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<p>Spatial distribution of rice pest infestations: (<b>A</b>) 28<sup>th</sup> Sept.; (<b>B</b>) 25<sup>th</sup> Oct.</p>
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15 pages, 3402 KiB  
Article
Multispectral UAV-Based Disease Identification Using Vegetation Indices for Maize Hybrids
by László Radócz, Csaba Juhász, András Tamás, Árpád Illés, Péter Ragán and László Radócz
Agriculture 2024, 14(11), 2002; https://doi.org/10.3390/agriculture14112002 - 7 Nov 2024
Viewed by 795
Abstract
In the future, the cultivation of maize will become more and more prominent. As the world’s demand for food and animal feeding increases, remote sensing technologies (RS technologies), especially unmanned aerial vehicles (UAVs), are developing more and more, and the usability of the [...] Read more.
In the future, the cultivation of maize will become more and more prominent. As the world’s demand for food and animal feeding increases, remote sensing technologies (RS technologies), especially unmanned aerial vehicles (UAVs), are developing more and more, and the usability of the cameras (Multispectral-MS) installed on them is increasing, especially for plant disease detection and severity observations. In the present research, two different maize hybrids, P9025 and sweet corn Dessert R78 (CS hybrid), were employed. Four different treatments were performed with three different doses (low, medium, and high dosage) of infection with corn smut fungus (Ustilago maydis [DC] Corda). The fields were monitored two times after the inoculation—20 DAI (days after inoculation) and 27 DAI. The orthomosaics were created in WebODM 2.5.2 software and the study included five vegetation indices (NDVI [Normalized Difference Vegetation Index], GNDVI [Green Normalized Difference Vegetation Index], NDRE [Normalized Difference Red Edge], LCI [Leaf Chlorophyll Index] and ENDVI [Enhanced Normalized Difference Vegetation Index]) with further analysis in QGIS. The gathered data were analyzed using R-based Jamovi 2.6.13 software with different statistical methods. In the case of the sweet maize hybrid, we obtained promising results, as follows: the NDVI values of CS 0 were significantly higher than the high-dosed infection CS 10.000 with a mean difference of 0.05422 *** and a p value of 4.43 × 10−5 value, suggesting differences in all of the levels of infection. Furthermore, we investigated the correlations of the vegetation indices (VI) for the Dessert R78, where NDVI and GNDVI showed high correlations. NDVI had a strong correlation with GNDVI (r = 0.83), a medium correlation with LCI (r = 0.56) and a weak correlation with NDRE (r = 0.419). There was also a strong correlation between LCI and GNDVI, with r = 0.836. NDRE and GNDVI indices had the correlation coefficients with a CCoeff. of r = 0.716. For hybrid separation analyses, useful results were obtained for NDVI and ENDVI as well. Full article
(This article belongs to the Section Crop Production)
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<p>Map of Hungary and Subregion Hajdú-Bihar county with subregion and city of Debrecen where the experiment was set up.</p>
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<p>Research field of the University of Debrecen. Each red rectangle represents a parcel, including its numbers. (DJI Phantom 4 MS multispectral made in China by Shenzhen DJI Sciences and Technologies Ltd., Shenzhen, China (the recording contains all six channels) orthomosaic in the environment of QGIS 3.360).</p>
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<p>Research field NDVI map (QGIS environment). The filtered version contains only maize plants pixel on the colored NDVI channel.</p>
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<p>Symptoms of the <span class="html-italic">Ustilago maydis</span> (DC) Corda three weeks after the infection (left picture, stalk symptom; right picture, leaf symptoms); hlorosis and cell destruction mainly seen on the plant tissues.</p>
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<p>Data distribution in histogram with density for the five VIs. NDVI, GNDVI, ENDVI, NDRE and LCI in sweet maize Dessert R78 hybrid. H + IL stands for hybrid and infection level.</p>
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<p>Correlation matrix of the five different VIs. Note: * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, one-tailed.</p>
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<p>Data distribution in histogram with density for the five VIs. NDVI, GNDVI, ENDVI, NDRE, and LCI in forage maize P9025 hybrid. H + IL stands for hybrid and infection level.</p>
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<p>Box plot and data distribution VI. NDVI for P9025 (T) and Dessert R78 (CS).</p>
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<p>Box plot and data distribution VI. ENDVI for P9025 (T) and Dessert R78 (CS).</p>
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20 pages, 18208 KiB  
Article
Mapping Invasive Species Pedicularis and Background Grassland Using UAV and Machine Learning Algorithms
by Jin Zhao, Kaihui Li, Jiarong Zhang, Yanyan Liu and Xuan Li
Drones 2024, 8(11), 639; https://doi.org/10.3390/drones8110639 - 4 Nov 2024
Viewed by 888
Abstract
The rapid spread of invasive plants presents significant challenges for the management of grasslands. Uncrewed aerial vehicles (UAVs) offer a promising solution for fast and efficient monitoring, although the optimal methodologies require further refinement. The objective of this research was to establish a [...] Read more.
The rapid spread of invasive plants presents significant challenges for the management of grasslands. Uncrewed aerial vehicles (UAVs) offer a promising solution for fast and efficient monitoring, although the optimal methodologies require further refinement. The objective of this research was to establish a rapid, repeatable, and cost-effective computer-assisted method for extracting Pedicularis kansuensis (P. kansuensis), an invasive plant species. To achieve this goal, an investigation was conducted into how different backgrounds (swamp meadow, alpine steppe, land cover) impact the detection of plant invaders in the Bayanbuluk grassland in Xinjiang using Random Forest (RF), Support Vector Machine (SVM) and eXtreme Gradient Boosting (XGBoost) with three feature combinations: spectral band, vegetation index (VI), and spectral band + VI. The results indicate that all three feature combinations achieved an overall accuracy ranging from 0.77 to 0.95. Among the three models, XGBoost demonstrates the highest accuracy, followed by Random Forest (RF), while Support Vector Machine (SVM) exhibits the lowest accuracy. The most significant feature bands for the three field plots, as well as the invasive species and land cover, were concentrated at 750 nm, 550 nm, and 660 nm. It was found that the green band proved to be the most influential for improving invasive plant extraction while the red edge 750 nm band ranked highest for overall classification accuracy among these feature combinations. The results demonstrate that P. kansuensis is highly distinguishable from co-occurring native grass species, with accuracies ranging from 0.9 to 1, except for SVM with six spectral bands, indicating high spectral variability between its flowers and those of co-occurring native background species. Full article
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<p>Location of UAV sites.</p>
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<p>Flowchart of classification of invasive species and grassland.</p>
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<p>Orthoimage and field photo of the quadrat.</p>
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<p>Classification map based on the spectral bands of UAV orthoimages.</p>
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<p>Accuracy assessment for UAV orthoimages. The color ranges from 0 to 1, with red indicating lower accuracy and white indicating higher accuracy.</p>
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<p>Accuracy assessment for UAV orthoimages. The color ranges from 0 to 1, with red indicating lower accuracy and white indicating higher accuracy.</p>
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<p>Feature importance of spectral bands and indices.</p>
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<p>Scatter plots of two bands in swamp meadow.</p>
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<p>Scatter plots of two bands in alpine steppe1.</p>
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<p>Scatter plots of two bands in alpine steppe2.</p>
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22 pages, 4356 KiB  
Article
Using Unmanned Aerial Systems Technology to Characterize the Dynamics of Small-Scale Maize Production Systems for Precision Agriculture
by Andrew Manu, Joshua McDanel, Daniel Brummel, Vincent Kodjo Avornyo and Thomas Lawler
Drones 2024, 8(11), 633; https://doi.org/10.3390/drones8110633 - 1 Nov 2024
Viewed by 1016
Abstract
Precision agriculture (PA) utilizes spatial and temporal variability to improve the sustainability and efficiency of farming practices. This study used high-resolution imagery from UAS to evaluate maize yield variability across three fields in Ghana: Sombolouna, Tilli, and Yendi, exploiting the potential of UAS [...] Read more.
Precision agriculture (PA) utilizes spatial and temporal variability to improve the sustainability and efficiency of farming practices. This study used high-resolution imagery from UAS to evaluate maize yield variability across three fields in Ghana: Sombolouna, Tilli, and Yendi, exploiting the potential of UAS technology in PA. Initially, excess green index (EGI) classification was used to differentiate between bare soil, dead vegetation, and thriving vegetation, including maize and weeds. Thriving vegetation was further classified into maize and weeds, and their corresponding rasters were developed. Normal difference red edge (NDRE) was applied to assess maize health. The Jenks natural breaks algorithm classified maize rasters into low, medium, and high differential yield zones (DYZs). The percentage of bare spaces, maize, weed coverages, and total maize production was determined. Significant variations in field conditions showed Yendi had 34% of its field as bare, Tilli had the highest weed coverage at 22%, and Sombolouna had the highest maize crop coverage at 73.9%. Maize yields ranged from 860 kg ha−1 in the low DYZ to 4900 kg ha−1 in the high DYZ. Although yields in Sombolouna and Tilli were similar, both fields significantly outperformed Yendi. Scenario analysis suggested that enhancing management practices to elevate low DYZs to medium levels could increase production by 2.1%, while further improvements to raise low and medium DYZs to high levels could boost productivity by up to 20%. Full article
(This article belongs to the Special Issue UAS in Smart Agriculture: 2nd Edition)
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<p>Location of maize production sites (red pins) that served as project sites: Sombolouna and Tilli in the Upper East Region of Ghana and Yendi in the Northern Region.</p>
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<p>Illustration of how DYZs were generalized. Blue ovals are input layers not produced in the generalization process, yellow rectangles are the tools used in ArcGIS Pro, and green ovals are layers produced by the tools used. Arrows display the workflow used to create the final generalized zones.</p>
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<p>High-resolution RGB orthomosaics of maize production fields at (<b>a</b>) Sombolouna, (<b>b</b>) Tilli, and (<b>c</b>) Yendi, captured using unmanned aerial systems technology at the R2 stage of the maize crop: (Coordinate System: WGS 1984 WGS 1984 UTM Zone N; Projection: Transverse Mercator: Datum: WGS1984).</p>
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<p>Detailed (high resolution) NDRE differential yield zone maps: (<b>a</b>) Sombolouna, (<b>b</b>) Tilli, and (<b>c</b>) Yendi, showing low-, medium-, and high-yielding areas at the R2 stage of the maize crop.</p>
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<p>Generalized maps of fields at (<b>a</b>) Sombolouna, (<b>b</b>) Tilli, and (<b>c</b>) Yendi, showing low, medium, and high differential yield zones at the R2 stage of the maize crop.</p>
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<p>Percent land coverage of high, medium, and zones at Sombolouna, Tilli, and Yendi. According to Tukey’s studentized range test, bars of the same texture and color with the same letter are not significantly different at the 0.05 level.</p>
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<p>Percentage of bare areas in (<b>a</b>) production fields and (<b>b</b>) differential yield zones within fields. Using Turkey’s studentized range test, bars with the same letters are not significantly different at the 0.05 level.</p>
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<p>Maize and weed coverages at Sombolouna, Tilli, and Yendi. Using Turkey’s studentized range test, bars with the same letters are not significantly different at the 0.05 level.</p>
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<p>Vegetation distribution and its partition into maize and weeds as a function of zones. Using Turkey’s studentized range test, bars with the same letters are not significantly different at the 0.05 level.</p>
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<p>Plant density (plants/ha) production in fields (<b>a</b>) and (<b>b</b>) in differential yield zones within fields. Using Turkey’s studentized range test, bars with the same letters are not significantly different at the 0.05 level.</p>
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<p>Maize grain production in (<b>a</b>) differential yield zones and (<b>b</b>) in production fields. Using Turkey’s studentized range test, bars with the same letters are not significantly different at the 0.05 level.</p>
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14 pages, 8742 KiB  
Article
Estimating Winter Canola Aboveground Biomass from Hyperspectral Images Using Narrowband Spectra-Texture Features and Machine Learning
by Xia Liu, Ruiqi Du, Youzhen Xiang, Junying Chen, Fucang Zhang, Hongzhao Shi, Zijun Tang and Xin Wang
Plants 2024, 13(21), 2978; https://doi.org/10.3390/plants13212978 - 25 Oct 2024
Viewed by 798
Abstract
Aboveground biomass (AGB) is a critical indicator for monitoring the crop growth status and predicting yields. UAV remote sensing technology offers an efficient and non-destructive method for collecting crop information in small-scale agricultural fields. High-resolution hyperspectral images provide abundant spectral-textural information, but whether [...] Read more.
Aboveground biomass (AGB) is a critical indicator for monitoring the crop growth status and predicting yields. UAV remote sensing technology offers an efficient and non-destructive method for collecting crop information in small-scale agricultural fields. High-resolution hyperspectral images provide abundant spectral-textural information, but whether they can enhance the accuracy of crop biomass estimations remains subject to further investigation. This study evaluates the predictability of winter canola AGB by integrating the narrowband spectra and texture features from UAV hyperspectral images. Specifically, narrowband spectra and vegetation indices were extracted from the hyperspectral images. The Gray Level Co-occurrence Matrix (GLCM) method was employed to compute texture indices. Correlation analysis and autocorrelation analysis were utilized to determine the final spectral feature scheme, texture feature scheme, and spectral-texture feature scheme. Subsequently, machine learning algorithms were applied to develop estimation models for winter canola biomass. The results indicate: (1) For spectra features, narrow-bands at 450~510 nm, 680~738 nm, 910~940 nm wavelength, as well as vegetation indices containing red-edge narrow-bands, showed outstanding performance with correlation coefficients ranging from 0.49 to 0.65; For texture features, narrow-band texture parameters CON, DIS, ENT, ASM, and vegetation index texture parameter COR demonstrated significant performance, with correlation coefficients between 0.65 and 0.72; (2) The Adaboost model using the spectra-texture feature scheme exhibited the best performance in estimating winter canola biomass (R2 = 0.91; RMSE = 1710.79 kg/ha; NRMSE = 19.88%); (3) The combined use of narrowband spectra and texture feature significantly improved the estimation accuracy of winter canola biomass. Compared to the spectra feature scheme, the model’s R2 increased by 11.2%, RMSE decreased by 29%, and NRMSE reduced by 17%. These findings provide a reference for studies on UAV hyperspectral remote sensing monitoring of crop growth status. Full article
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<p>Correlation analysis between spectral-texture information and winter canola AGB. (<b>a</b>) Correlation analysis between 138 bands spectral reflectance/texture indicators and winter canola AGB; (<b>b</b>) Correlation analysis between 21 narrowband spectral indices/texture indicators and winter canola AGB.</p>
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<p>Autocorrelation analysis of (<b>a</b>) spectral and (<b>b</b>) texture features.</p>
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<p>Evaluation of the accuracy of winter canola AGB estimation. (<b>a</b>–<b>c</b>), (<b>d</b>–<b>f</b>), (<b>g</b>–<b>i</b>) represent the evaluation of spectra, texture, and spectra-texture information in winter canola AGB estimation; (<b>a</b>)/(<b>d</b>)/(<b>g</b>), (<b>b</b>)/(<b>e</b>)/(<b>h</b>), (<b>c</b>)/(<b>f</b>)/(<b>i</b>) represent the estimation accuracy evaluation indicators R<sup>2</sup>, RMSE, and NRMSE, respectively. Six colors are used to represent modeling algorithm types.</p>
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<p>Scatter plot of estimated and measured winter canola AGB values.</p>
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<p>Comparison of the correlation between (<b>a</b>) spectra/(<b>b</b>) texture and winter canola AGB.</p>
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<p>Comparison of the correlation between narrowband, broadband, and biomass.</p>
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<p>Effect of the pixel size on winter canola AGB estimation. + represents the average value of the correlation coefficient. The red connecting line is used to enhance the display of the variation of the correlation coefficient at different resolutions.</p>
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<p>Technology roadmap.</p>
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