[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
You seem to have javascript disabled. Please note that many of the page functionalities won't work as expected without javascript enabled.
 
 
Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (1,412)

Search Parameters:
Keywords = organic labeling

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
18 pages, 2055 KiB  
Article
Think Before You Classify: The Rise of Reasoning Large Language Models for Consumer Complaint Detection and Classification
by Konstantinos I. Roumeliotis, Nikolaos D. Tselikas and Dimitrios K. Nasiopoulos
Electronics 2025, 14(6), 1070; https://doi.org/10.3390/electronics14061070 - 7 Mar 2025
Abstract
Large language models (LLMs) have demonstrated remarkable capabilities in various natural language processing (NLP) tasks, but their effectiveness in real-world consumer complaint classification without fine-tuning remains uncertain. Zero-shot classification offers a promising solution by enabling models to categorize consumer complaints without prior exposure [...] Read more.
Large language models (LLMs) have demonstrated remarkable capabilities in various natural language processing (NLP) tasks, but their effectiveness in real-world consumer complaint classification without fine-tuning remains uncertain. Zero-shot classification offers a promising solution by enabling models to categorize consumer complaints without prior exposure to labeled training data, making it valuable for handling emerging issues and dynamic complaint categories in finance. However, this task is particularly challenging, as financial complaint categories often overlap, requiring a deep understanding of nuanced language. In this study, we evaluate the zero-shot classification performance of leading LLMs and reasoning models, totaling 14 models. Specifically, we assess DeepSeek-V3, Gemini-2.0-Flash, Gemini-1.5-Pro, Anthropic’s Claude 3.5 and 3.7 Sonnet, Claude 3.5 Haiku, and OpenAI’s GPT-4o, GPT-4.5, and GPT-4o Mini, alongside reasoning models such as DeepSeek-R1, o1, and o3. Unlike traditional LLMs, reasoning models are specifically trained with reinforcement learning to exhibit advanced inferential capabilities, structured decision-making, and complex reasoning, making their application to text classification a groundbreaking advancement. The models were tasked with classifying consumer complaints submitted to the Consumer Financial Protection Bureau (CFPB) into five predefined financial classes based solely on complaint text. Performance was measured using accuracy, precision, recall, F1-score, and heatmaps to identify classification patterns. The findings highlight the strengths and limitations of both standard LLMs and reasoning models in financial text processing, providing valuable insights into their practical applications. By integrating reasoning models into classification workflows, organizations may enhance complaint resolution automation and improve customer service efficiency, marking a significant step forward in AI-driven financial text analysis. Full article
Show Figures

Figure 1

Figure 1
<p>Comparison of Model Predictions with Actual Categories Using Heatmaps.</p>
Full article ">Figure 2
<p>Comparative Classification Performance of LLMs and Reasoning Models Across Three Key Metrics: Accuracy, Cost, and Speed.</p>
Full article ">Figure 3
<p>Trade-off Between Accuracy and Cost for LLMs and Reasoning Models.</p>
Full article ">
26 pages, 9216 KiB  
Article
Shaping Consumer Perceptions of Genetically Modified Foods: The Influence of Engineering, Science, and Design Signifiers in Packaging Disclosure Statements
by Bryan F. Howell, Ellyn M. Newcomb, D. Wendell Loh, Asa R. Jackson, Michael L. Dunn and Laura K. Jefferies
Foods 2025, 14(6), 909; https://doi.org/10.3390/foods14060909 - 7 Mar 2025
Viewed by 92
Abstract
Genetically modified (GM) foods have existed for decades, and governments internationally have legislated packaging disclosure statement language that typically incorporates the words genetic, modified, and organism. In 2018, the United States implemented the National Bioengineered Food Disclosure Standard (NBFDS) and introduced the term [...] Read more.
Genetically modified (GM) foods have existed for decades, and governments internationally have legislated packaging disclosure statement language that typically incorporates the words genetic, modified, and organism. In 2018, the United States implemented the National Bioengineered Food Disclosure Standard (NBFDS) and introduced the term Bioengineered (BE) into GM disclosure language to help clarify consumer uncertainty regarding GM foods. Since then, the US consumer attitudes, perceptions, and knowledge of genetically modified foods remain negative, reflecting a contaminated interaction. Current mandated disclosure labels, utilizing engineering and science-based signifiers, are associated with this negative interaction. This research assesses whether food disclosure labels based on the signifier Design, unassociated with current contaminations, can positively impact the consumer perception of GM foods compared to the negatively contaminated science and engineering signifiers currently used. Two online studies of 1931 participants analyzed GM/BE food disclosure labels comparing four existing and six newly created engineering and science-based signifiers against four new design-based signifiers across fifteen attributes, including Price, Purchase Likelihood, Environmental Impact, Fair Trade, Safety, Nutrition, Healthfulness, Quality, Eating Experience, Comforting, Inviting, Frightening, Understandable, Ethical, and Sustainable. Across both studies, design-related labels consistently outperformed traditional engineering/science-based terms in fostering positive perceptions. However, even the best-performing labels did not fully overcome the entrenched skepticism associated with GM foods, underscoring the need for complementary strategies beyond linguistic changes. Full article
(This article belongs to the Section Sensory and Consumer Sciences)
Show Figures

Figure 1

Figure 1
<p>Schematic outline of the data collection methodology. The dark outlined boxes indicate activities in study 1, the light outlined boxes represent common activities in both study 1 and 2, and the medium green outlined boxes indicate activities in study 2. The overlapping boxes indicate shared content in both studies.</p>
Full article ">Figure 2
<p>Study 1 effect of Genetically Engineered Disclosure statements on combined participant attitudes (positive/negative, like/dislike, favorable/unfavorable). a–c: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 3
<p>Effect of Genetically Engineered Disclosure statements on economic attributes. Means greater than the 3.0 neutral midpoint were rated as increase/more likely to purchase, while those less than 3.0 were rated as decrease/less likely to purchase. a–d: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 4
<p>Effect of Genetically Engineered Disclosure statements on participant social attributes. a–c: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 5
<p>Study 1 effect of Genetically Engineered Disclosure statements on personal attributes. a–d: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 6
<p>Study 2 effect of Genetically Engineered Disclosure statements on combined participant attitudes (positive/negative, like/dislike, favorable/unfavorable). a,b: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 7
<p>Effect of Genetically Engineered Disclosure statements on economic attributes. Means greater than the 3.0 midpoint were rated as increase/more likely to purchase, while those less than 3.0 were rated as decrease/less likely to purchase. a,b: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 8
<p>Effect of Genetically Engineered Disclosure statements on social attributes. a–c: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 9
<p>Study 2 effect of Genetically Engineered Disclosure statements on personal attributes. a–c: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 10
<p>Effect of Genetically Engineered Disclosure statements on participant emotions. a–d: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 11
<p>Effect of Genetically Engineered Disclosure statements on participant understandability. a–d: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 12
<p>Effect of Genetically Engineered Disclosure statements on cultural attributes. a–c: Like superscripts represent no significant differences between means (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 13
<p>The green colored labels with white Bioengineered and Derived from Bioengineering type are the USDA authorized regulatory stickers. The white backgrounds with green type stating “Design, Human-Centered” and “Designed And” are proposed additions combining design signifiers with the required labels. The center image is a proposed label placed on an existing package using photoshop.</p>
Full article ">
18 pages, 2691 KiB  
Article
Dissipation of Two Acidic Herbicides in Agricultural Soil: Impact of Green Compost Application, Herbicide Rate, and Soil Moisture
by Jesús M. Marín-Benito, María Soledad Andrades, María J. Sánchez-Martín and María Sonia Rodríguez-Cruz
Agriculture 2025, 15(5), 552; https://doi.org/10.3390/agriculture15050552 - 4 Mar 2025
Viewed by 175
Abstract
The residues of the herbicides aminopyralid and iodosulfuron-methyl-sodium are phytotoxic to rotational crops. Their behaviour therefore needs to be studied under different agronomic practises and climatic conditions. The objective of this work was to use controlled laboratory conditions to study the effect of [...] Read more.
The residues of the herbicides aminopyralid and iodosulfuron-methyl-sodium are phytotoxic to rotational crops. Their behaviour therefore needs to be studied under different agronomic practises and climatic conditions. The objective of this work was to use controlled laboratory conditions to study the effect of the following: (i) the application of green compost (GC) to agricultural soil, (ii) herbicide dose, (iii) soil moisture, and (iv) soil microbial activity on the degradation rate of aminopyralid and iodosulfuron-methyl-sodium. Moreover, the formation of two iodosulfuron-methyl-sodium metabolites (metsulfuron-methyl and 2-amino-4-methyl-4-methoxy methyl-triazine) and the dissipation mechanism of labelled 14C-iodosulfuron-methyl-sodium under the same conditions were also studied. Aminopyralid and iodosulfuron-methyl showed slower degradation and half-life values (DT50) that were up to 4.6 and 1.4 times higher, respectively, in soil amended with GC, as the higher organic carbon (OC) content of this soil increased herbicide adsorption. The DT50 values were up to 2.6 and 1.9 times higher for aminopyralid and iodosulfuron-methyl sodium, respectively, in soils treated with the double herbicide dose compared to soils treated with the agronomic dose. The DT50 values for aminopyralid were up to 2.3 times higher in soils with moisture equal to 25% (H25%) of their water-holding capacity (WHC) than in soils with H50%. However, the DT50 values for iodosulfuron-methyl-sodium were slightly lower in soils with H25% than in soils with H50%, due to the formation of bound residues. A biodegradation process significantly contributes to the dissipation of both herbicides. Higher amounts of metabolite metsulfuron-methyl were formed in the GC-amended soil in all cases. The percentages of 14C extractable in soils treated with both doses of herbicide under H25% were slightly higher than in soils under higher soil moisture (H50%) over time, due to the slower degradation of 14C-(iodosulfuron-methyl+metabolites). The higher persistence of the herbicides and their metabolites when the doses were applied at a high rate in soil amended with GC and under low moisture content may have negative consequences for the rotational crop. In the case of adverse conditions leading to the persistence of herbicides in the soil during the primary crop, the intervals for crop rotation should be increased. Full article
(This article belongs to the Section Agricultural Soils)
Show Figures

Figure 1

Figure 1
<p>Dissipation kinetics of aminopyralid (<b>left</b>) and iodosulfuron-methyl-sodium (<b>right</b>) applied to unamended (S) and GC-amended (S+GC) soils at two doses (D1 = agronomic and D2 = double agronomic) under two soil moisture regimes (H25% = 25% and H50% = 50% of WHC). Bars indicate the standard deviation of the mean (n = 2).</p>
Full article ">Figure 2
<p>Formation of metsulfuron-methyl and AMMT, expressed as percentages of iodosulfuron-methyl-sodium applied initially to unamended (S) and GC-amended (S+GC) soils at two doses (D1 = agronomic and D2 = double agronomic doses) under two soil moisture regimes (H25% = 25% and H50% = 50% of WHC). Bars indicate the standard deviation of the mean (n = 2).</p>
Full article ">Figure 3
<p>Total mass balance of <sup>14</sup>C-iodosulfuron-methyl-sodium (mineralized, extractable, and non-extractable fractions) applied at two doses (D1 = agronomic and D2 = double agronomic) to unamended (S) and GC-amended (S+GC) soils under two soil moisture regimes (H25% = 25% and H50% = 50% of WHC).</p>
Full article ">
15 pages, 5039 KiB  
Article
Automated Electrical Detection of Proteins for Oral Squamous Cell Carcinoma in an Integrated Microfluidic Chip Using Multi-Frequency Impedance Cytometry and Machine Learning
by Muhammad Tayyab, Zhongtian Lin, Seyed Reza Mahmoodi and Mehdi Javanmard
Sensors 2025, 25(5), 1566; https://doi.org/10.3390/s25051566 - 4 Mar 2025
Viewed by 147
Abstract
Proteins can act as suitable biomarkers for the prognosis and diagnosis of certain conditions and can help us gain an understanding of the fundamental processes that occur inside an organism. In this work, we present a fully automated machine learning-assisted label-free method for [...] Read more.
Proteins can act as suitable biomarkers for the prognosis and diagnosis of certain conditions and can help us gain an understanding of the fundamental processes that occur inside an organism. In this work, we present a fully automated machine learning-assisted label-free method for the electrical detection of proteins in an integrated microfluidic chip using multi-frequency impedance cytometry and off-the-shelf components for realizing an automated and programmable fluid control system. We verify the robustness of our mixing method on our custom microfluidic mixer composed of polydimethylsiloxane (PDMS) serpentine channels optically using a fluorescent sandwich immunoassay and comparing the results with a commercial benchtop mixer. Salivary IL-6 is a biomarker for oral squamous cell carcinoma (OSCC), and we have demonstrated that our system can be used for the detection of quantification of Interleukin-6 (IL-6) levels in a solution using the impedance response of beads conjugated with the protein of interest, which passes through the microfluidic chip with reasonable accuracy (96%). Although we have demonstrated the detection and quantification of IL-6, our system can be adapted to any protein of interest with slight modification in the reagents and bead-binding protocols. Full article
(This article belongs to the Special Issue Advancements in Microfluidic Technologies and BioMEMS)
Show Figures

Figure 1

Figure 1
<p>System Overview. (<b>A</b>) Simplified diagram depicting the principle of operation for the electronic detection of protein antibody-conjugated beads. (<b>B</b>) Photograph of the integrated microfluidic chip consisting of the mixer and the electrical detection pore over the gold electrodes. (<b>C</b>) Commercial off-the-shelf components that make up the automated fluid control system—LabSmith, Inc. [<a href="#B29-sensors-25-01566" class="html-bibr">29</a>]. (<b>D</b>) Process flow diagram demonstrating the bird’s eye view of the step-by-step protocol for the automated detection of proteins using the automated system made up of commercial off-the-shelf components.</p>
Full article ">Figure 2
<p>Verifying robustness of the protein-bead binding protocol. (<b>A</b>) Sandwich immunoassay for verification of the bead-binding protocol for IL-6. (<b>B</b>) Commercial benchtop mixer. (<b>C</b>) Microfluidic mixer with serpentine channels used for mixing the protein-bead soup. (<b>D</b>) Microscopic image for the sandwich assay with mixing of IL-6 protein bead antibody soup performed on a benchtop commercial mixer for 1 h. (<b>E</b>) Microscopic image for the sandwich assay with mixing of IL-6 protein bead antibody soup performed on the microfluidic mixer with serpentine channels for 2 min.</p>
Full article ">Figure 3
<p>Experimental setup for the fully automated protein detection system. Experimental setup for the detection of protein-bound beads. The Faraday cage houses the microfluidic chip with integrated gold electrodes. The LabSmith fluid control system is depicted on the right. LabSmith system comprising of a programmable syringe pump, a 3-port valve, and a reservoir that interfaces to the microfluidic chip via a tube. Contents inside the Faraday cage are displayed on the left-hand side of the Faraday cage.</p>
Full article ">Figure 4
<p>Overview of Machine Learning Framework. (<b>A</b>) A representation for each of the datasets. Each individual cylinder represents a single experiment carried out for 30 min. (<b>B</b>) Pooling and division of data into mock experiment set and the training set. (<b>C</b>) Two models are used for determining the concentration of a sample. The first model predicts the concentration for each individual peak in the form of a probability. The second model uses the probability for each of the beads in the sample from the first model as an input and predicts the concentration of a sample.</p>
Full article ">Figure 5
<p>Predicted protein concentration using ML models. (<b>A</b>) Percentage of beads classified into a single concentration for 100 mock experiments. (<b>B</b>) The Area Under the Curve graph for the 10 pg/mL concentration of IL-6 experiments. (<b>C</b>) Training data are represented as a scatter plot of the percentage of beads classified into a single concentration for mock experiments. There are a total of 100 mock experiments for each concentration, which are color-coded—Blue: 0 pg/mL, Orange: 10 pg/mL, Yellow: 50 pg/mL, Purple: 100 pg/mL, Green: 500 pg/mL. (<b>D</b>) Confusion matrix for 50 mock experiments. This is the final confusion matrix representing the predicting and true class for sample concentration.</p>
Full article ">Figure 6
<p>Data pooled from two chips for OSCC prediction. (<b>A</b>) Scatter plot showing the peak amplitude values (V) for two frequencies. The blue color represents the control group, whereas the orange color represents the protein. The X-axis shows the peak amplitude values at 500 kHz, and the Y-axis shows the peak amplitude at 700 kHz. (<b>B</b>) The linear discriminant model is applied on individual beads for training the first layer of the ML model. (<b>C</b>) The first layer is applied to 100 mock experiments from the pooled data. (<b>D</b>) Confusion matrix representing the developed ML model for the prediction of oral squamous cell carcinoma (OSCC) on test data divided into 10 mock experiments.</p>
Full article ">
26 pages, 3741 KiB  
Article
Breast Cancer Classification Using an Adapted Bump-Hunting Algorithm
by Rym Nassih and Abdelaziz Berrado
Algorithms 2025, 18(3), 136; https://doi.org/10.3390/a18030136 - 3 Mar 2025
Viewed by 151
Abstract
The Patient Rule Induction Method is a data mining technique used for identifying patterns in datasets, particularly focusing on discovering regions of the chosen input space where the response variable is unusually high or low. It falls in the subgroup discovery field, where [...] Read more.
The Patient Rule Induction Method is a data mining technique used for identifying patterns in datasets, particularly focusing on discovering regions of the chosen input space where the response variable is unusually high or low. It falls in the subgroup discovery field, where finding small groups is more relevant for the explainability of the results, although it is not a classification technique, per se. In this paper, we introduce a new framework for breast cancer classification based on the PRIM. This new method involves, first, the random choice of different input spaces for each class label; second, the organization and pruning of the rules using metarules; and finally, it also includes the proposition of a way to handle the class overlapping and, hence, define the final classifier. The framework is tested on five real-life breast cancer datasets compared to three often-used algorithms for breast cancer classification: XG Boost, Logistic Regression, and Random Forest. Across the four metrics and datasets, both our PRIM-based framework and Random Forest demonstrate robust performance, with our framework showing notable accuracy and recall. XGBoost maintains strong F1-scores across the board, indicating balanced precision and recall. On the other hand, Logistic Regression, while competent, generally underperforms compared to the other algorithms, especially in terms of accuracy and recall, achieving 94.1% accuracy against 96.8% and 85.4% recall against 94.2% for the PRIM-based framework on the Wisconsin dataset. Full article
(This article belongs to the Special Issue Artificial Intelligence Algorithms for Medicine (2nd Edition))
Show Figures

Figure 1

Figure 1
<p>The top-down peeling method used in the first phase of the PRIM to locate a single box is depicted in this picture. In fact, the algorithm peels the space’s dimensions one at a time while verifying the thresholds provided and whether the goal variable is satisfied until it reaches the bump and the area where the size exceeds the threshold. On the left, we can see the different iterations until we reach the interesting box on the right. Then, it iterates the process for the next box, starting with another dimension.</p>
Full article ">Figure 2
<p>An illustration of a box. (<b>a</b>) A box defined by numeric features. (<b>b</b>) A box defined by categorical features.</p>
Full article ">Figure 3
<p>The 5 steps in the R-PRIM framework for breast cancer classification.</p>
Full article ">Figure 4
<p>An illustration of the overlap between class labels and their different cases. (<b>a</b>) The region of conflict Rc is too small compared to the other rules. (<b>b</b>) The region of conflict Rc has an average size regarding the support. (<b>c</b>) The region of conflict Rc has an important size and the classification should be reconsidered.</p>
Full article ">Figure 5
<p>An illustration of the organization of the rule space using metarules.</p>
Full article ">Figure 6
<p>Example of the construction of instance matrices. For every instance in the table, we put 1 if the instance is in the rule and 0 if it is not so that for every class, the matrix of instances is the entry for the association rule. Thus, we can find all the associations between the rules and select the most important ones to reorganize our ruleset according to confidence and support. (<b>a</b>,<b>b</b>) Both show that the procedure is the same for both classes.</p>
Full article ">Figure 7
<p>Visualization of the four measures obtained in the experiment: (<b>a</b>) the accuracy of each model; (<b>b</b>) the recall of each model; (<b>c</b>) the precision of each model; and (<b>d</b>) the F1-score of each model.</p>
Full article ">Figure 7 Cont.
<p>Visualization of the four measures obtained in the experiment: (<b>a</b>) the accuracy of each model; (<b>b</b>) the recall of each model; (<b>c</b>) the precision of each model; and (<b>d</b>) the F1-score of each model.</p>
Full article ">Figure 8
<p>Visualization of the ROC and AUC for each dataset.</p>
Full article ">Figure 8 Cont.
<p>Visualization of the ROC and AUC for each dataset.</p>
Full article ">
18 pages, 773 KiB  
Review
Exploring the Potential of Lactic Acid Bacteria Fermentation as a Clean Label Alternative for Use in Yogurt Production
by Cristiana Santos, Anabela Raymundo, Juliana Botelho Moreira and Catarina Prista
Appl. Sci. 2025, 15(5), 2686; https://doi.org/10.3390/app15052686 - 3 Mar 2025
Viewed by 346
Abstract
The demand for healthier, more natural, and sustainable foods has increased, which drives the development of clean label food products. The clean label trend is associated with developing food products with as few ingredients as possible, free of synthetic additives, and with ingredients [...] Read more.
The demand for healthier, more natural, and sustainable foods has increased, which drives the development of clean label food products. The clean label trend is associated with developing food products with as few ingredients as possible, free of synthetic additives, and with ingredients that customers understand and consider healthy. Yogurt is a fermented food with numerous health benefits, and is an excellent source of proteins, vitamins, and minerals. However, yogurt may contain chemical additives (including preservatives) that concern consumers as they are associated with potential health risks. Lactic acid bacteria (LAB) are Gram-positive, non-spore-forming, catalase-negative, and non-motile, with antimicrobial activity due to metabolites produced during fermentation. These metabolites include bacteriocins, organic acids, and exopolysaccharides, among others. Thus, in addition to its use in several technological and industrial processes in the food field, LAB present good potential for application as a clean label component for preserving foods, including yogurts. This review article provides an overview of the potential use of LAB and its compounds obtained from fermentation to act as a clean label ingredient in the preservation of yogurts. Full article
(This article belongs to the Special Issue Recent Advances in the Processing of Milk and Milk Products)
Show Figures

Figure 1

Figure 1
<p>Schematic illustration of the yogurt production process—set, stirred, and drinkable yogurt.</p>
Full article ">
24 pages, 4398 KiB  
Article
Seasonal Occurrence and Biodiversity of Insects in an Arid Ecosystem: An Ecological Study of the King Abdulaziz Royal Reserve, Saudi Arabia
by Abdulrahaman S. Alzahrani, Moutaman Ali Kehail, Sara A. Almannaa, Areej H. Alkhalifa, Abdulaziz M. Alqahtani, Mohammed H. Altalhi, Hussein H. Alkhamis, Abdullah M. Alowaifeer and Abdulwahed Fahad Alrefaei
Biology 2025, 14(3), 254; https://doi.org/10.3390/biology14030254 - 2 Mar 2025
Viewed by 288
Abstract
Each living organism thrives best in a habitat that provides optimal conditions for flourishing, reproduction, and distribution within a certain area. This study aims to investigate the seasonal variation in insect biodiversity across different sites of the King Abdulaziz Royal Reserve (KARR), located [...] Read more.
Each living organism thrives best in a habitat that provides optimal conditions for flourishing, reproduction, and distribution within a certain area. This study aims to investigate the seasonal variation in insect biodiversity across different sites of the King Abdulaziz Royal Reserve (KARR), located between E 45.19–46.57 and N 25.15–27.41, with a focus on assessing biodiversity, density and seasonal variation using active and passive methods, over the period from January to November 2023. A total of 68 sites within the study area were randomly selected for trap placement. The trapped specimens were labeled and transferred to plastic bottles half filled with 70% ethanol and then taken to the laboratory for counting and identification. Identification was based on morphological characteristics and appropriate identification keys, with the assistance of entomological expertise, and a list of local species. Simpson’s diversity index (D) was also calculated. The results revealed that, out of 6320 trapped insects, species were identified across six orders: Blattodea (termites), represented by 2 families and 2 species; Coleoptera, comprising 12 families and 38 species, of which 11 belonged to the family Tenebrionidae; Hemiptera, comprising 7 families and 9 species, 3 of which belonged to the family Lygaeidae; Hymenoptera, comprising 5 families and 15 species, 9 of which were from Formicidae; Lepidoptera, comprising 2 families and 3 species; and Orthoptera, comprising 3 families and 7 species, 4 of which were from family Acrididae. Insect biodiversity and abundance were observed to be relatively low during the winter (January–March) and autumn (October–November) seasons, while relatively higher densities were recorded during spring (May) and summer (August–September). Full article
(This article belongs to the Section Zoology)
Show Figures

Figure 1

Figure 1
<p>Map of the study area showing locations of different sites within KARR.</p>
Full article ">Figure 2
<p>Biodiversity of insects within KARR according to No. of species within each family.</p>
Full article ">Figure 3
<p>Relative abundance of insects within KARR according to No. of individual insects within each order (Lepidoptera represented less than 1%).</p>
Full article ">Figure 4
<p>Relative abundance of insects trapped during winter season (January–March 2023). Lepidoptera represented less than 1%.</p>
Full article ">Figure 5
<p>Relative abundance of insect orders trapped during spring season (May 2023).</p>
Full article ">Figure 6
<p>Relative abundance of insect order trapped during summer (August–September 2023).</p>
Full article ">Figure 7
<p>Relative abundance of insect orders trapped during autumn (October–November 2023).</p>
Full article ">
14 pages, 2970 KiB  
Article
Disorders of Iron Metabolism: A “Sharp Edge” of Deoxynivalenol-Induced Hepatotoxicity
by Haoyue Guan, Yujing Cui, Zixuan Hua, Youtian Deng, Huidan Deng and Junliang Deng
Metabolites 2025, 15(3), 165; https://doi.org/10.3390/metabo15030165 - 1 Mar 2025
Viewed by 189
Abstract
Background/Objectives: Deoxynivalenol (DON), known as vomitoxin, is one of the most common mycotoxins produced by Fusarium graminearum, with high detection rates in feed worldwide. Ferroptosis is a novel mode of cell death characterized by lipid peroxidation and the accumulation of reactive oxygen [...] Read more.
Background/Objectives: Deoxynivalenol (DON), known as vomitoxin, is one of the most common mycotoxins produced by Fusarium graminearum, with high detection rates in feed worldwide. Ferroptosis is a novel mode of cell death characterized by lipid peroxidation and the accumulation of reactive oxygen species. Although it has been demonstrated that DON can induce ferroptosis in the liver, the specific mechanisms and pathways are still unknown. The aim of this experiment was to investigate that DON can induce iron metabolism disorders in the livers of mice, thereby triggering ferroptosis and causing toxic damage to the liver. Methods: Male C57 mice were treated with DON at a 5 mg/kg BW concentration as an in vivo model. After sampling, organ coefficient monitoring, liver function test, histopathological analysis, liver Fe2+ content test, and oxidative stress-related indexes were performed. The mRNA and protein expression of Nrf2 and its downstream genes were also detected using a series of methods including quantitative real-time PCR, immunofluorescence double-labeling, and Western blotting analysis. Results: DON can cause damage to the liver of a mouse. Specifically, we found that mouse livers in the DON group exhibited pathological damage in cell necrosis, inflammatory infiltration, cytoplasmic vacuolization, elevated relative liver weight, and significant changes in liver function indexes. Meanwhile, the substantial reduction in the levels of glutathione (GSH), catalase (CAT), superoxide dismutase (SOD), and total antioxidant capacity (T-AOC) in the DON group indicated that DON also caused oxidative stress in the liver. Notably, DON exposure increased the levels of Fe2+ and Malondialdehyde (MDA) in the liver, which provides strong evidence for the occurrence of iron metabolism and ferroptosis disorders. Most importantly, mRNA and protein expression of Nrf2, an important pathway for iron metabolism and ferroptosis, along with its downstream genes, heme oxygenase (HO-1), quinone oxidoreductase (NQO1), glutathione peroxidase (GPX4), and solute carrier gene (SLC7a11), were significantly inhibited in the DON group. Conclusions: Based on our results, the Nrf2 pathway is closely associated with DON-induced iron metabolism disorders and ferroptosis in mouse livers, suggesting that maintaining hepatic iron homeostasis and activating the Nrf2 pathway may be a potential target for mitigating DON hepatotoxicity in the future. Full article
(This article belongs to the Special Issue Animal Nutritional Metabolism and Toxicosis Disease)
Show Figures

Figure 1

Figure 1
<p>Assessment of liver injury in mice. (<b>A</b>) Visceral coefficients of the control and DON groups (<span class="html-italic">n</span> = 12, values represent ± SEMs). (<b>B</b>) Detection of Fe<sup>2+</sup> content in mouse liver tissue (<span class="html-italic">n</span> = 12, values represent ± SEMs). (<b>C</b>) Assessment of mouse liver function-related indexes, including ALB, ALP, ALT, AST, GLB, and T-bil (<span class="html-italic">n</span> = 12, values represent ± SEMs). (<b>D</b>) Histopathological analysis of H&amp;E-stained mouse livers (magnification ×20, bar = 50 μm). Black arrows are inflammatory cell infiltration, yellow arrows are cell necrosis, and green arrows are cytoplasmic vacuolization. No obvious lesions were seen in the control group. * (<span class="html-italic">p</span> &lt; 0.05) vs. Control, *** (<span class="html-italic">p</span> &lt; 0.001) vs. Control.</p>
Full article ">Figure 2
<p>Changes in oxidative stress-related indices in mouse liver. Activities of SOD, GSH, T-AOC, MDA, and CAT in mouse liver cells (<span class="html-italic">n</span> = 12, values represent ± SEMs), * (<span class="html-italic">p</span> &lt; 0.05) vs. Control, ** (<span class="html-italic">p</span> &lt; 0.01) vs. Control.</p>
Full article ">Figure 3
<p>mRNA expression levels of the ferroptosis signature pathway and Nrf2 and its downstream pathways in mouse livers (<span class="html-italic">n</span> = 12, values represent ± SEMs), ** (<span class="html-italic">p &lt;</span> 0.01) vs. Control, *** (<span class="html-italic">p</span> &lt; 0.001) vs. Control.</p>
Full article ">Figure 4
<p>Immunofluorescence double-staining results of the signature pathway of ferroptosis as well as Nrf2 and its downstream pathway in mouse livers (magnification ×10, bar = 100 μm). (<b>A</b>) Diagram of double-staining results of GPX4 (red) + COX-2 (green) in mouse livers. (<b>B</b>) Double-staining results of mouse liver NQO1 (red) + HO-1 (green). (<b>C</b>) Diagram of double-staining results of mouse liver Nrf2 (red) + SLC7a11 (green). (<b>D</b>) Immunofluorescence staining fluorescence intensity number values (<span class="html-italic">n</span> = 3, values represent ± SEMs), * (<span class="html-italic">p &lt;</span> 0.05) vs. Control, ** (<span class="html-italic">p</span> &lt; 0.01) vs. Control.</p>
Full article ">Figure 5
<p>Results of immunoblotting analysis of ferroptosis signature pathways as well as Nrf2 and its downstream pathways in mouse livers. (<b>A</b>) Nrf2, NQO1, HO-1, GPX4, SLC7a11, COX-2, and β-actin protein blot bands. (<b>B</b>) Nrf2, NQO1, HO-1, GPX4, SLC7a11, and COX-2 protein expression levels (<span class="html-italic">n</span> = 3, values represent ± SEMs), * (<span class="html-italic">p</span> &lt; 0.05) vs. Control, ** (<span class="html-italic">p</span> &lt; 0.01) vs. Control.</p>
Full article ">
17 pages, 1912 KiB  
Protocol
Tn5-Labeled DNA-FISH: An Optimized Probe Preparation Method for Probing Genome Architecture
by Yang Yang, Gengzhan Chen, Tong Gao, Duo Ning, Yuqing Deng, Zhongyuan (Simon) Tian and Meizhen Zheng
Int. J. Mol. Sci. 2025, 26(5), 2224; https://doi.org/10.3390/ijms26052224 - 28 Feb 2025
Viewed by 248
Abstract
Three-dimensional genome organization reveals that gene regulatory elements, which are linearly distant on the genome, can spatially interact with target genes to regulate their expression. DNA fluorescence in situ hybridization (DNA-FISH) is an efficient method for studying the spatial proximity of genomic loci. [...] Read more.
Three-dimensional genome organization reveals that gene regulatory elements, which are linearly distant on the genome, can spatially interact with target genes to regulate their expression. DNA fluorescence in situ hybridization (DNA-FISH) is an efficient method for studying the spatial proximity of genomic loci. In this study, we developed an optimized Tn5 transposome-based DNA-FISH method, termed Tn5-labeled DNA-FISH. This approach amplifies the target region and uses a self-assembled Tn5 transposome to simultaneously fragment the DNA into ~100 bp segments and label it with fluorescent oligonucleotides in a single step. This method enables the preparation of probes for regions as small as 4 kb and visualizes both endogenous and exogenous genomic loci at kb resolution. Tn5-labeled DNA-FISH provides a streamlined and cost-effective tool for probe generation, facilitating the investigation of chromatin spatial conformations, gene interactions, and genome architecture. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
Show Figures

Figure 1

Figure 1
<p>The overall workflow of Tn5-labeled DNA-FISH is illustrated. (<b>A</b>) The target genomic region is amplified by PCR with specific primers. (<b>B</b>) Fluorescently labeled adaptors (ME) are synthesized and annealed, with the Cy5.5 fluorophore indicated by the red star. ME_A (dark blue) or ME_B (blue) is annealed with ME (light blue) to form Adaptor A and Adaptor B, respectively. The blue bars correspond to the DNA sequences of the oligonucleotides. (<b>C</b>) The fluorescently labeled adaptors are assembled with Tn5 transposase to form the Tn5-labeled transposome. (<b>D</b>) The Tn5-labeled transposome performs fragmentation on the target genomic DNA, simultaneously fragmenting the DNA and integrating the fluorescently labeled adaptors to generate labeled probes. (<b>E</b>) The labeled probes are then used for DNA-FISH experiments.</p>
Full article ">Figure 2
<p>Amplification of target genomic loci. (<b>A</b>) PCR amplification of the target locus <span class="html-italic">l(1)G0020</span> on the <span class="html-italic">Drosophila</span> X chromosome using S2 genomic DNA as the template. (<b>B</b>) PCR amplification of the target locus from the EBV genome (B95-8 strain) using GM12878 genomic DNA containing the EBV genome as the template. In both (<b>A</b>,<b>B</b>), the top bars represent the chromosome, the dashed line indicates the region of interest, blue bars represent negative-strand genes, and green bars represent positive-strand genes, the black arrows indicate the target amplification regions. Capillary electrophoresis confirms the presence of single, specific amplicons (red arrows), with the purple peak representing the marker.</p>
Full article ">Figure 3
<p>Fluorescently labeled adaptor synthesis, assembly, and probe size determination. (<b>A</b>) PAGE gel analysis of Adaptor A (ME and ME_A) and Adaptor B (ME and ME_B) annealing. The Cy5.5 fluorophore is shown in red. ME_A (dark blue) or ME_B (blue) is annealed with ME (light blue) to form Adaptor A and Adaptor B, respectively. The annealing of ME and ME_A/ME_B oligos at a molar ratio of 1:1.1 resulted in slower migration and distinct, specific bands, indicating successful annealing with the correct proportions. The white line indicated a splicing between ME_B lane and marker lane. (<b>B</b>) DNA fragment size distribution after Tn5-labeled transposome-mediated fragmentation of the <span class="html-italic">Drosophila l</span>(<span class="html-italic">1</span>)<span class="html-italic">G0020</span> locus amplicon. (<b>C</b>) DNA fragment size distribution after Tn5-labeled transposome-mediated fragmentation of the EBV fragment amplicon. In both (<b>B</b>,<b>C</b>), the DNA fragments are predominantly around 150 bp, with red arrows indicating the peak positions and the purple peak representing the marker.</p>
Full article ">Figure 4
<p>Application of Tn5-labeled DNA-FISH for imaging endogenous and exogenous genomic loci. (<b>A</b>) Tn5-labeled probes targeting the <span class="html-italic">Drosophila</span> X chromosome <span class="html-italic">l(1)G0020</span> locus were hybridized with Kc167 cells (female with two X chromosomes) and S2 cells (male with one X chromosome). DNA-FISH results show two foci in Kc167 cells and one focus in S2 cells, consistent with the localization of the target region on the X chromosome. Probes for <span class="html-italic">l(1)G0020</span> are labeled in red (Cy5.5), and nuclei are stained with DAPI (blue). (<b>B</b>) Tn5-labeled probes targeting the EBV genome were hybridized with RAMOS cells (EBV-negative) and GM12878 cells (EBV-positive). DNA-FISH results show multiple EBV episomes in GM12878 cells, while no fluorescence signal is detected in RAMOS cells, demonstrating high probe specificity. Probes for the EBV genome are labeled in red (Cy5.5), and nuclei are stained with DAPI (blue).</p>
Full article ">
26 pages, 6968 KiB  
Article
Construction of a Multi-Source, Heterogeneous Rice Disease and Pest Knowledge Graph Based on the MARBC Model
by Chunchun Li, Siyi Yang, Dong Liang, Peng Chen and Wei Dong
Agronomy 2025, 15(3), 566; https://doi.org/10.3390/agronomy15030566 - 25 Feb 2025
Viewed by 121
Abstract
Diseases and pests have a significant impact on rice production, affecting both yield and quality. Therefore, their effective management and control are crucial for successful rice cultivation. However, current research based on rice diseases and pests (RDPs) encounters challenges such as data scarcity, [...] Read more.
Diseases and pests have a significant impact on rice production, affecting both yield and quality. Therefore, their effective management and control are crucial for successful rice cultivation. However, current research based on rice diseases and pests (RDPs) encounters challenges such as data scarcity, the integration of multi-source heterogeneous data and usability issues related to knowledge graphs. To tackle these issues, this paper proposes a novel entity and relationship extraction model called Multi-head Attention RoBERTa BiLSTM CRF (MARBC). Specifically, the MARBC model utilizes RoBERTa to obtain related word vector representations, and then employs BiLSTM to extract features from within the input sequences. By integrating a multi-head attention mechanism, the model retrieves contextual information and relevance from the text, enhancing the accuracy and depth of the knowledge graph. Additionally, Conditional Random Fields are used to model sequence labeling for entities and relationships. Experimental results demonstrate the model’s impressive performance, achieving precision, recall, and F1 scores of 95.31%, 93.58%, and 94.44%, respectively. Furthermore, this paper constructs a dedicated knowledge graph for RDPs from both ontology and data layers. By effectively integrating and organizing multi-source heterogeneous RDP data, this paper provides valuable resources and decision support for agricultural researchers and farmers. Full article
(This article belongs to the Section Pest and Disease Management)
Show Figures

Figure 1

Figure 1
<p>Block diagram of constructing knowledge graph for RDPs.</p>
Full article ">Figure 2
<p>Flowchart for collecting multi-source heterogeneous RDP data.</p>
Full article ">Figure 3
<p>Extraction process of semi-structured data.</p>
Full article ">Figure 4
<p>Example of RDP data annotation based on Label-Studio tool.</p>
Full article ">Figure 5
<p>Example of RDP data annotation based on BIESO.</p>
Full article ">Figure 6
<p>Ontology construction process of RDP.</p>
Full article ">Figure 7
<p>RDP ontology hierarchical structure diagram.</p>
Full article ">Figure 8
<p>Partial construction of RDP ontology layer based on Protégé.</p>
Full article ">Figure 9
<p>Framework of MARBC model.</p>
Full article ">Figure 10
<p>Input representations of RoBERTa model.</p>
Full article ">Figure 11
<p>LSTM structure.</p>
Full article ">Figure 12
<p>Multi-head attention mechanism.</p>
Full article ">Figure 13
<p>Comparison of different models’ evaluation results.</p>
Full article ">Figure 14
<p>Entity labeling results of MARBC model.</p>
Full article ">Figure 15
<p>Head entity label comparison results. (Model A represents BiLSTM-CRF, Model B represents BERT-BiLSTM-CRF, and Model C represents MARBC).</p>
Full article ">Figure 16
<p>Entity relationship label comparison results. (Model A represents BiLSTM-CRF, Model B represents BERT-BiLSTM-CRF, and Model C represents MARBC).</p>
Full article ">Figure 17
<p>Example visualization of RDP knowledge graph.</p>
Full article ">Figure 18
<p>Example of question-answering system based on RDP knowledge graph.</p>
Full article ">
52 pages, 16989 KiB  
Review
Dietary Guidance, Sensory, Health and Safety Considerations When Choosing Low and No-Calorie Sweeteners
by John L. Sievenpiper, Sidd Purkayastha, V. Lee Grotz, Margaux Mora, Jing Zhou, Katherine Hennings, Cynthia M. Goody and Kristen Germana
Nutrients 2025, 17(5), 793; https://doi.org/10.3390/nu17050793 - 25 Feb 2025
Viewed by 531
Abstract
The growing global focus on the adverse health conditions associated with excessive sugar consumption has prompted health and policy organizations as well as the public to take a more mindful approach to health and wellness. In response, food and beverage companies have proactively [...] Read more.
The growing global focus on the adverse health conditions associated with excessive sugar consumption has prompted health and policy organizations as well as the public to take a more mindful approach to health and wellness. In response, food and beverage companies have proactively innovated and reformulated their product portfolios to incorporate low and no-calorie sweeteners (LNCSs) as viable alternatives to sugar. LNCSs offer an effective and safe approach to delivering sweetness to foods and beverages and reducing calories and sugar intake while contributing to the enjoyment of eating. The objective of this paper is to enhance the understanding of LNCSs segmentation and definitions, dietary consumption and reduction guidance, front-of-package labeling, taste and sensory perception and physiology, metabolic efficacy and impact, as well as the overall safety of LNCSs and sugar. Full article
(This article belongs to the Special Issue Sugar, Sweeteners Intake and Metabolic Health)
Show Figures

Figure 1

Figure 1
<p>Schematic for Categorizing Sweeteners.</p>
Full article ">Figure 2
<p>Front-of-package labels around the world. Reprinted with permission from the Global Research Program at UNC-Chapel Hill.</p>
Full article ">Figure 3
<p>Sweet taste receptor protein and potential binding sites for sweet tasting molecules. Molecules can bind to the Venus flytrap, cysteine-rich, or transmembrane domains of the T1R2 or T1R3 to initiate sweet taste signaling. Figure created using <a href="http://biorender.com" target="_blank">biorender.com</a>.</p>
Full article ">Figure 4
<p>Pooled direct, indirect, and network effect estimates of the effect of the substitution of NNSBs for SSBs (“Intended substitution”) on established intermediate cardiometabolic outcomes. Reproduced from McGlynn et al. [<a href="#B152-nutrients-17-00793" class="html-bibr">152</a>] under the terms of an open access CC-BY license.</p>
Full article ">Figure 5
<p>Pooled analyses of estimates of the association of the substitution of NNSBs for SSBs (“Intended substitution”) with clinical cardiometabolic outcomes. Reproduced from Lee et al. [<a href="#B160-nutrients-17-00793" class="html-bibr">160</a>] with permission from the American Diabetes Association.</p>
Full article ">
15 pages, 3579 KiB  
Article
Fate of Fertilizer Nitrogen in the Field 2 Years After Biochar Application
by Lining Zhao, Weijun Yang, Zi Wang, Jinshan Zhang, Liyue Zhang, Mei Yang, Xiangrui Meng and Lei Ma
Plants 2025, 14(5), 682; https://doi.org/10.3390/plants14050682 - 23 Feb 2025
Viewed by 144
Abstract
This study aimed to clarify the scientific quantification of fertilizer nitrogen (N) uptake and utilization, its destination, and its residual distribution in the soil at a depth of 0–30 cm after biochar application using 15N tracer technology. The purpose was to provide [...] Read more.
This study aimed to clarify the scientific quantification of fertilizer nitrogen (N) uptake and utilization, its destination, and its residual distribution in the soil at a depth of 0–30 cm after biochar application using 15N tracer technology. The purpose was to provide a theoretical basis for developing a scientific application strategy for N fertilizer and biochar in irrigated farmland areas. Two levels of N fertilizer application were set up using the 15N labeling method in microareas of large fields: the regular amount of N fertilizer (N1: 300 kg·ha−1) and a reduction of N fertilizer by 15% (N2: 255 kg·ha−1). Further, three levels of biochar application were set up: no biochar (B0: 0 kg·ha−1), a low amount of biochar (B1: 10 × 103 kg·ha−1), and a medium amount of biochar (B2: 20 × 103 kg·ha−1). The tested biochar was derived from corn stover (maize straw). The natural abundance of 15N-labeled fertilizer N, the total N content of each aboveground organ, and the total N content of soil at a depth of 0–30 cm in a spring wheat field at maturity were determined, and the yield was measured in the corresponding plots. The proportion of 15N-labeled fertilizer N uptake by each organ of spring wheat and the soil N uptake was 20.60–35.32% and more than 64.68%, respectively. Moreover, the proportion of soil N uptake showed a decreasing trend with an increase in biochar application. The spring wheat N uptake and utilization rate, the residue rate in the soil at a depth of 0–30 cm, the total utilization rate, and the rate of loss of 15N-labeled fertilizer N ranged from 15.21% to 29.61%, 23.33% to 28.93%, 38.54% to 58.54%, and 41.46% to 61.46%, respectively. The spring wheat N fertilizer utilization rate, fertilizer N residue rate in soil, and total fertilizer N utilization rate all increased gradually with an increase in biochar application, except for the N loss rate, which decreased gradually. When N fertilizer reduction was combined with medium biochar (B2N2), the yield of spring wheat significantly improved, mainly due to an increase in the number of grains in spikes. Under this treatment, the number of grains in spikes of spring wheat was 41.9, and the yield reached 7075.54 kg·ha−1, which was an increase of 9.69–28.25% and 10.91–25.35%, respectively, compared with other treatments. Yield increased by up to 25.35%, and nitrogen loss decreased by 48.24% under the B2N2 treatment. Biochar application could promote the amount and proportion of fertilizer N uptake in various organs of spring wheat as well as in the soil at a depth of 0–30 cm. In this study, a 15% reduction in N fertilizer (255 kg·ha−1) combined with 20 × 103 kg·ha−1 biochar application initially helped achieve the goal of increasing spring wheat yield and N fertilizer uptake, as well as improving fertilizer N utilization, providing an optimal scientific application strategy for N fertilizer and biochar in the farmland of the irrigation area. These results substantiate the hypothesis that biochar application enhances spring wheat (Triticum aestivum L.) assimilation of fertilizer-derived nitrogen (15N) while concomitantly improving fertilizer nitrogen retention in the soil matrix, which could provide a sustainable framework for nitrogen management in irrigated farmlands. Full article
Show Figures

Figure 1

Figure 1
<p>Nitrogen accumulation in aboveground organs of plants at maturity stage. Note: Different letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) among the treatments of biochar and nitrogen fertilizer application, while the same letters indicate no significant differences among the treatments.</p>
Full article ">Figure 2
<p><sup>15</sup>N abundance in aboveground organs of spring wheat plants at maturity stage. Note: Different letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) among the treatments of biochar and nitrogen fertilizer application, while the same letters indicate no significant differences among the treatments, which is the same as below.</p>
Full article ">Figure 3
<p>Absorption proportion of <sup>15</sup>N-labeled fertilizer N and soil N in plant at maturity stage (%). Different N fertilizer sources for (<b>a</b>) stem + leaf sheath, (<b>b</b>) leaf, (<b>c</b>) pin shell + rachis, and (<b>d</b>) kernel. Different letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) among the treatments.</p>
Full article ">Figure 4
<p>Absorption and utilization of <sup>15</sup>N-labeled fertilizer N by aboveground organs of spring wheat. The fertilizer N uptake and utilization rate of (<b>a</b>) stem + leaf sheath, (<b>b</b>) of leaf, (<b>c</b>) pin shell + rachis, and (<b>d</b>) kernel. Different letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) among the treatments.</p>
Full article ">Figure 5
<p>Effects of combined application of carbon and N on soil fertilizer <sup>15</sup>N abundance, soil total N content, and soil residue amount.</p>
Full article ">Figure 6
<p>Fate of fertilizer N. (<b>a</b>) Utilization rate of <sup>15</sup>N-labeled fertilizer N of plants and soil. (<b>b</b>) Total recovery rate and loss rate of <sup>15</sup>N. Different letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) among the treatments.</p>
Full article ">Figure 7
<p>Spring wheat yield.</p>
Full article ">Figure 8
<p>Analysis of the relationships between yield and N content of the plant, N absorption of plant fertilizer, and N loss rate. Different colors in the figure indicate whether the correlation between different indicators is significant, where “*” indicates a weak correlation; ** indicates moderately relevant. “***” indicates strong correlation; “****” is very relevant. The <span class="html-italic">p</span>-value is used to test whether the correlation is significant. The meaning is as follows: the red line is 0.001 &lt; x ≤ 0.01, indicating a very significant correlation; The dark blue line indicates 0.01 &lt; x ≤ 0.05, indicating a significant correlation; The sky blue line is x &gt; 0.05, indicating no significant correlation.</p>
Full article ">Figure 9
<p>Microarea diagram.</p>
Full article ">
20 pages, 1744 KiB  
Article
Glutathione Contributes to Caloric Restriction-Triggered Shift in Taurine Homeostasis
by András Gregor, Manuel Malleier, Arturo Auñon-Lopez, Sandra Auernigg-Haselmaier, Jurgen König, Marc Pignitter and Kalina Duszka
Nutrients 2025, 17(5), 777; https://doi.org/10.3390/nu17050777 - 23 Feb 2025
Viewed by 309
Abstract
Background/Objectives: Previously, we found that caloric restriction (CR) in mice increases taurine levels by stimulating hepatic synthesis, secretion into the intestine and deconjugation of taurine-conjugated bile acids (BA). Subsequently, in the intestine, taurine conjugates various molecules, including glutathione (GSH). The current study explores [...] Read more.
Background/Objectives: Previously, we found that caloric restriction (CR) in mice increases taurine levels by stimulating hepatic synthesis, secretion into the intestine and deconjugation of taurine-conjugated bile acids (BA). Subsequently, in the intestine, taurine conjugates various molecules, including glutathione (GSH). The current study explores the mechanisms behind forming taurine-GSH conjugate and its consequences for taurine, other taurine conjugates, and BA in order to improve understanding of their role in CR. Methods: The non-enzymatic conjugation of taurine and GSH was assessed and the uptake of taurine, GSH, and taurine-GSH was verified in five sections of the small intestine. Levels of taurine, gavaged 13C labeled taurine, taurine conjugates, taurine-GSH, and GSH were measured in various tissues of ad libitum and CR mice. Next, the taurine-related CR phenotype was challenged by applying the inhibitors of taurine transporter (SLC6A6) and GSH-S transferases (GST). Results: The CR-related increase in taurine in intestinal mucosa was accompanied by the uptake and distribution of taurine towards selected organs. A unique composition of taurine conjugates characterized each tissue. Although taurine-GSH conjugate could be formed in non-enzymatic reactions, GST activity contributed to taurine-related CR outcomes. Upon SLC6A6 and GST inhibition, the taurine-related parameters were affected mainly in the ileum rather than the liver. Meanwhile, BA levels were somewhat affected by GST inhibition in the ileum and in the liver by SLC6A6 inhibitor. Conclusions: The discovered CR phenotype involves a regulatory network that adjusts taurine and BA homeostasis. GSH supports these processes by conjugating taurine, impacting taurine uptake from the intestine and its availability to form other types of conjugates. Full article
(This article belongs to the Section Nutrition and Metabolism)
Show Figures

Figure 1

Figure 1
<p>Caloric restriction (CR) modulates taurine uptake from the intestine and distribution into other tissues. Solutions containing taurine GSH at the indicated concentrations were incubated for 30 min and the levels of free taurine, taurine-GSH conjugate, and free GSH were assessed (<b>A</b>). Indicated sections of mice’s small intestine were filled with taurine and GSH solution and incubated at 37 °C in DMEM solution. The concentrations of taurine (<b>B</b>), GSH (<b>C</b>), and taurine-GSH conjugate (<b>D</b>) in the surrounding solution were measured in samples collected after 30, 60, and 90 min of incubation. Following two weeks of CR or control <span class="html-italic">ad libitum</span> feeding, the levels of free taurine (<b>E</b>), gavaged taurine-<sup>13</sup>C<sub>2</sub> (<b>F</b>), taurine-glutathione (GSH) conjugate (<b>G</b>), and free GSH (<b>H</b>) were measured by applying HPLC-MS/MS in the indicated types of samples. The groups presented in panels (<b>B</b>–<b>D</b>) were compared using ANOVA and for these panels * represents statistical significance while # stands for a strong trend with <span class="html-italic">p</span> &lt; 0.05 but is not statistically significant after correction for multiple testing. Two-tailed Student’s <span class="html-italic">t</span>-test was applied to assess statistical differences between the groups in panels (<b>E</b>–<b>H</b>) and * <span class="html-italic">p</span> &lt; 0.05. Error bars indicate ±SEM. Figures in panels (<b>E</b>,<b>G</b>,<b>H</b>) represent the mean of nine to ten biological replicates. The data for panels (<b>B</b>–<b>D</b>,<b>F</b>) were prepared using five replicates and panel (<b>A</b>) using six.</p>
Full article ">Figure 2
<p>CR modulates levels of taurine conjugates in various tissues. The levels of taurine conjugates were measured in the mucosa obtained by scraping the top layer of the duodenum (<b>A</b>), jejunum (<b>B</b>), ileum (<b>C</b>), and proximal colon (<b>D</b>). Additionally, a fragment of the kidney obtained from the cross-section of the whole organ (<b>E</b>) as well as urine (<b>F</b>) were used for the measurement of taurine conjugate levels. The data was collected as an area under the curve of HPLC chromatogram peaks and presented as fold change. The regression of taurine conjugates in the listed tissues is based on covariance and depicted by a partial least square (PLS) chart (<b>G</b>). Statistical significance was assessed using a two-tailed Student’s <span class="html-italic">t</span>-test; * <span class="html-italic">p</span> &lt; 0.05; <span class="html-italic">n</span> = 6–8. Error bars stand for ±SEM.</p>
Full article ">Figure 3
<p>Inhibition of taurine transporter (SLC6A6) and GSH-S transferases (GST) affect taurine and bile acids (BA) homeostasis in the small intestine mucosa. In order to inhibit SLC6A6 and GSTs activity, mice submitted <span class="html-italic">ad libitum</span> and CR were given 1 mM imidazole-4-acetate (IAA) in drinking water or 10 mg/kg ethacrynic acid (EA) via intragastric bolus respectively. The levels of free taurine (<b>A</b>), taurine-GSH conjugate (<b>B</b>), other taurine conjugates (<b>E</b>), and BAs (<b>F</b>) were measured in the ileum mucosa applying HPLC-MS/MS. GST activity (<b>C</b>) and gene expression (<b>D</b>) were assessed in the mucosa of the ileum. Genes: <span class="html-italic">Abcc1</span>: ATP binding cassette subfamily C member 1 <span class="html-italic">Mgst1</span>: microsomal glutathione S-transferase 1; <span class="html-italic">Slc6a6</span>: solute carrier family 6 member 6; Bile acids: CA: cholic acid; CDCA: chenodeoxycholic acid; DCA: deoxycholic acid; LCA: lithocholic acid; TCA: taurocholic acid; TDCA: taurodeoxycholic acid; TLCA: taurolithocholic acid; UDCA ursodeoxycholic acid. ANOVA was applied to assess statistical differences between the groups. * represents statistical significance; # stands for a strong trend with <span class="html-italic">p</span> &lt; 0.05 but is not statistically significant after correction for multiple testing; <span class="html-italic">n</span> = 8. Error bars represent ±SEM.</p>
Full article ">Figure 4
<p>Inhibition of SLC6A6 affects hepatic taurine and BA homeostasis. The levels of free taurine (<b>A</b>), taurine-GSH conjugate (<b>B</b>), other taurine conjugates (<b>C</b>), and BAs (<b>D</b>) were measured in the liver. Gene expression (<b>E</b>) was assessed in the liver using qRT-PCR. Genes: <span class="html-italic">Ado</span>: 2-aminoethanethiol dioxygenase; <span class="html-italic">Bal</span>: bile acid CoA ligase; <span class="html-italic">Bat:</span> bile acid CoA:amino acid <span class="html-italic">N</span>-acyltransferase; <span class="html-italic">Bsep</span>: bile salt export pump; <span class="html-italic">Cdo:</span> cysteine dioxygenase; <span class="html-italic">Cyp7a1</span>: cholesterol 7-⍺-hydroxylase; <span class="html-italic">Shp</span>: small heterodimer partner. ANOVA was applied to assess statistical differences between the groups. * indicates statistical significance; # indicates a strong trend with <span class="html-italic">p</span> &lt; 0.05 higher than the threshold set at 0.008, considering correction for multiple testing. Bars indicate the mean of seven to eight biological replicates ±SEM.</p>
Full article ">
18 pages, 1250 KiB  
Article
Quality Risk Management in the Final Operational Stage of Sterile Pharmaceutical Manufacturing: A Case Study Highlighting the Management of Sustainable Related Risks in Product Sterilization, Inspection, Labeling, Packaging, and Storage Processes
by Bassam Elmadhoun, Rawidh Alsaidalani and Frank Burczynski
Sustainability 2025, 17(4), 1670; https://doi.org/10.3390/su17041670 - 17 Feb 2025
Viewed by 457
Abstract
Quality risk management, commonly known as QRM, is designed to systematically assess, control, communicate, and review potential risks at every stage of the pharmaceutical manufacturing process. The preservation of consistent product quality across the entirety of the product’s life cycle is of paramount [...] Read more.
Quality risk management, commonly known as QRM, is designed to systematically assess, control, communicate, and review potential risks at every stage of the pharmaceutical manufacturing process. The preservation of consistent product quality across the entirety of the product’s life cycle is of paramount importance. The aim of this article is to formulate a best practice guide that will assist pharmaceutical manufacturers in comprehending and implementing the International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH) Q9: quality risk management principles. A widely recognized methodology for defining and monitoring risk mitigation strategies within the pharmaceutical sector is the Failure Mode and Effects Analysis (FMEA). ICH Q9 does not, however, offer detailed instructions for applying FMEA to real-world pharmaceutical situations. We previously provided real-world case studies that identify and mitigate risks in the early stages of the manufacturing process of sterile products, such as (1) supply chain and procurement; (2) logistics and warehousing; (3) raw material dispensing; (4) glass bottle washing and handling; (5) product filling; and (6) final product receiving and handling. The final steps of the sterile manufacturing process are the subject of the case study we present in this paper. We identify and control the risks related to (I) product sterilization; (II) product inspection, labeling, and packaging; (III) the finished product’s transfer to storage; and (IV) storing finished products in a warehouse. In order to maximize decision-making and reduce the risk of regulatory noncompliance, this case study describes a proactive strategy for the identification, management, and communication of risks associated with crucial tasks. While each organization’s products and methods are distinct, with varying tolerances for risk, certain stages and associated risks are common. Consequently, the examples provided here offer relevant insights into any pharmaceutical production environment. Managing sustainability-related risks and ensuring the transparency of pharmaceutical company operations are key tasks of success today. These risks, if not managed, will cause serious problems and a negative reputation, as well as environmental and public impact. Full article
Show Figures

Figure 1

Figure 1
<p>Stages of manufacturing for 100 mL of a sterile drug product in a glass bottle.</p>
Full article ">Figure 2
<p>Risk identification questions of FMEA.</p>
Full article ">Figure 3
<p>Risk Priority Number matrix. (Green: low; Yellow: Medium; Red: High).</p>
Full article ">
19 pages, 561 KiB  
Article
Consumers’ Health and Environmental Attitudes and Local Food Purchases
by Lan Tran and Ye Su
Int. J. Environ. Res. Public Health 2025, 22(2), 298; https://doi.org/10.3390/ijerph22020298 - 17 Feb 2025
Viewed by 426
Abstract
There has been increasing interest in the health and environmental benefits of the growth of local food, especially since the COVID-19 pandemic. In the United States, local food and labels have many implications and attributes, such as organic, non-GMO, and reduced-chemical production. Therefore, [...] Read more.
There has been increasing interest in the health and environmental benefits of the growth of local food, especially since the COVID-19 pandemic. In the United States, local food and labels have many implications and attributes, such as organic, non-GMO, and reduced-chemical production. Therefore, consumers’ purchase decisions and willingness to pay for local labels with sustainable attributes are heterogeneous. This study uses a consumer survey in Missouri to examine how differences and differentiations in health and environmental attitudes affect consumers’ willingness to pay for local food. A discrete choice experiment and a structural equation model (SEM) were employed to measure how personal attitudes affect consumer’s willingness to pay for local labels (typical label and state-grown). Results show that supportive attitudes toward local farms and farmers positively affect consumer preferences for locally labeled produce, but the premiums will be lower if they are more concerned about GMOs and pesticide residue in food. No evidence was found for the effects of general environmental attitudes on willingness to pay for local food. Full article
Show Figures

Figure 1

Figure 1
<p>Proposed research model for Equation (5) (SEM).</p>
Full article ">
Back to TopTop