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21 pages, 4434 KiB  
Article
Comparative Structural and Biophysical Investigation of Lycosa erythrognatha Toxin I (LyeTx I) and Its Analog LyeTx I-b
by Amanda Neves de Souza, Gabriele de Azevedo Cardoso, Lúcio Otávio Nunes, Christopher Aisenbrey, Evgeniy Salnikov, Kelton Rodrigues de Souza, Ahmad Saad, Maria Elena de Lima, Jarbas Magalhães Resende, Burkhard Bechinger and Rodrigo Moreira Verly
Antibiotics 2025, 14(1), 66; https://doi.org/10.3390/antibiotics14010066 - 10 Jan 2025
Viewed by 178
Abstract
Background/Objectives: This study investigates the structural and biophysical properties of the wild-type antimicrobial peptide LyeTx I, isolated from the venom of the spider Lycosa erythrognatha, and its analog LyeTx I-b, designed to enhance antibacterial activity, selectivity, and membrane interactions by the acetylation [...] Read more.
Background/Objectives: This study investigates the structural and biophysical properties of the wild-type antimicrobial peptide LyeTx I, isolated from the venom of the spider Lycosa erythrognatha, and its analog LyeTx I-b, designed to enhance antibacterial activity, selectivity, and membrane interactions by the acetylation and increased amphipathicty. Methods: To understand the mechanisms behind these enhanced properties, comparative analyses of the structural, topological, biophysical, and thermodynamic aspects of the interactions between each peptide and phospholipid bilayers were evaluated. Both peptides were isotopically labeled with 2H3-Ala and 15N-Leu to facilitate structural studies via NMR spectroscopy. Results: Circular dichroism and solid-state NMR analyses revealed that, while both peptides adopt α-helical conformations in membrane mimetic environments, LyeTx I-b exhibits a more amphipathic and extended helical structure, which correlates with its enhanced membrane interaction. The thermodynamic properties of the peptide–membrane interactions were quantitatively evaluated in the presence of phospholipid bilayers using ITC and DSC, highlighting a greater propensity of LyeTx I-b to disrupt lipid vesicles. Calcein release studies reveal that both peptides cause vesicle disruption, although DLS measurements and TEM imaging indicate distinct effects on phospholipid vesicle organization. While LyeTx I-b permeabilizes anionic membrane retaining the vesicle integrity, LyeTx I promotes significant vesicle agglutination. Furthermore, DSC and calcein release assays indicate that LyeTx I-b exhibits significantly lower cytotoxicity toward eukaryotic membranes compared to LyeTx I, suggesting greater selectivity for bacterial membranes. Conclusions: Our findings provide insights into the structural and functional modifications that enhance the antimicrobial and therapeutic potential of LyeTx I-b, offering valuable guidance for the design of novel peptides targeting resistant bacterial infections and cancer. Full article
(This article belongs to the Special Issue Mechanisms of Antimicrobial Peptides on Pathogens, 2nd Edition)
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Figure 1

Figure 1
<p>CD spectra of (<b>A</b>,<b>C</b>,<b>E</b>) LyeTx I and (<b>B</b>,<b>D</b>,<b>F</b>) LyeTx I-b in the presence of (<b>A</b>,<b>B</b>) POPC/POPG (3:1, mol/mol) and (<b>C</b>,<b>D</b>) POPC/POPG (3:1, mol/mol) + 1% PEGylated POPE (pH 8.0, 20 mM Tris buffer) phospholipid vesicles, as well as in (<b>E</b>,<b>F</b>) in the presence of SDS micelles.</p>
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<p>Graphical representation of NOE correlations indicative of helical structures in the NOESY spectra of (<b>A</b>) LyeTx I and (<b>B</b>) LyeTx I-b in SDS-<span class="html-italic">d</span><sub>25</sub> micelles.</p>
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<p>NMR three-dimensional structures of (<b>A</b>–<b>C</b>) LyeTx I and (<b>D</b>–<b>F</b>) LyeTx I-b in the presence of 200 mM SDS-<span class="html-italic">d</span><sub>25</sub> micelles. (<b>A</b>,<b>D</b>) Superposition of the 10 lowest-energy structures. (<b>B</b>,<b>E</b>) Horizontal and (<b>C</b>,<b>F</b>) frontal perspectives of the most stable peptide structure. (<b>C</b>) LyeTx I and (<b>F</b>) LyeTx I-b structure with the front view of the helix. In (<b>B</b>,<b>C</b>,<b>E</b>,<b>F</b>), the hydrophilic residues are shown in green, hydrophobic residues in dark blue, and the Trp residue in orange. The N-terminals are shown in the front in (<b>E</b>,<b>F</b>) and on the left in (<b>B</b>,<b>E</b>).</p>
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<p>Solid-state NMR spectra of the selectively labeled (<b>A</b>–<b>D</b>) LyeTx I and (<b>E</b>–<b>H</b>) LyeTx I-b at 1.0 mol % in uniaxially oriented POPC/POPG (3:1, mol/mol) bilayers. (<b>A</b>,<b>C</b>,<b>E</b>,<b>G</b>) Proton-decoupled <sup>15</sup>N and (<b>B</b>,<b>D</b>,<b>F</b>,<b>H</b>) <sup>2</sup>H solid-state NMR. All spectra were recorded for alignments with the membrane normal parallel to the magnetic field of the spectrometer.</p>
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<p>Isothermal titration calorimetric curves obtained from the titration of 20 mM POPC/POPG (3:1, mol/mol) vesicles into Tris-HCl buffer pH 8.0 peptide solutions at 25 °C: (<b>A</b>) 50 μM LyeTx I; (<b>B</b>) 50 μM LyeTx I-b; (<b>C</b>) 100 μM LyeTx I; and (<b>D</b>) 100 μM LyeTx I-b. In the panels, the blue shading highlights the molar ratio, while the red line on the curves represents the fitting.</p>
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<p>Isothermal calorimetric titration of pH 8.0 Tris-HCl buffered solutions of (<b>A</b>,<b>C</b>) LyeTx I and (<b>B</b>,<b>D</b>) LyeTx I-b with 20 mM POPC/POPG (3:1, mol/mol) LUVs: (<b>A</b>) 25 μM LyeTx I; (<b>B</b>) 25 μM LyeTx I-b; (<b>C</b>) 50 μM LyeTx I; and (<b>D</b>) 50 μM LyeTx I-b. Experiments were performed at 30 °C. In the panels, the blue shading highlights the molar ratio, while the red line on the curves represents the fitting.</p>
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<p>(<b>A</b>) Hydrodynamic diameter (<span class="html-italic">D</span><sub>h</sub>) and (<b>B</b>) normalized zeta potential (ζ) of POPC/POPG (3:1, mol/mol) LUVs measured at different concentrations of LyeTx I (squares) or LyeTx I-b (circles). LUVs (500 μM) were suspended in 10 mM Tris-HCl buffer (pH 8.0) and 25 °C. Error bars indicate standard deviation from three independent experiments.</p>
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<p>Kinetics of calcein release from (<b>A</b>,<b>B</b>) POPC/POPG (3:1, mol/mol) and (<b>C</b>,<b>D</b>) POPC/Chol LUVs induced by different concentrations of (<b>A</b>,<b>C</b>) LyeTx I and (<b>B</b>,<b>D</b>) LyeTx I-b.</p>
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<p>DSC profile of the gel-to-liquid-crystalline phase transition of 3.0 mM (<b>A</b>,<b>B</b>) DMPC/DMPG and (<b>C</b>,<b>D</b>) DMPC/Chol in the presence of (<b>A</b>,<b>C</b>) LyeTx I and (<b>B</b>,<b>D</b>) LyeTx I-b at different concentrations. Dash grey lines indicate the <span class="html-italic">T</span><sub>m</sub> of the LUVs in the absence of peptides.</p>
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16 pages, 1892 KiB  
Article
Morphological and Chemical Changes in the Hemolymph of the Wax Moth Galleria mellonella Infected by the Entomopathogenic Fungus Conidiobolus coronatus
by Mieczysława Irena Boguś, Agata Kaczmarek, Anna Katarzyna Wrońska, Mikołaj Drozdowski, Lena Siecińska, Ewelina Mokijewska and Marek Gołębiowski
Pathogens 2025, 14(1), 38; https://doi.org/10.3390/pathogens14010038 - 7 Jan 2025
Viewed by 302
Abstract
Hemolymph enables communication between organs in insects and ensures necessary coordination and homeostasis. Its composition can provide important information about the physiological state of an insect and can have diagnostic significance, which might be particularly important in the case of harmful insects subjected [...] Read more.
Hemolymph enables communication between organs in insects and ensures necessary coordination and homeostasis. Its composition can provide important information about the physiological state of an insect and can have diagnostic significance, which might be particularly important in the case of harmful insects subjected to biological control. Galleria mellonella Linnaeus 1758 (Lepidoptera: Pyralidae) is a global pest to honey bee colonies. The hemolymph of its larvae was examined after infection with the soil fungus Conidiobolus coronatus (Constantin) Batko 1964 (Entomophthorales). It was found that after one hour of contact with the fungus, the volume of the hemolymph increased while its total protein content decreased. In larvae with a high pathogen load, just before death, hemolymph volume decreased to nearly initial levels, while total protein content and synthesis (incorporation of 35S-labeled methionine) increased. The hemolymph polypeptide profile (SDS-PAGE followed by autoradiography) of infected insects was significantly different from that of healthy larvae. Hemocytes of infected larvae did not surround the fungal hyphae, although they encapsulated small foreign bodies (phase contrast microscopy). Infection had a negative effect on hemocytes, causing oenocyte and spherulocyte deformation, granulocyte degranulation, plasmatocyte vacuolization, and hemocyte disintegration. GC-MS analysis revealed the presence of 21 compounds in the hemolymph of control insects. C. coronatus infection caused the appearance of 5 fatty acids absent in healthy larvae (heptanoic, decanoic, adipic, suberic, tridecanoic), the disappearance of 4 compounds (monopalmitoylglycerol, monooleoylglycerol, monostearin, and cholesterol), and changes in the concentrations of 8 compounds. It remains an open question whether substances appearing in the hemolymph of infected insects are a product of the fungus or if they are released from the insect tissues damaged by the growing hyphae. Full article
(This article belongs to the Section Fungal Pathogens)
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Figure 1
<p>Developmental changes in the body weight (<b>A</b>), hemolymph volume (<b>B</b>), and hemolymph protein content (<b>C</b>) of the <span class="html-italic">Galleria mellonella</span> last instar larvae. Bars represent mean values ± standard deviation. Data statistically different (one-way ANOVA, Tukey’s post hoc test, <span class="html-italic">p</span> range 0.0439–0.0001) are marked with the same letter. Number of used insects: (<b>A</b>) N = 4–50, (<b>B</b>) N = 5–6, (<b>C</b>) N = 4–8. Age of insects: 0dL7—freshly molted last instar larvae (0–2 h after molting), 1dL7–8dL7 means consecutive days of the last larval instar, respectively. Formation of pupae begins on the eighth day of the final larval instar (8dL7).</p>
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<p>Effect of fungal infection on hemolymph protein pattern (<b>A</b>) and synthesis (<b>B</b>) in <span class="html-italic">Galleria mellonella</span> larvae. 1—Marker, 2—control 1dL7, 3—1dL7 1 hpi, 4—1dL7 24 hpi, 5—1dL7 48 hpi, 6—control 5dL7, 7—5dL7 1 hpi, 8—5dL7 24 hpi, 9—5dL7 48 hpi. Blue arrows indicate proteins whose concentration fluctuates during normal development, and red arrows show proteins appearing after infection. LSP—larval storage protein, hpi—hours post-infection, kDa—kilodalton.</p>
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<p>Effect of <span class="html-italic">C. coronatus</span> infection on <span class="html-italic">G. mellonella</span>: hemolymph of untreated 5dL7 controls (<b>A</b>–<b>C</b>), hemolymph of infected 5dL7 larvae (<b>D</b>–<b>H</b>), trachea from infected larva (<b>I</b>). DC—fragment of disintegrated cell, GR—granulocyte, HE—hemocyte, HY—<span class="html-italic">C. coronatus</span> hyphae, OE—oenocyte, PL—plasmatocyte, SP—spherulocyte, TR—trachea. Scale bars—20 μm.</p>
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13 pages, 1675 KiB  
Article
In Vivo Imaging of Cardiac Attachment of TcI and TcII Variants of Trypanosoma cruzi in a Zebrafish Model
by Victoria E. Rodriguez-Castellanos, Cristhian David Perdomo-Gómez, Juan Carlos Santos-Barbosa, Manu Forero-Shelton, Verónica Akle and John M. González
Pathogens 2025, 14(1), 25; https://doi.org/10.3390/pathogens14010025 - 1 Jan 2025
Viewed by 745
Abstract
Trypanosoma cruzi, the etiological agent of Chagas disease, is a parasite known for its diverse genotypic variants, or Discrete Typing Units (DTUs), which have been associated with varying degrees of tissue involvement. However, aspects such as parasite attachment remain unclear. It has [...] Read more.
Trypanosoma cruzi, the etiological agent of Chagas disease, is a parasite known for its diverse genotypic variants, or Discrete Typing Units (DTUs), which have been associated with varying degrees of tissue involvement. However, aspects such as parasite attachment remain unclear. It has been suggested that the TcI genotype is associated with cardiac infection, the most common involved site in chronic human infection, while TcII is associated with digestive tract involvement. Traditional models for T. cruzi infection provide limited in vivo observation, making it challenging to observe the dynamics of parasite-host interactions. This study evaluates the cardiac attachment of trypomastigotes from TcI and TcII DTUs in zebrafish larvae. Labeled trypomastigotes were injected in the duct of Cuvier of zebrafish larvae and tracked by stereomicroscopy and light-sheet fluorescence microscopy (LSFM). Remarkably, it was possible to observe TcI parasites adhered to the atrium, atrioventricular valve, and circulatory system, while TcII trypomastigotes demonstrated adhesion to the atrium, atrioventricular valve, and yolk sac extension. When TcI and TcII were simultaneously injected, they both attached to the heart; however, more of the TcII trypomastigotes were observed attached to this organ. Although TcII DTU has previously been associated with digestive tissue infection, both parasite variants showed cardiac tissue attachment in this in vivo model. Full article
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Graphical abstract

Graphical abstract
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<p>Detection of fluorescently labeled <span class="html-italic">T. cruzi</span> trypomastigotes. (<b>a</b>) Flow cytometry dot plot of forward scatter (FSC) versus side scatter (SSC) of TcI trypomastigotes. (<b>b</b>) Upper panel histogram of unlabeled TcI trypomastigotes as the control group, At 670 nm detection. Lower panel histogram of TcI trypomastigotes labeled with CTFR at 670 nm detections. (<b>c</b>) Standardized droplet of 160 μm diameter for microinjection under stereomicroscopy to estimate live parasites by their movement.</p>
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<p>(<b>a</b>) Zebrafish larvae were injected with <span class="html-italic">T. cruzi</span> TcII trypomastigotes found attached to the heart valves of the larva under stereomicroscopy in the upper panel. Two trypomastigotes can be observed under LSFM 4 h after microinjection in the lower panel. (<b>b</b>) The upper panel shows the migration of the parasite towards the yolk sac extension under stereomicroscopy. The lower panel shows the same larva 4 h after microinjection under LSFM with a subtle movement towards the end of the yolk sac extension. (<b>c</b>) Zebrafish larvae injected with TcI trypomastigotes, one of which was attached to the cardinal vein (dotted blue line), observed under stereomicroscopy. (<b>d</b>) TcI trypomastigote attached to the dorsal aorta (dotted red line), observed under stereomicroscopy. The images shown came from different larvae.</p>
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<p>Dot plot of flow Cytometry assay with <span class="html-italic">T. cruzi</span> trypomastigotes. (<b>a</b>) The unlabeled population (P1) served as the control. (<b>b</b>) Region P2 represents TcII trypomastigotes labeled with CTCFSE, while region P3 represents TcI trypomastigotes labeled with CTFR.</p>
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<p>Schematic representation of zebrafish larvae heart showing the locations where trypomastigotes were detected using LSFM. Parasites (purple figures) were observed to be attached mainly to the heart valves and atrium, independent of DTU. V: Ventricle, A: Atrium, BA: Bulbus arteriosus. Figure was made using <a href="http://BioRender.com" target="_blank">BioRender.com</a>.</p>
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13 pages, 255 KiB  
Article
Negotiating Wasatiyyah: Soft Securitization and Civic Activism in Ukraine
by Oleg Yarosh
Religions 2025, 16(1), 18; https://doi.org/10.3390/rel16010018 - 29 Dec 2024
Viewed by 400
Abstract
This article addresses religious governance in Ukraine in relation to local Muslim organizations associated with the Council of European Muslims (CEM), formerly known as the Federation of Islamic Organizations in Europe (FIOE). Specifically, it focuses on the Council of Ukrainian Muslims (CUM), formerly [...] Read more.
This article addresses religious governance in Ukraine in relation to local Muslim organizations associated with the Council of European Muslims (CEM), formerly known as the Federation of Islamic Organizations in Europe (FIOE). Specifically, it focuses on the Council of Ukrainian Muslims (CUM), formerly known as Alraid, and the Spiritual Administrations of Ukrainian Muslims Ummah (SAUM Ummah). Addressing the policymaking aspect of securitization, the article concerns state policies in Ukraine as ‘soft securitization’, meaning the execution of limited interventions and restrictions on the activities of Muslim organizations in Ukraine, particularly those at the focus of this article and labeled as ‘Islamist’. The FIOE in Europe and Alraid in Ukraine developed a response to these policies, informed by the wasatiyyah (moderation) post-Islamist ideology. The article analyzes how the wasatiyyah ideology was appropriated and negotiated in the discourse of these Ukrainian organizations, and how it informed their civic activism. Full article
11 pages, 236 KiB  
Article
Evaluating Different Supplements on the Growth Performance and Bioconversion Efficiency of Kitchen Waste by Black Soldier Fly Larvae
by Lifei Chen, Meng Xu, Rongsheng Shang, Yizhen Xin, Guiying Wang, Yifan Li, Zhuoya Wang, Xiangyu Wang, Haoyang Sun and Lusheng Li
Insects 2025, 16(1), 22; https://doi.org/10.3390/insects16010022 - 29 Dec 2024
Viewed by 517
Abstract
Black soldier fly larvae (BSFL) convert kitchen waste into high-quality insect feed. However, the optimal amount of auxiliary materials needed to improve the physical and chemical properties of kitchen waste and enhance BSFL bioconversion efficiency remains unresolved. In this study, maize stover and [...] Read more.
Black soldier fly larvae (BSFL) convert kitchen waste into high-quality insect feed. However, the optimal amount of auxiliary materials needed to improve the physical and chemical properties of kitchen waste and enhance BSFL bioconversion efficiency remains unresolved. In this study, maize stover and BSFL frass were added to kitchen waste (in groups G2 and G3, respectively) to explore their effects on the growth performance and bioconversion efficiency of BSFL. The group with only kitchen waste, without the addition of maize stover or BSF frass, was used as the control group and labeled as G1. On the 5th day, the body length of the BSFL in the G2 group was significantly greater than that in G1 and G3 (p < 0.05). The dry matter weight loss rate in the G3 group was significantly lower compared to that of G1 and G2 (p < 0.05), and the feed conversion rate (FCR) of G1 was significantly lower than that of G2 and G3 (p < 0.01). In summary, adding maize stover and BSFL frass increased BSFL feed intake and improved body weight gain. However, these additives did not significantly enhance BSFL bioconversion efficiency. The organic matter in maize stover and BSFL frass was utilized by the BSFL, and the heavy metal levels in each group of BSFL did not exceed standard limits. Full article
(This article belongs to the Special Issue Insect Rearing: Reserve Forces with Commercial and Ecological Values)
17 pages, 1443 KiB  
Article
Multi-Stakeholder Networks as Governance Structures and ICT Tools to Boost Blue Biotechnology in Spain
by Jesus E. Argente-Garcia, Jaime Bernardeau-Esteller, Cristóbal Aguilera, Juan Luis Gómez Pinchetti, María Semitiel-García and Antonio F. Skarmeta Gómez
Sustainability 2025, 17(1), 155; https://doi.org/10.3390/su17010155 - 28 Dec 2024
Viewed by 610
Abstract
Blue Biotechnology (BBt) is a young and promising sector in the Mediterranean region with the potential to drive innovation and strengthen the Blue Economy (BE). However, its progress is constrained by fragmented coordination among stakeholders, impeding policy development and efficient resource management. Under [...] Read more.
Blue Biotechnology (BBt) is a young and promising sector in the Mediterranean region with the potential to drive innovation and strengthen the Blue Economy (BE). However, its progress is constrained by fragmented coordination among stakeholders, impeding policy development and efficient resource management. Under this context, this study investigates the role of networks of diverse stakeholders, particularly the Spanish Blue Biotechnology Hub (BBHub) and a digital tool, ICT Matchmaking Tool (which connects network actors), in addressing these challenges by fostering collaboration, enhancing governance and supporting sustainable innovation. Building on this, the research employed the quadruple helix model (administrations, academia and research, industry and society), engaging 214 individuals from 130 organizations in the BBHub network. A survey assessed participants’ involvement and influence perceptions, followed by the formation of a discussion group “called sherpa group” of 10 key stakeholders for in-depth discussions through semi-structured interviews and meetings. Through this approach, key barriers to BBt and potential solutions for BE sustainable growth in Spain were identified, including regulatory obstacles, limited funding or weak public-private collaboration. Among the solutions proposed were the simplification of administrative processes to create new business, the creation of specific funding opportunities or the implementation of labelling policies to promote BBt products and value chains. Considering these findings, the study demonstrates that the BBHub network and ICT Matchmaking Tool could enhance stakeholder coordination, governance and decision-making processes in Spain. By addressing these gaps, these tools enable collaboration and better coordination among actors, contributing to sustainable marine resource use and innovation in the BBt and BE sector. However, sustained progress requires stable funding and stronger stakeholder commitments. In turn, as a broader implication, this research provides a replicable model for leveraging open innovation and multi-stakeholder frameworks to promote coordination, policy development and sustainable growth in the BBt and BE sectors. Thus, it offers insights into addressing governance challenges in Spain and the Mediterranean, advancing the use of marine bioresources through collaborative approaches. Full article
(This article belongs to the Section Environmental Sustainability and Applications)
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<p>Scheme showing the main elements to improving the coordination and the governance of BBt and BE in Spain and the potential role of BBHub and the ICT Tool.</p>
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<p>Overview of the research showing the connection between the different phases of the work carried out and the results obtained in the BBHub network in Spain.</p>
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<p>Overview of the methodology, tools and workflow used in the research.</p>
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12 pages, 420 KiB  
Protocol
Unlocking Female Fertility with a Specific Reproductive Exercise Program: Protocol of a Randomized Controlled Clinical Trail
by Barbara Petra Kovács, Júlia Balog, Barbara Sebők, Márton Keszthelyi and Szabolcs Várbíró
Life 2025, 15(1), 18; https://doi.org/10.3390/life15010018 - 27 Dec 2024
Viewed by 436
Abstract
According to World Health Organization (WHO) data, 16% of people are affected by infertility across the globe. One underlying factor is the age-related decline of ovarian reserve (DOR), which can lead to a higher chance of infertility and has no widely accepted treatment [...] Read more.
According to World Health Organization (WHO) data, 16% of people are affected by infertility across the globe. One underlying factor is the age-related decline of ovarian reserve (DOR), which can lead to a higher chance of infertility and has no widely accepted treatment currently. Specific supplements and moderate exercise have been shown to improve fertility; however, there is no consensus to date on the type of exercise providing the best results. Our goal is to develop a novel exercise program combined with natural supplements for the improvement of fertility. We also propose a single-centered, randomized, open-label clinical trial using our newly developed exercise in the intervention group, compared to walking and no exercise in the other groups, to investigate the benefits of this exercise program in the future. In this study, we developed a structured, novel combination of exercises focusing on the pelvic and ovarian regions, core strengthening and improvement of blood circulation in this region. The 70 min full body “reproductive gymnastics”, includes strengthening, stretching, and relaxation exercises combined with yoga-inspired moves and diaphragmatic breathing with meditation elements to activate the parasympathetic pathway and stress relief. We believe we can improve fertility through the combination of natural supplements and our targeted, moderate physiotherapy program in women with DOR. Full article
(This article belongs to the Special Issue Obstetrics and Gynecology Medicine: Go From Bench to Bedside)
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<p>Trial design.</p>
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11 pages, 12986 KiB  
Article
Digitization of the Lichenotheca Veneta by Vittore Trevisan
by Stefano Martellos, Maria Zardini, Linda Seggi, Matteo Conti and Raffaella Trabucco
Heritage 2024, 7(12), 7298-7308; https://doi.org/10.3390/heritage7120337 - 21 Dec 2024
Viewed by 408
Abstract
The Lichenotheca Veneta, published in 1869 by Vittore Trevisan (1818–1897), is one of the most relevant historic collections of exsiccatae of lichens in Italy. It contains a total of 268 specimens from 74 genera, 197 species, and 119 varieties and forms, organized [...] Read more.
The Lichenotheca Veneta, published in 1869 by Vittore Trevisan (1818–1897), is one of the most relevant historic collections of exsiccatae of lichens in Italy. It contains a total of 268 specimens from 74 genera, 197 species, and 119 varieties and forms, organized into eight files and four volumes, and was probably conceived as the first of a series, even if no further volumes were published. To our knowledge, it is probably preserved in its complete and original form at the Natural History Museum of Venice only. Given its historical, cultural, and scientific relevance, it has been digitized and the resulting images and metadata have been published in a web portal. The digitization workflow comprised an initial digital imaging phase, followed by the extraction of specimens’ metadata from the specimens’ labels, and by a further digital imaging phase to capture specimens’ relevant details. The mobilization of metadata and images by means of digitization is widely recognized as an effective approach for enhancing the accessibility and usability of natural history collections. At the same time, since several inferences can be made without physically accessing the specimens, which, being biological objects, are intrinsically fragile, digitization contributes to reducing the risk of their deterioration. This contribution details the collection and its features, discussing the digitization process and its results. Full article
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Figure 1
<p>In each volume of the <span class="html-italic">Lichenotheca Veneta</span> specimens are normally glued to the sheets, and have a typewritten label detailing their scientific name, synonyms, habitat, and locality of collection. In this example, a specimen (UID: MSNVE-24866) of <span class="html-italic">Lobaria macrophylla</span> Trevis. is shown.</p>
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<p>Six sheets from the <span class="html-italic">Lichenotheca Veneta</span>, with specimens glued in different positions. Since specimens, collected with at least part of the original substratum, are at least slightly three-dimensional, they, as well as their labels, are fixed in different positions on the sheets. This allows for achieving a more or less even height of all the portions of each volume when several sheets are stacked together.</p>
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<p>A digital image of the label of <span class="html-italic">Arthonia dispersa</span> Nyl. The label, other than the scientific name, hosts the synonyms (according to Trevisan), the area of collection, notes from the author, the taxon’s differences with the closest related taxa, and the opinion of the author or of other scientists on its systematic position.</p>
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<p>The specimen page of <span class="html-italic">Lobaria macrophylla</span> Trevis. from the web portal. The scientific name and the transcription of the label (all verbatim, as they were originally written by Trevisan) are reported at the beginning of the page, and are followed by a gallery of panoramic and detail images.</p>
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13 pages, 4036 KiB  
Article
Wanted: Dead or Alive Cells with Propidium Iodide Staining in Liver Tissue
by Tim Christopher Krapoth, Gina Sophie Henle, Mihrije Avdyli, Berina Bektić, Katharina Maria Schwarzkopf, Larisa Bešić, Stefan Zeuzem, Christoph Welsch, Nico Kraus and Cristina Ortiz
Int. J. Mol. Sci. 2024, 25(24), 13521; https://doi.org/10.3390/ijms252413521 - 17 Dec 2024
Viewed by 499
Abstract
This study demonstrates the effectiveness of propidium iodide as a reliable marker for detecting dead or dying cells in frozen liver tissue sections. By comparing propidium iodide staining with the widely used Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay, both methods [...] Read more.
This study demonstrates the effectiveness of propidium iodide as a reliable marker for detecting dead or dying cells in frozen liver tissue sections. By comparing propidium iodide staining with the widely used Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay, both methods showed consistent results in disease models such as alcohol-induced fibrosis and Western diet-induced fatty liver. Additionally, propidium iodide was successfully co-stained with other fluorescent markers, like phalloidin (for actin filaments) and antibodies targeting collagen, enabling detailed spatial analysis of dying cells within tissue. This multiplex approach allows for a deeper understanding of tissue organization and cell death localization, particularly in complex conditions like liver fibrosis. Moreover, our results suggest that propidium iodide staining can be applied beyond current models, offering a more accessible and cost-effective alternative to traditional methods, like TUNEL. Furthermore, its integration with other markers enables simultaneous analysis of immune responses and tissue damage, making it a powerful tool for future studies on liver disease and other inflammatory conditions. This technique has the potential to advance research into disease mechanisms and improve the evaluation of novel therapeutic strategies targeting tissue regeneration and inflammation control. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Hepatotoxicity—2nd Edition)
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<p>Propidium iodide (PI) and DAPI showed nuclear co-localization. (<b>a</b>) Workflow of PI staining protocol. (<b>b</b>) Representative image taken at 60× magnification from liver mouse cryosections and stained with PI (red) and DAPI (blue) showing nuclear co-localization. Scale bar = 10 μm.</p>
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<p>Fluorescence PI staining in liver mouse cryosections is comparable to the TUNEL assay. (<b>a</b>,<b>d</b>) Representative images from immunohistochemical TUNEL assay staining in paraffin-embedded liver sections from healthy, ethanol- (EtOH), and EtOH + CCl<sub>4</sub>-treated mice (n = 9) and their respective quantification analysis of TUNEL-positive cells (%). (<b>b</b>,<b>e</b>) Fluorescence staining of PI (red) and DAPI (blue) in liver cryosections of healthy, EtOH-, and EtOH + CCl<sub>4</sub>-treated mice (n = 9) and their respective morphometric analysis (%). (<b>c</b>,<b>f</b>) Representative fluorescence images of PI (red) and DAPI (blue) staining in liver cryosections of healthy, western diet- (WD), and WD + CCl<sub>4</sub>-treated mice (n = 9) and their quantification of PI positive cells (%). All images were taken at 20× magnification, scale bar = 50 μm. Results are expressed as mean ± SEM; * <span class="html-italic">p</span> &lt; 0.05; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Fluorescence-labeled phalloidin co-stained with PI. (<b>a</b>) Representative fluorescence images from healthy liver mouse cryosections stained with PI (red), DAPI (blue), and phalloidin labeled with Alexa 488 (green). (<b>b</b>) Representative images from liver sections from mice treated with EtOH + CCl<sub>4</sub> stained with PI (red), DAPI (blue), and phalloidin-Alexa488 (green). Images were taken at 20× magnification, scale bar = 50 μm.</p>
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<p>Co-staining of PI with a fluorescence-labeled collagen antibody. Collagen antibody is conjugated to Alexa Fluor 488 (green) and was co-stained with PI (red) and DAPI (blue) in liver cryosections of mice treated with EtOH + CCl4. Collagen1a1 (Col1a1) stained the fibrotic tissue characteristic from these treated mice. Merge image and the augmentation showed the region in the liver tissue where the cells are positive for PI and Col1a1 (yellow). Images were taken at 20× magnification, scale bar = 500 μm.</p>
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<p>Tissue permeabilization increases PI-positive staining. (<b>a</b>,<b>b</b>) Liver cryosections from healthy and EtOH + CCl<sub>4</sub> mice, respectively, were permeabilized with 0.1% Triton x-100 and stained afterwards with PI (red) and DAPI (blue). The number of PI-positive cells after permeabilization significantly increased when compared to the untreated ones. Kidney cryosections from mice (healthy and EtOH + CCl<sub>4</sub>) were stained with PI and showed high number of PI-positive cells even in healthy group. Images were taken with 20× magnification, scale bar = 50 μm.</p>
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16 pages, 1019 KiB  
Article
Hybrid Process Flow Diagram for Separation of Fusel Oil into Valuable Components
by Alexey Missyurin, Diana-Luciana Cursaru, Mihaela Neagu and Marilena Nicolae
Processes 2024, 12(12), 2888; https://doi.org/10.3390/pr12122888 - 17 Dec 2024
Viewed by 442
Abstract
Ethanol production by fermentation results in obtaining, in addition to the main product, ethyl alcohol, by-products and secondary products, which include carbon dioxide, fusel oil, and ester–aldehyde cut. Fusel oil, despite its low yield and the large volume of ethanol production, accumulates at [...] Read more.
Ethanol production by fermentation results in obtaining, in addition to the main product, ethyl alcohol, by-products and secondary products, which include carbon dioxide, fusel oil, and ester–aldehyde cut. Fusel oil, despite its low yield and the large volume of ethanol production, accumulates at distilleries, which ultimately raises the question of its disposal or the rational use of this by-product. Fusel oil, being a complex mixture, can serve as a source of technical alcohols used in various sectors of the economy, including the food industry, pharmaceuticals, organic synthesis, perfume, and cosmetics industries, as well as the production of paints and varnishes. However, the complexity of using fusel oil lies in its difficult separation. The reason for this is the presence of water, which forms low-boiling azeotropes with aliphatic alcohols. Our study aimed to develop a process flow diagram (PFD) that allows individual components from fusel oil to be obtained without extraneous separating agents (not inherent in fusel oil). This condition is necessary to obtain products labeled as natural for further use in the food, perfume, cosmetic, and pharmaceutical industries. The distinctive feature of this work is that the target product is not only isoamyl alcohol but also all other alcohols present in the composition of fusel oil. To achieve this goal and create a mathematical model, the Aspen Plus V14 application, the Non-Random Two Liquid (NRTL) thermodynamic model, and the Vap-Liq/Liq-Liq phase equilibrium were used. Fusel oil separation was modeled using a continuous separation PFD to obtain ethanol, water, isoamyl alcohol, and raw propanol and butanol cuts. The Sorel and Barbet distillation technique was used to isolate ethanol. The isolation of isopropanol and 1-propanol, as well as isobutanol and 1-butanol, was modeled using the batch distillation method. The isolation of fusel oil components was based on their thermodynamic properties and the selection of appropriate techniques for their separation, such as extraction, distillation, pressure swing distillation, and decantation. The simulation of fusel oil separation PFD showed the possibility of obtaining the components of a complex mixture without separating agents, as discussed earlier. Ethanol corresponds to the quality of rectified ethyl alcohol, and 1-butanol and isoamyl alcohols to anhydrous alcohols, whereas isopropanol (which contains an admixture of ethanol), 1-propanol, and isobutanol are obtained as aqueous solutions of different concentrations of alcohols. However, due to a distillation boundary in the raw propanol and butanol cuts, these mixtures cannot be separated completely, which leads to the production of intermediate fractions. To eliminate intermediate fractions and obtain anhydrous isopropanol, 1-propanol, and isobutanol in the future, it is necessary to solve the dehydration problem of either fusel oil or the propanol–butanol mixture. Full article
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<p>Experimental fusel oil distillation curve according to ASTM D 86 [<a href="#B29-processes-12-02888" class="html-bibr">29</a>].</p>
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<p>Fusel oil separation—proposed PFD.</p>
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<p>Distillation synthesis ternary map (mass-based). (<b>a</b>) Raw propanol cut; (<b>b</b>) raw butanol cut.</p>
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14 pages, 567 KiB  
Article
Defining “High-In” Saturated Fat, Sugar, and Sodium to Help Inform Front-of-Pack Labeling Efforts for Packaged Foods and Beverages in the United States
by Elizabeth K. Dunford, Donna R. Miles, Bridget A. Hollingsworth, Samantha Heller, Barry M. Popkin, Shu Wen Ng and Lindsey Smith Taillie
Nutrients 2024, 16(24), 4345; https://doi.org/10.3390/nu16244345 - 17 Dec 2024
Cited by 1 | Viewed by 789
Abstract
Background: To help consumers make healthier choices, the US Food and Drug Administration (FDA) has been charged with developing a front-of-package label (FOPL) to appear on US packaged foods and beverages. One option being explored is the use of “high-in” FOPLs for [...] Read more.
Background: To help consumers make healthier choices, the US Food and Drug Administration (FDA) has been charged with developing a front-of-package label (FOPL) to appear on US packaged foods and beverages. One option being explored is the use of “high-in” FOPLs for added sugar, sodium, and saturated fat using a threshold of ≥20% of the recommended daily value (%DV) per portion/serving size to define “high-in”. While research has addressed what FOPL designs are most effective at visually communicating “high-in”, less attention has been paid to the nutrient profile model (NPM) used to decide which products should receive these labels. In addition, several established regional NPMs already exist that identify products that are high in nutrients of concern, but it is unclear how these compare to the FDA’s %DV approach. Methods: We used a dataset of 51,809 US products from Mintel’s Global New Products Database to examine how the FDA’s current definition of “high-in” compares to three established regional NPMs: the Canadian NPM, the Pan American Health Organization (PAHO) NPM, and Chile’s NPM. Results: Overall agreement between the four NPMs was 51% for foods and 72% for beverages, with highest agreement in categories such as sweetened sodas (87%), and lowest agreement in categories such as bread (14%) and salty snacks (29%). The Canadian NPM showed the highest agreement to the FDA “high-in” criteria while the Chilean and PAHO models had lower agreement. For many food categories, the FDA’s definition of “high-in” would require the fewest products to carry a “high-in” label. This issue was particularly pronounced in categories that tend to be served in small portions (e.g., salty snacks, bars), but disappeared or reversed for categories that are served in larger portions (e.g., frozen and non-frozen main dishes). Conclusions: The NPM chosen has important policy implications for an FOPL system’s ability to identify unhealthy foods and incentivize companies to reformulate products. Based on these results, the FDA should consider using a stronger NPM similar to those used elsewhere in the Americas region when deciding the final thresholds for “high-in” for US packaged foods and beverages. Full article
(This article belongs to the Section Carbohydrates)
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<p>Percent of US food products that would be considered ‘high in’ added sugar, saturated fat, and/or sodium among four nutrient profile models (NPMs) based on % Daily Value (DV), Chile, or the Pan American Health Organization (PAHO) using data from Mintel USA (2019–2023; <span class="html-italic">n</span> = 47,503 food products). “Any ‘high in’” refers to products that meet criteria for one or more nutrients (i.e., added sugar, saturated fat, sodium); “1 ‘high in’”, “2 ‘high in’”, or “3 ‘high in’” refers to the number of nutrients a product meets criteria for high in added sugar, saturated fat, and/or sodium.</p>
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<p>Percent of US beverage products that would be considered ‘high in’ added sugar, saturated fat, and/or sodium among four nutrient profile models (NPMs) based on % Daily Value (DV), Chile, or the Pan American Health Organization (PAHO) using data from Mintel USA (2019–2023; <span class="html-italic">n</span> = 4306 beverage products). “Any ‘high in’” refers to products that meet criteria for one or more nutrients (i.e., added sugar, saturated fat, sodium); “1 ‘high in’”, “2 ‘high in’”, or “3 ‘high in’” refers to the number of nutrients a product meets criteria for high in added sugar, saturated fat, and/or sodium.</p>
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19 pages, 6914 KiB  
Article
Interaction of Liposomes Containing the Carrageenan/Echinochrome Complex with Human HaCaT Keratinocytes In Vitro
by Ekaterina S. Menchinskaya, Vladimir I. Gorbach, Evgeny A. Pislyagin, Tatiana Y. Gorpenchenko, Evgeniya A. Pimenova, Irina V. Guzhova, Dmitry L. Aminin and Irina M. Yermak
Mar. Drugs 2024, 22(12), 561; https://doi.org/10.3390/md22120561 - 16 Dec 2024
Viewed by 648
Abstract
Liposomal drug delivery systems are successfully used in various fields of medicine for external and systemic applications. Marine organisms contain biologically active substances that have a unique structure and exhibit a wide range of biological activities. Polysaccharide of red seaweed (carrageenan (CRG)), and [...] Read more.
Liposomal drug delivery systems are successfully used in various fields of medicine for external and systemic applications. Marine organisms contain biologically active substances that have a unique structure and exhibit a wide range of biological activities. Polysaccharide of red seaweed (carrageenan (CRG)), and water-insoluble sea urchin pigment (echinochrome (Ech)) interact with each other and form a stable complex. We included the CRG/Ech complex in liposomes for better permeability into cells. In our research, tetramethylrhodamine isothiocyanate TRITC-labeled CRG was synthesized to study the interaction of the complex encapsulated in liposomes with human epidermal keratinocytes (HaCaTs) widely used to expose the skin to a variety of substances. Using confocal microscopy, we found that liposomes were able to penetrate HaCaT cells with maximum efficiency within 24 h, and pre-incubation of keratinocytes with liposomes resulted in the delivery of the CRG/Ech complex into the cytoplasm. We investigated the anti-inflammatory effects of liposomes, including the lysosomal regulation, increased intracellular ROS levels, and increased NO synthesis in lipopolysaccharide (LPS)- or Escherichia coli (E. coli)-induced inflamed skin cells. Liposomes containing the CRG/Ech complex significantly reduced lysosomal activity by 26% in LPS-treated keratinocytes and decreased ROS levels in cells by 23% after LPS exposure. It was found that liposomes with the complex improved the migration of HaCaT keratinocytes incubated with high-dose LPS by 47%. The results of the work, taking into account the good permeability of liposomes into keratinocytes, as well as the anti-inflammatory effect on cells treated with LPS or E. coli, show the prospects of using liposomes containing the CRG/Ech complex as an anti-inflammatory agent in the fight against skin infections. Full article
(This article belongs to the Special Issue Marine Polysaccharide-Based Biomaterials)
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<p>Scanning electron microscopy images of (<b>a</b>,<b>b</b>) conventional liposomes, (<b>c</b>,<b>d</b>) liposomes containing the CRG/Ech complex. Scale bars: 1 µm (<b>a</b>,<b>c</b>); 200 nm (<b>b</b>,<b>d</b>), EHT = 5.00 kV.</p>
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<p>Localization of liposomes containing CRG-TRITC during incubation with HaCaT cells for 0 h, 4 h, and 24 h (appearance of HaCaT cells (B/W), blue color, 1-ANS (emission: 440–510); red color, TRITC (emission: 566–692); combined image; ×40). Scale bar = 50 μM.</p>
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<p>The fluorescence intensity value of liposomes containing CRG-TRITC after incubation with HaCaT cells (<b>a</b>). Colocalization analysis using the Pearson coefficient (between 1-ANS and TRITC) (<b>b</b>). Data are presented as mean ± SEM (<span class="html-italic">n</span> = 3). * <span class="html-italic">p</span> indicates a significant difference with <span class="html-italic">p</span> ≤ 0.05 compared to cells incubated with liposomes for 0 h.</p>
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<p>Fluorescent image of human HaCaT keratinocytes after incubation with liposomes containing the CRG-TRITC/Ech complex (100 μg/mL) for 4 and 24 h. Images were obtained by superimposing fluorescent channels. The fluorescence of liposomes with CRG/Ech is shown in red (TRITC), and cell nuclei are shown in blue (Hoechst 33342). Scale bar = 50 μM.</p>
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<p>Effect of liposomes with CRG or CRG/Ech on HaCaT cell viability as measured by the MTT assay. HaCaT cells were treated with liposomes with CRG or CRG/Ech at concentrations of 1.56–500 μg/mL for 24 h.</p>
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<p>Lysosomal activity of liposomes containing the CRG/Ech complex or CRG pre-incubated with human keratinocytes (HaCaT cells) for 1 h. Cells (1 × 10<sup>4</sup> cells/well) were incubated with LPS at 1.0 μg/mL (<b>a</b>) or <span class="html-italic">E. coli</span> 1 × 10<sup>2</sup> CFU (<b>b</b>) for 24 h. The data are presented as the mean ± SEM values (<span class="html-italic">n</span> = 3); * <span class="html-italic">p</span> ≤ 0.05 indicates significant differences compared to cells exposed to LPS or <span class="html-italic">E. coli</span> alone; ns indicates that differences are not significant.</p>
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<p>The effects of liposomes containing the CRG/Ech complex or CRG on the levels of ROS and NO production in HaCaT cells. Cells (1 × 10<sup>4</sup> cells/well) were incubated with LPS at 1.0 μg/mL (<b>a</b>,<b>c</b>) or <span class="html-italic">E. coli</span> 1 × 10<sup>2</sup> CFU (<b>b</b>,<b>d</b>) for 24 h. Intracellular ROS and NO levels were measured with H<sub>2</sub>DCF-DA and DAF-FM fluorescent probes, correspondingly, using spectrofluorimetry. Data are presented as mean ± SEM (<span class="html-italic">n</span> = 3). * <span class="html-italic">p</span> ≤ 0.05 indicates significant differences compared to cells exposed to LPS or <span class="html-italic">E. coli</span> alone; ns indicates that differences are not significant.</p>
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<p>The effect of liposomes with the CRG/Ech complex on the migration of LPS-treated HaCaT cells (<b>a</b>). Migration of HaCaT cells into wound areas observed with a fluorescent microscope and processed by Image J 1.53t (<b>b</b>). Data are presented as means ± SEM (<span class="html-italic">n</span> = 3). * <span class="html-italic">p</span> ≤ 0.05 indicates significant differences compared to cells exposed to LPS alone. Scale bar = 500 μM.</p>
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26 pages, 4592 KiB  
Article
Identification of Small RNAs in Streptomyces clavuligerus Using High-Resolution Transcriptomics and Expression Profiling During Clavulanic Acid Production
by Carlos Caicedo-Montoya, Luisa F. Patiño and Rigoberto Ríos-Estepa
Int. J. Mol. Sci. 2024, 25(24), 13472; https://doi.org/10.3390/ijms252413472 - 16 Dec 2024
Viewed by 552
Abstract
Small non-coding RNAs play a pivotal role in regulating various metabolic processes in both prokaryotic and eukaryotic organisms. However, knowledge about small RNAs (sRNAs) in Streptomyces clavuligerus (S. clavuligerus) is scarce. This study aimed to use cutting-edge bioinformatics tools and a [...] Read more.
Small non-coding RNAs play a pivotal role in regulating various metabolic processes in both prokaryotic and eukaryotic organisms. However, knowledge about small RNAs (sRNAs) in Streptomyces clavuligerus (S. clavuligerus) is scarce. This study aimed to use cutting-edge bioinformatics tools and a compendium of RNA-seq data to predict the potential coding of sRNAs that might be present in the genome of S. clavuligerus ATCC 27064. In the genome of S. clavuligerus, 606 intergenic regions (IGRs) are conserved, and 272 possess a highly thermodynamically stable and conserved secondary structure, indicating the presence of non-coding RNA in these regions. The transcriptome assembly of S. clavuligerus showed that the genome is completely functional, as all the annotated genes are expressed under the conditions analyzed. From this assembly, transcripts originating from IGRs were labeled as putative sRNAs, and their differential expression during the growth curve of S. clavuligerus for clavulanic acid (CA) production was established. The interactome of these differentially expressed (DE) RNAs displayed the sRNAs as global regulators, as they can have multiple mRNA targets. The functional annotation of the target genes of DE sRNAs demonstrated that they are directly involved in secondary metabolite production. Specifically, two sRNA have the genes of the biosynthetic gene cluster of CA as targets. Thus, these molecules add an additional layer to the regulatory cascade for CA biosynthesis, and we propose them as targets for metabolic engineering to increase CA production. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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<p>An overview of the workflow employed for the determination of sRNAs in <span class="html-italic">S. clavuligerus</span> and their putative role in CA production.</p>
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<p>(<b>A</b>) The conservation of intergenic regions across the group of <span class="html-italic">Streptomyces</span> species considered in this study (<a href="#app1-ijms-25-13472" class="html-app">Supplementary Table S1</a>). The number of clusters represents the amount of IGR families or groups of IGRs detected. The number of genomes is the number of times an IGR appears in the studied genomes. (<b>B</b>) The classification of IGRs according to their neighboring genes for the conserved IGRs in <span class="html-italic">S. clavuligerus.</span> (<b>C</b>) Motif found from promoters detected in conserved IGRs.</p>
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<p>A Venn diagram showing the different features detected in the conserved IGRs. “<b>RNAz</b>” indicates an RNA class probability greater than 0.5, suggesting a conserved secondary structure. “<b>Promoter/Terminator</b>” designates a promoter or terminator sequence as determined by Promotech or TranstermHP within the IGR, respectively. “<b>Infernal</b>” shows the number of known sRNAs annotated in RFAM. The description below the Venn diagram compares the bioinformatics predictions in the conserved IGRs with all IGRs in the genome of <span class="html-italic">S. clavuligerus.</span> * RNAz predictions do not differ when considering all IGRs against conserved IGRs because to be detected by RNAz, IGRs must be conserved.</p>
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<p>The cumulative distribution of the fraction of transcripts expressed in a given number of RNA-seq samples for all annotated genes. This includes CDS; tRNAs and rRNAs, in addition to non-coding transcripts represented by antisense transcripts; and novel transcripts.</p>
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<p>The frequency of expressed transcripts, determined by TPM, in each number of RNA-seq samples for all annotated genes and discriminated by CDS; tRNA and rRNAs, in addition to non-coding transcripts represented by antisense transcripts; and novel transcripts.</p>
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<p>Operons detection by Rockhopper. (<b>A</b>) The Treemap showing the number of genes classified as single genes or gene pairs if multi-gene operons in the chromosome or in the plasmid PCLA1. (<b>B</b>) The distribution of operon size in the genome of <span class="html-italic">S. clavuligerus</span> discriminated by their presence in the chromosome or in the plasmid PCLA1; the <span class="html-italic">x</span>-axis represents the number of genes per operon.</p>
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<p>The operon structure of the BGC for cephamycin C. Sites where predicted sRNAs arise are represented by black arrows; Parenthesis: length and strand. Genes are represented as horizontal thick arrows. TU are depicted as genes bound together by a light blue arrow. Green: transcriptional regulator; pale red: biosynthetic genes; grey: other genes; blue: transport-related genes; vertical green line: binding site.</p>
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<p>The volcano plot for DE sRNAs during the production of CA at different time points for (<b>A</b>) the chromosome and (<b>B</b>) the plasmid PCLA1 of <span class="html-italic">S. clavuligerus</span>. DE sRNAs have a log2FC &gt;= 2 and an FDR &lt; 0.01. Blue: upregulated sRNAs; red: downregulated sRNAs.</p>
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<p>Cluster of Orthologous Groups (COG) functional classification for gene products from mRNAs potentially interacting with the differentially expressed (DE) sRNAs at 96 h.</p>
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<p>The read alignment of the sRNA “p_RNA_R_6021554-6021232-” to the genome of <span class="html-italic">S. clavuligerus</span> at different time points considered in this study. The “p” stands for predicted; “R” indicates the prediction comes from Rockhopper. In the sRNA name, “6021554-6021232” are the genomic coordinates, and “-” at the end denotes the strand. The alignments were visualized in SeqMonk. Blue and red represent the reverse and forward strands, respectively.</p>
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16 pages, 3231 KiB  
Article
Monovalent and Divalent Designs of Copper Radiotheranostics Targeting Fibroblast Activation Protein in Cancer
by Pawan Thapa, Sashi Debnath, Anjan Bedi, Madhuri Parashar, Paulina Gonzalez, Joshua Reus, Hans Hammers and Xiankai Sun
Cancers 2024, 16(24), 4180; https://doi.org/10.3390/cancers16244180 - 15 Dec 2024
Viewed by 622
Abstract
Background: Fibroblast activation protein (FAP)-targeted theranostic radiopharmaceuticals have shown desired tumor-to-background organ selectivity due to the ubiquitous presence of FAP within the tumor microenvironment. However, suboptimal tumor retention and fast clearance have hindered their use to deliver effective cancer therapies. With well-documented [...] Read more.
Background: Fibroblast activation protein (FAP)-targeted theranostic radiopharmaceuticals have shown desired tumor-to-background organ selectivity due to the ubiquitous presence of FAP within the tumor microenvironment. However, suboptimal tumor retention and fast clearance have hindered their use to deliver effective cancer therapies. With well-documented FAP-targeting moieties and linkers appending them to optimal chelators, the development of copper radiopharmaceuticals has attracted considerable interest, given the fact that an ideal theranostic pair of copper radionuclides (64Cu: t1/2 = 12.7 h; 17.4% β+; Eβ+max = 653 keV and 67Cu: t1/2 = 2.58 d; 100% β; Eβmax = 562 keV) are available. Herein, we report our design, synthesis, and comparative evaluation of monovalent and divalent FAP-targeted theranostic conjugates constructed from our previously reported bifunctional chelator scaffold (BFS) based on 1,4,8,11-tetraaza-bicyclo [6.6.2]hexadecane-4,11-diacetic acid (CB-TE2A), which forms the most stable complex with Cu(II). Methods: After synthesis and characterization, the monovalent and divalent conjugates were radiolabeled with 64Cu for in vitro cell assays, followed by in vivo positron emission tomography (PET) imaging evaluation in relevant mouse models. Results: Both 64Cu-labeled conjugates showed high in vitro stability and anticipated FAP-mediated cell binding and internalization. The divalent one showed significantly higher FAP-specific tumor uptake than its monovalent counterpart. Conclusions: Our results demonstrate that the BFS-based multivalent approach can be practically used to generate FAP-targeted radiotheranostic agents for effective cancer diagnosis and treatment. Full article
(This article belongs to the Section Cancer Drug Development)
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<p>(<b>A</b>) UAMC1110, lead structure for FAPI development; (<b>B</b>) multivalent conjugate design for FAP-targeted copper radiotheranostics.</p>
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<p>Cell-based FAP-binding affinity and internalization assays of [<sup>64</sup>Cu]Cu-CB-TE2A-FAPI-04 (upper panel) and [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub> (lower panel). (<b>A</b>,<b>D</b>): FAP-specific binding assay using UAMC1110 as blockade; (<b>B</b>,<b>E</b>): Calculated ratios of total uptake vs. nonspecific uptake; (<b>C</b>,<b>F</b>): time-dependent internalization. Cell lines: RENCA-FAP (FAP<sup>+</sup>) and RENCA (FAP<sup>−</sup>).</p>
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<p>(<b>A</b>): Representative PET/CT images of [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub> in mice bearing RENCA-FAP (FAP<sup>+</sup>) tumors (yellow arrows indicate the tumors) at different time points. (<b>B</b>): Biodistribution of [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub> by quantitative imaging data analysis in the mice. Data presented as average %ID/g ± standard deviation (s.d.) (n = 3). (<b>C</b>): Tumor/muscle ratio at different time points. (<b>D</b>–<b>F</b>): Immunofluorescence staining assays of excised RENCA-FAP tumor tissues post imaging. The nuclei were stained with DAPI (<b>D</b>) and tumor cells with anti-FAP antibody (<b>E</b>). (<b>F</b>): Overlay of the FAP and DAPI staining.</p>
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<p>(<b>A</b>): Representative PET/CT images of XP-185 tumorgrafts in SCID/NOD mice (n = 4) with divalent [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub>. (<b>B</b>): Images obtained with co-injection of UAMC1110 with divalent [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub>. (<b>C</b>): Representative PET/CT images of XP-185 tumorgrafts in SCID/NOD mice (n = 4) with monovalent [<sup>64</sup>Cu]Cu-CB-TE2A-FAPI-04. Tumors are indicated with yellow arrows.</p>
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<p>Quantitative analysis of PET signals in tissues of interest in SCID/NOD mice bearing XP-185 tumorgrafts (n = 4). (<b>A</b>): [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub>. (<b>B</b>): [<sup>64</sup>Cu]Cu-CB-TE2A-(FAPI-04)<sub>2</sub> co-injected with UAMC1110 (tumor blocked vs. tumor unblocked at 4 h p.i., <span class="html-italic">p</span> = 0.0093.). (<b>C</b>): [<sup>64</sup>Cu]Cu-CB-TE2A-FAPI-04. Tumors are indicated with orange dotted boxes.</p>
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<p>Synthetic route to monovalent and divalent FAPI-04 conjugates. Reagents and reaction condition for monovalent conjugate: FAPI-04 (1.2 equiv.), CB-TE2A(<span class="html-italic"><sup>t</sup></span>Bu)<sub>2</sub>-COOH (1 equiv.), HBTU (1 equiv.), DIPEA (5 equiv.), 24 h; TFA, 6 h. Reagents and reaction condition for divalent conjugate: FAPI-04 (3.5 equiv.), CB-TE2A(<span class="html-italic"><sup>t</sup></span>Bu)<sub>2</sub>-(COOH)<sub>2</sub> (1 equiv.), HBTU (2 equiv.), DIPEA (10 equiv.), 24 h; TFA, 3 h.</p>
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12 pages, 1677 KiB  
Review
Microfluidic Technology for Measuring Mechanical Properties of Single Cells and Its Application
by Yixin Yin and Ziyuan Liu
Bioengineering 2024, 11(12), 1266; https://doi.org/10.3390/bioengineering11121266 - 13 Dec 2024
Viewed by 679
Abstract
Cellular mechanical properties are critical for tissue and organ homeostasis, which are associated with many diseases and are very promising non-labeled biomarkers. Over the past two decades, many research tools based on microfluidic methods have been developed to measure the biophysical properties of [...] Read more.
Cellular mechanical properties are critical for tissue and organ homeostasis, which are associated with many diseases and are very promising non-labeled biomarkers. Over the past two decades, many research tools based on microfluidic methods have been developed to measure the biophysical properties of single cells; however, it has still not been possible to develop a technique that allows for high-throughput, easy-to-operate and precise measurements of single-cell biophysical properties. In this paper, we review the emerging technologies implemented based on microfluidic approaches for characterizing the mechanical properties of single cells and discuss the methodological principles, advantages, limitations, and applications of various technologies. Full article
(This article belongs to the Section Biomechanics and Sports Medicine)
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<p>Classification of microfluidic techniques for mechanical characterization of single cells.</p>
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<p>Schematic diagram of EFC.</p>
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<p>Schematic diagram of the hydrodynamic stretching-induced deformation.</p>
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<p>Schematic diagram of micropipette.</p>
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<p>Schematic diagram of constriction channel.</p>
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<p>Schematic diagram of optical stretching.</p>
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<p>Schematic diagram of the acoustic wave-induced deformation.</p>
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