Search Results (33)

Arthropod biodiversity research usually requires large sample collections. The efficient handling of these samples has always been a critical bottleneck. Sweep netting along transects is an effective and commonly used approach to sample diverse insects. However, sweep netting requires the time-consuming task of sorting insects from the large amounts of debris and foliage that end up in the sweep net along with the insects. To address this, we introduce a robust, portable, and inexpensive photocollector device with an LED light source to extract insects from sweep net samples in a standardized way. Timed field trials tested the photocollector’s efficiency in extracting live insect samples from debris, focusing on Hymenoptera and Diptera. We found that 73% (±13%) of undamaged specimens moved toward the collection bottle within the first hour and 79% (±13%) after four hours. Of the insects failing to move after four hours, most (81%) were damaged and likely unable to move. Accounting only for undamaged specimens, 83% (±11%) moved after 1 h and 90% (±11%) moved after 4 h. We found significant differences in when families of Hymenoptera and Diptera moved. We suggest that the photocollector can be a useful tool in standardized biodiversity assessments. Full article

This study addresses the challenge of bearing-only target localization with sensor bias contamination. To enhance the system’s observability, inspired by plant phototropism, we propose a control barrier function (CBF)-based method for UAV motion planning. The rank criterion provides only qualitative observability results. We employ the condition number for a quantitative analysis, identifying key influencing factors. After that, a multi-objective, nonlinear optimization problem for UAV trajectory planning is formulated and solved using the proposed Nonlinear Constrained Multi-Objective Gray Wolf Optimization Algorithm (NCMOGWOA). Simulations validate our approach, showing a threefold reduction in the condition number, significantly enhancing observability. The algorithm outperforms others in terms of localization accuracy and convergence, achieving the lowest Generational Distance (GD) (7.3442) and Inverted Generational Distance (IGD) (8.4577) metrics. Additionally, we explore the effects of the CBF attenuation rates and initial flight path angles. Full article

In this study, the morphology and ultrastructure of the compound eye of Asi. xanthospilota were examined by using scanning electron microscopy (SEM), transmission electron microscopy (TEM), micro-computed tomography (μCT), and 3D reconstruction. Spectral sensitivity was investigated by electroretinogram (ERG) tests and phototropism experiments. The compound eye of Asi. xanthospilota is of the apposition type, consisting of 611.00 ± 17.53 ommatidia in males and 634.8 0 ± 24.73 ommatidia in females. Each ommatidium is composed of a subplano-convex cornea, an acone consisting of four cone cells, eight retinular cells along with the rhabdom, two primary pigment cells, and about 23 secondary pigment cells. The open type of rhabdom in Asi. xanthospilota consists of six peripheral rhabdomeres contributed by the six peripheral retinular cells (R1~R6) and two distally attached rhabdomeric segments generated solely by R7, while R8 do not contribute to the rhabdom. The orientation of microvilli indicates that Asi. xanthospilota is unlikely to be a polarization-sensitive species. ERG testing showed that both males and females reacted to stimuli from red, yellow, green, blue, and ultraviolet light. Both males and females exhibited strong responses to blue and green light but weak responses to red light. The phototropism experiments showed that both males and females exhibited positive phototaxis to all five lights, with blue light significantly stronger than the others. Full article

A Type I reaction center (RC) (Fe-S type, ferredoxin reducing) is found in several phyla containing anoxygenic phototrophic bacteria. These include the heliobacteria (HB), the green sulfur bacteria (GSB), and the chloracidobacteria (CB), for which high-resolution homodimeric RC-photosystem (PS) structures have recently appeared. The 2.2-Å X-ray structure of the RC-PS of Heliomicrobium modesticaldum revealed that the core PshA apoprotein (PshA-1 and PshA-2 homodimeric pair) exhibits a structurally conserved PSI arrangement comprising five C-terminal transmembrane α-helices (TMHs) forming the RC domain and six N-terminal TMHs coordinating the light-harvesting (LH) pigments. The Hmi. modesticaldum structure lacked quinone molecules, indicating that electrons were transferred directly from the A₀ (8¹-OH-chlorophyll (Chl) a) acceptor to the F_X [4Fe-4S] component, serving as the terminal RC acceptor. A pair of additional TMHs designated as Psh X were also found that function as a low-energy antenna. The 2.5-Å resolution cryo-electron microscopy (cryo-EM) structure for the RC-PS of the green sulfur bacterium Chlorobaculum tepidum included a pair of Fenna–Matthews–Olson protein (FMO) antennae, which transfer excitations from the chlorosomes to the RC-PS (PscA-1 and PscA-2) core. A pair of cytochromes c_Z (PscC) molecules was also revealed, acting as electron donors to the RC bacteriochlorophyll (BChl) a’ special pair, as well as PscB, housing the [4Fe-4S] cluster F_A and F_B, and the associated PscD protein. While the FMO components were missing from the 2.6-Å cryo-EM structure of the Zn- (BChl) a’ special pair containing RC-PS of Chloracidobacterium thermophilum, a unique architecture was revealed that besides the (PscA)₂ core, consisted of seven additional subunits including PscZ in place of PscD, the PscX and PscY cytochrome c serial electron donors and four low mol. wt. subunits of unknown function. Overall, these diverse structures have revealed that (i) the HB RC-PS is the simplest light–energy transducing complex yet isolated and represents the closest known homolog to a common homodimeric RC-PS ancestor; (ii) the symmetrically localized Ca²⁺-binding sites found in each of the Type I homodimeric RC-PS structures likely gave rise to the analogously positioned Mn₄CaO₅ cluster of the PSII RC and the Tyr_Z RC donor site; (iii) a close relationship between the GSB RC-PS and the PSII Chl proteins (CP)43 and CP47 was demonstrated by their strongly conserved LH-(B)Chl localizations; (iv) LH-BChls of the GSB-RC-PS are also localized in the conserved RC-associated positions of the PSII Chl_Z-D1 and Chl_Z-D2 sites; (v) glycosylated carotenoids of the GSB RC-PS are located in the homologous carotenoid-containing positions of PSII, reflecting an O₂-tolerance mechanism capable of sustaining early stages in the evolution of oxygenic photosynthesis. In addition to the close relationships found between the homodimeric RC-PS and PSII, duplication of the gene encoding the ancestral Type I RC apoprotein, followed by genetic divergence, may well account for the appearance of the heterodimeric Type I and Type II RCs of the extant oxygenic phototrophs. Accordingly, the long-held view that PSII arose from the anoxygenic Type II RC is now found to be contrary to the new evidence provided by Type I RC-PS homodimer structures, indicating that the evolutionary origins of anoxygenic Type II RCs, along with their distinct antenna rings are likely to have been preceded by the events that gave rise to their oxygenic counterparts. Full article

Gravitropism is the plant organ bending in response to gravity. Gravitropism, phototropism and sufficient mechanical strength define the optimal position of young shoots for photosynthesis. Etiolated wild-type Arabidopsis seedlings grown horizontally in the presence of sucrose had a lot more upright hypocotyls than seedlings grown without sucrose. We studied the mechanism of this effect at the level of cell wall biomechanics and biochemistry. Sucrose strengthened the bases of hypocotyls and decreased the content of mannans in their cell walls. As sucrose is known to increase the gravitropic bending of hypocotyls, and mannans have recently been shown to interfere with this process, we examined if the effect of sucrose on shoot gravitropism could be partially mediated by mannans. We compared cell wall biomechanics and metabolomics of hypocotyls at the early steps of gravitropic bending in Col-0 plants grown with sucrose and mannan-deficient mutant seedlings. Sucrose and mannans affected gravitropic bending via different mechanisms. Sucrose exerted its effect through cell wall-loosening proteins, while mannans changed the walls’ viscoelasticity. Our data highlight the complexity of shoot gravitropism control at the cell wall level. Full article

The behavioral responses of autochthonous organisms have recently been used for a system to monitor the state of fresh and sea waters for bioindication. The advantage of using the behavioral responses of mesozooplankton is determined by the higher sensitivity of such responses compared with changes in the composition of biota or the death of organisms. Earlier, we developed and tested in laboratory conditions and in freshwater reservoirs a submersible digital holographic camera as part of a hydrobiological probe, which allows one to determine the dimensions, shape and recognition of plankters in situ, as well as define the concentration of plankters in the working volume and perform photostimulation with attractive radiation with different levels of illuminance. This paper presents the data obtained during the expedition to the Barents Sea. The variability with regard to the immersion depth of the phototropic response and the interspecific and intraspecific diversity was determined. It was shown that within the framework of natural variability in natural factors (temperature, salinity, hydrostatic pressure, oxygen content, illumination) there are no reliable changes in the indicator response, unlike changes in the concentration of plankton associated with tidal currents. The anthropogenic distortion of water quality was modeled by introducing a saturated salt solution dropwise. There were no significant changes in the intraspecific and interspecific diversity index during the external impact, and the rhythms of tidal changes in the concentration of plankters were suppressed. The fact of increased phototropic sensitivity in crustaceans with a size of less than 120 μm was found. It was established that the most essential marker of the alternating factor was the suppression of the phototropic response. The identified patterns of behavioral responses of autochthonous zooplankton make it possible to create a network of continuous control over the environmental health of water bodies subject to increased anthropogenic impact (oil production zones beyond the Arctic Circle, estuaries and deltas of rivers carrying industrial waste). Full article

Earlier, we showed that the registration of the behavioral responses of autochthonous mesozooplankton communities in situ is a more dynamic methodological approach in the biological assessment of the environmental well-being of aquatic ecosystems, as well as an alternative method to generally accepted tests on mortality and immobilization. The change in behavioral responses, including phototropic responses, may occur at lower concentrations of pollutants, leading to the inhibition of the risk-avoidance response of predatory fish attack and, ultimately, to the change in zooplankton abundance and biodiversity. The biological significance of such changes is quite high since zooplankters form the basis of food chains. This work studies the possibility of biomonitoring the quality of fresh water in Lake Baikal according to the state of the autochthonous mesozooplankton community in summer and winter using a digital holographic camera developed and tested by us in laboratory conditions. This method makes it possible to determine the concentration of plankters in the controlled volume of the DHC and perform photostimulation with different levels of illuminance. The depth profilometry of the phototropic response was compared with the profilometry of plankton concentration, intraspecific diversity of crustaceans according to the Pielou index, and the results of catching using the Juday net in the natural environment of the lake and during the modeling of the anthropogenic impact (introduction of table salt solution into the local area close to the registration probe). The circadian rhythm parameters were determined by the spectral analysis of the long-term registration of the phototropic response dynamics. It was noted that the inhibition of the phototropic response was the most adequate marker of the exogenous impact and the appearance of an alternating factor among the studied indicators of the state of the plankton community, namely, intraspecific diversity, synchronism of circadian rhythms, and response to paired photostimulation. The revealed patterns of behavioral responses of autochthonous zooplankton in natural and artificially modified conditions will allow for the implementation of long-term continuous control over the environmental well-being of water areas, including the collection ponds of treatment facilities, cooling ponds of nuclear power plants, and other water areas in contact with potentially hazardous facilities. The comparison of the identified patterns with the behavioral responses of euryhaline mesozooplankton will expand this method to assess the well-being of salt-water and marine reservoirs under the anthropogenic impact and will make it possible to create a continuous monitoring system. Full article

Nowadays, not only the roots, but also leaves and flowers of ginseng are increasingly popular ingredients in supplements for healthcare products and traditional medicine. The cultivation of the shade-loving crop, ginseng, is very demanding in terms of the light environment. Along with the intensity and duration, light direction is another important factor in regulating plant morphophysiology. In the current study, three lighting directions—top (T), side (S), or top + side (TS)—with an intensity of 30 ± 5 μmol·m⁻²·s⁻¹ photosynthetic photon flux density (PPFD) were employed. Generally, compared with the single T lighting, the composite lighting direction, TS, was more effective in shaping the ginseng with improved characteristics, including shortened, thick shoots; enlarged, thick leaves; more leaf trichomes; earlier flower bud formation; and enhanced photosynthesis. The single S light resulted in the worst growth parameters and strongly inhibited the flower bud formation, leading to the latest flower bud observation. Additionally, the S lighting acted as a positive factor in increasing the leaf thickness and number of trichomes on the leaf adaxial surface. However, the participation of the T lighting weakened these traits. Overall, the TS lighting was the optimal direction for improving the growth and development traits in ginseng. This preliminary research may provide new ideas and orientations in ginseng cultivation lodging resistance and improving the supply of ginseng roots, leaves, and flowers to the market. Full article

Vegetative to reproductive phase transition in phototropic plants is an important developmental process and is sequentially mediated by the expression of micro-RNA MIR172. To obtain insight into the evolution, adaptation, and function of MIR172 in photophilic rice and its wild relatives, we analyzed the genescape of a 100 kb segment harboring MIR172 homologs from 11 genomes. The expression analysis of MIR172 revealed its incremental accumulation from the 2-leaf to 10-leaf stage, with maximum expression coinciding with the flag-leaf stage in rice. Nonetheless, the microsynteny analysis of MIR172s revealed collinearity within the genus Oryza, but a loss of synteny was observed in (i) MIR172A in O. barthii (AA) and O. glaberima (AA); (ii) MIR172B in O. brachyantha (FF); and (iii) MIR172C in O. punctata (BB). Phylogenetic analysis of precursor sequences/region of MIR172 revealed a distinct tri-modal clade of evolution. The genomic information generated in this investigation through comparative analysis of MIRNA, suggests mature MIR172s to have evolved in a disruptive and conservative mode amongst all Oryza species with a common origin of descent. Further, the phylogenomic delineation provided an insight into the adaptation and molecular evolution of MIR172 to changing environmental conditions (biotic and abiotic) of phototropic rice through natural selection and the opportunity to harness untapped genomic regions from rice wild relatives (RWR). Full article

Tuta absoluta (Meyrick), a leafminer that damages tomato leaves, terminal buds, flowers, and fruits, is a destructive tomato pest and is responsible for 80–100% of tomato yield losses globally. Different insect species have different courtship responses and phototropic flight rhythms. Improving the trapping effects of the sex pheromone and light traps is important for constructing an IPM system for T. absoluta. The present study explored the hourly distribution of T. absoluta adults caught by the sex pheromone (on the ground) and UV light (380 nm) traps in greenhouses over 24 h. The responses of males to sex pheromone (false female) lures were detected at dawn and early morning. The responses lasted for 3 h, from 05:30 (1 h before sunrise) to 08:30 (2 h after sunrise), and 95.8% of the males were caught during this period. The peak of the male responses to the sex pheromone was detected at 07:30 (from 06:30 to 07:30, 1 h after sunrise), and 80.8% of the males were caught during this period. The flight of male (proportion of 54.3%) and female (45.7%) adults toward the UV light traps occurred from 19:30 (time of sunset) to 06:30 (time of sunrise), lasted for 11 h, and exhibited a scotophase rhythm; 97.4% of the adults were caught during this period. The peak of adults flying toward the UV light traps occurred at 21:30 (from 20:30 to 21:30, 2 h after sunset). The rhythms of males’ responses to the sex pheromone and of the adults’ flight toward the UV lights can help to reveal the mechanisms of chemotactic and phototactic responses and may play a significant role in constructing an IPM system for this pest. Full article

The root is an important organ for obtaining nutrients and absorbing water and carbohydrates, and it depends on various endogenous and external environmental stimulations such as light, temperature, water, plant hormones, and metabolic constituents. Auxin, as an essential plant hormone, can mediate rooting under different light treatments. Therefore, this review focuses on summarizing the functions and mechanisms of light-regulated auxin signaling in root development. Some light-response components such as phytochromes (PHYs), cryptochromes (CRYs), phototropins (PHOTs), phytochrome-interacting factors (PIFs) and constitutive photo-morphorgenic 1 (COP1) regulate root development. Moreover, light mediates the primary root, lateral root, adventitious root, root hair, rhizoid, and seminal and crown root development via the auxin signaling transduction pathway. Additionally, the effect of light through the auxin signal on root negative phototropism, gravitropism, root greening and the root branching of plants is also illustrated. The review also summarizes diverse light target genes in response to auxin signaling during rooting. We conclude that the mechanism of light-mediated root development via auxin signaling is complex, and it mainly concerns in the differences in plant species, such as barley (Hordeum vulgare L.) and wheat (Triticum aestivum L.), changes of transcript levels and endogenous IAA content. Hence, the effect of light-involved auxin signaling on root growth and development is definitely a hot issue to explore in the horticultural studies now and in the future. Full article

Natural derivatives, such as essential oils, are presented as an alternative to classical biocides to the treatment of biocolonization. Thus, in this work, the cleaning and biocidal potential of some natural derivatives towards two natural biofilms’ growth on the same granite wall, with different microbial composition, was evaluated. For this purpose, three essential oils (EOs) (from Origanum vulgare, Thymus vulgaris and Calamintha nepeta) and their main active principles (APs) (carvacrol, thymol and R-(+)-pulegone, respectively) were embedded in a hydrogel matrix, with different combinations of EOs and APs, in order to evaluate the synergistic action of different actives. For comparative purposes, pure hydrogel and a mechanical method (brushing) were also used. Colorimetric measurements and chlorophyll a fluorescence analyses were performed to evaluate the cleaning action of the treatments on the biofilms. Overall, the EOs and APs present in the hydrogel proved to be reliable treatments to limit natural biocolonization, with O. vulgare being one of the most effective treatments in combination with other compounds, due to the majority presence of carvacrol. Moreover, the effect of the different treatments strictly depended on the biofilm in question, as well as its ability to adhere to the substrate. Full article

Horticulture is a dynamically evolving and an ever-changing sector which needs new ideas, plant materials, and cultivating methods to produce more. Involving different mutants in breeding lines may lead to new opportunities to create new cultivating methods. pcx (procumbent plant) and tti (tortuosa internodi) Capsicum annuum mutant plants, which present abnormal stem growth, were investigated in various in vitro experiments. The pcx breeding line presents highly diverse hypocotyl growth even in the early phenophase, such as normally growing plants and the ‘laying’ habit. On the other hand, tti plants only present their elongated slender stem trait in a more mature phase. In our experiment of reorientation, we used one-sided illumination, where each of the phenotypes sensed and reacted to light, and only the pcx plants exhibited a negative gravitropic response. It was also the result that the tti plants sensed gravity, but the weak structure of the hypocotyls made them incapable of following its direction. Since the pcx plants were the only ones with an ‘antigravitropic’ growth, we used them to evaluate the time course they needed to adapt and follow the gravity vector after reorientation. The pcx plants sensing gravity adapted similarly to controls and started bending after 120 min, but those which presented as ‘anti-gravitropic’ did not respond even after 420 min. Full article

Our earlier studies showed that paired photostimulation allows the detection of pollutants in an aqueous medium according to the behavioral responses of freshwater Crustacea. The first stimulus initiated and stabilized the behavioral response. The increase in response to the second stimulus made it possible to assess the responsiveness of the zooplankton community. This paper studies the validity of this method for the detection of micro- and nanoplastic contamination of saltwater reservoirs according to the behavioral response of Artemia salina and Moina salina crustaceans. The studies were conducted in laboratory conditions using a submersible holographic camera developed by us, which ensures the in situ detection of the concentration and speed of crustaceans in a volume of up to 1 dm³, as well as makes it possible to change the intensity and duration of the attracting light. It was established that the phototropic response of crustaceans decreases in seawater at the cumulative dose of exposure to microplastics—0.15 mg∙dm⁻³∙h and nanoplastics—0.3 mg∙dm⁻³∙h. The paired photostimulation reveals the altering effect of micro- and nanoplastics in the saltwater medium no later than 3 h after their appearance, which indicates the promising potential of this method for the alarm response in monitoring the environmental well-being of water bodies. Full article

In order to survive, plants have, over the course of their evolution, developed sophisticated acclimation and defense strategies governed by complex molecular and physiological, and cellular and extracellular, signaling pathways. They are also able to respond to various stimuli in the form of tropisms; for example, phototropism or gravitropism. All of these retrograde and anterograde signaling pathways are controlled and regulated by waves of reactive oxygen species (ROS), electrical signals, calcium, and hormones, e.g., auxins. Auxins are key phytohormones involved in the regulation of plant growth and development. Acclimation responses, which include programmed cell death induction, require precise auxin perception. However, our knowledge of these pathways is limited. The Aux/IAA family of transcriptional corepressors inhibits the growth of the plant under stress conditions, in order to maintain the balance between development and acclimation responses. In this work, we demonstrate the Aux/IAA11 involvement in auxin sensing, survival, and acclimation to UV-AB, and in carrying out photosynthesis under inhibitory conditions. The tested iaa11 mutants were more susceptible to UV-AB, photosynthetic electron transport (PET) inhibitor, and synthetic endogenous auxin. Among the tested conditions, Aux/IAA11 was not repressed by excess light stress, exclusively among its phylogenetic clade. Repression of transcription by Aux/IAA11 could be important for the inhibition of ROS formation or efficiency of ROS scavenging. We also hypothesize that the demonstrated differences in the subcellular localization of the two Aux/IAA11 protein variants might indicate their regulation by alternative splicing. Our results suggest that Aux/IAA11 plays a specific role in chloroplast retrograde signaling, since it is not repressed by high (excess) light stress, exclusively among its phylogenetic clade. Full article