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24 pages, 9722 KiB  
Article
Automation Applied to the Collection and Generation of Scientific Literature
by Nadia Paola Valadez-de la Paz, Jose Antonio Vazquez-Lopez, Aidee Hernandez-Lopez, Jaime Francisco Aviles-Viñas, Jose Luis Navarro-Gonzalez, Alfredo Valentin Reyes-Acosta and Ismael Lopez-Juarez
Publications 2025, 13(1), 11; https://doi.org/10.3390/publications13010011 (registering DOI) - 6 Mar 2025
Abstract
Preliminary activities of searching and selecting relevant articles are crucial in scientific research to determine the state of the art (SOTA) and enhance overall outcomes. While there are automatic tools for keyword extraction, these algorithms are often computationally expensive, storage-intensive, and reliant on [...] Read more.
Preliminary activities of searching and selecting relevant articles are crucial in scientific research to determine the state of the art (SOTA) and enhance overall outcomes. While there are automatic tools for keyword extraction, these algorithms are often computationally expensive, storage-intensive, and reliant on institutional subscriptions for metadata retrieval. Most importantly, they still require manual selection of literature. This paper introduces a framework that automates keyword searching in article abstracts to help select relevant literature for the SOTA by identifying key terms matching that we, hereafter, call source words. A case study in the food and beverage industry is provided to demonstrate the algorithm’s application. In the study, five relevant knowledge areas were defined to guide literature selection. The database from scientific repositories was categorized using six classification rules based on impact factor (IF), Open Access (OA) status, and JCR journal ranking. This classification revealed the knowledge area with the highest presence and highlighted the effectiveness of the selection rules in identifying articles for the SOTA. The approach included a panel of experts who confirmed the algorithm’s effectiveness in identifying source words in high-quality articles. The algorithm’s performance was evaluated using the F1 Score, which reached 0.83 after filtering out non-relevant articles. This result validates the algorithm’s ability to extract significant source words and demonstrates its usefulness in building the SOTA by focusing on the most scientifically impactful articles. Full article
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<p>Process for enhancing entity recognition and relationship extraction in language models. Source: <a href="#B23-publications-13-00011" class="html-bibr">Panayi et al.</a> (<a href="#B23-publications-13-00011" class="html-bibr">2023</a>).</p>
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<p>Patent research to identify related documents at various stages of their life cycles. Source: <a href="#B2-publications-13-00011" class="html-bibr">Ali et al.</a> (<a href="#B2-publications-13-00011" class="html-bibr">2024</a>).</p>
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<p>Proposed framework (created by the authors).</p>
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<p>Behavior of the article population applying the classification rules.</p>
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<p>Diagram of relationships between the areas of knowledge of the topic to be investigated.</p>
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<p>Mamdani’s inference rules for determining the degree of interest of each article.</p>
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<p>Analysis of the literature by areas of knowledge and classification rules.</p>
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<p>Descriptive analysis of the repetitiveness of the <span class="html-italic">source words</span> in each article in R1 (R1-1).</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each article in R1 (R1-2).</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each article in R1 (R1-3).</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each article in R1 (R1-4).</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each article in R1 (R1-5).</p>
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<p>Descriptive analysis of the repetitiveness of the <span class="html-italic">source words</span> in each article in R3.</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each article in R4 (first set).</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each R4 article (second set).</p>
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<p>Descriptive analysis of the repetitiveness of <span class="html-italic">source words</span> in each article of R4 (third set).</p>
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<p>Descriptive analysis of the repetitiveness of the <span class="html-italic">source words</span> in each article of R5.</p>
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<p>Descriptive analysis of the repetitiveness of the <span class="html-italic">source words</span> in each article of R6 (first set).</p>
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<p>Descriptive analysis of the repetitiveness of the <span class="html-italic">source words</span> in each R6 article (second set).</p>
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12 pages, 231 KiB  
Article
Midwives’ Knowledge, Attitudes, and Professional Practices Regarding Prenatal Physical Activity
by Émilie Brunet-Pagé, Marie-Claude Rivard and Stephanie-May Ruchat
Healthcare 2025, 13(5), 576; https://doi.org/10.3390/healthcare13050576 (registering DOI) - 6 Mar 2025
Viewed by 21
Abstract
Background/Objectives: Prenatal physical activity (PA) offers numerous health benefits for both the mother and her child, yet few pregnant women are sufficiently active enough to obtain these benefits. Midwives play an important role in promoting prenatal PA. However, little is known about the [...] Read more.
Background/Objectives: Prenatal physical activity (PA) offers numerous health benefits for both the mother and her child, yet few pregnant women are sufficiently active enough to obtain these benefits. Midwives play an important role in promoting prenatal PA. However, little is known about the content of the information they share with their clients regarding prenatal PA, how they communicate it, and the personal factors that might influence their counseling. In the context of prenatal PA guidance, the aim of this study was to describe the knowledge, attitudes, professional practices, and communication methods used by midwives. Methods: A cross-sectional descriptive study was conducted between February and June 2024 among midwives working in the Province of Quebec. An electronic questionnaire including both closed (quantitative data) and open-ended (qualitative data) questions was developed. Results: Fifty midwives were included in the analysis. Only 28 (56%) reported being aware of the latest Canadian guidelines for PA throughout pregnancy. The recommendations provided varied in terms of content and accuracy but were often conservative (i.e., not focused on increasing PA). Forty-five (90%) mentioned providing information on PA to their pregnant client, and eighty-four (84%) said they used bidirectional communication to share this information. The vast majority (84%) did not consider their counseling to be optimal, primarily due to a lack of training and knowledge. Conclusions: Our finding allowed us to gain a better understanding of current midwifery knowledge, attitudes, and professional practices regarding prenatal PA and to initiate a reflection on how to improve their knowledge, skills, and confidence in guiding their client toward prenatal PA. Full article
36 pages, 21621 KiB  
Article
CityBuildAR: Enhancing Community Engagement in Placemaking Through Mobile Augmented Reality
by Daneesha Ranasinghe, Nayomi Kankanamge, Chathura De Silva, Nuwani Kangana, Rifat Mahamood and Tan Yigitcanlar
Future Internet 2025, 17(3), 115; https://doi.org/10.3390/fi17030115 - 6 Mar 2025
Viewed by 91
Abstract
Mostly, public places are planned and designed by professionals rather engaging the community in the design process. Even if the community engaged, the engagement process was limited to hand drawings, manual mappings, or public discussions, which limited the general public to visualize and [...] Read more.
Mostly, public places are planned and designed by professionals rather engaging the community in the design process. Even if the community engaged, the engagement process was limited to hand drawings, manual mappings, or public discussions, which limited the general public to visualize and well-communicate their aspirations with the professionals. Against this backdrop, this study intends to develop a mobile application called “CityBuildAR”, which uses Augmented Reality technology that allows the end user to visualize their public spaces in a way they want. CityBuildAR was developed by the authors using the Unity Real-Time Development Platform, and the app was developed for an Android Operating System. The app was used to assess community interests in designing open spaces by categorizing participants into three groups: those with limited, average, and professional knowledge of space design. The open cafeteria of the University of Moratuwa, Sri Lanka served as the testbed for this study. The study findings revealed that: (a) Mobile Augmented Reality is an effective way to engage people with limited knowledge in space design to express their design thinking, (b) Compared to professionals, the general public wanted to have more green elements in the public space; (c) Compared to the professionals, the general public who were not conversant with the designing skills found the app more useful to express their ideas. The study guides urban authorities in their placemaking efforts by introducing a novel approach to effectively capture community ideas for creating inclusive public spaces. Full article
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<p>Methodology flowchart.</p>
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<p>Used placemaking elements in the application.</p>
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<p>Unity 3D interface.</p>
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<p>Sequence diagram.</p>
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<p>Prototype development.</p>
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<p>Invitation through Facebook.</p>
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<p>Case study area.</p>
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<p>Designing using: (<b>a</b>) Sketchup Modelling and (<b>b</b>) Hand-sketching.</p>
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<p>Users engaging in placemaking using the CityBuildAR app.</p>
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<p>Participants’ Profile.</p>
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<p>Positive aspects of using hand sketching for placemaking—university students.</p>
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<p>Challenges of using hand sketching for placemaking—university students.</p>
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<p>Positive aspects of using 3D modelling—university students.</p>
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<p>Challenges of using 3D modelling—university students.</p>
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<p>Challenges of using hand sketching for placemaking—general public.</p>
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<p>Challenges of using existing tools for placemaking—professionals.</p>
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<p>Positive aspects of using AR—university students.</p>
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<p>Challenges of using AR—university students.</p>
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<p>Positive aspects of using AR—general public.</p>
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<p>Motivations for using AR—professionals.</p>
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<p>Exemplary visualizations completed using CityBuildAR by Professionals (<b>a</b>) Design 1; (<b>b</b>) Design 2; and (<b>c</b>) Design 3.</p>
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<p>Exemplary visualizations completed using CityBuildAR by Undergraduate (<b>a</b>) Design 1; (<b>b</b>) Design 2; and (<b>c</b>) Design 3.</p>
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<p>Exemplary visualizations completed using CityBuildAR by General Public (<b>a</b>) Design 1; (<b>b</b>) Design 2; and (<b>c</b>) Design 3.</p>
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<p>Word Cloud representing participant opinions.</p>
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30 pages, 769 KiB  
Article
Is Cultured Meat a Case of Food or Technological Neophobia? On the Usefulness of Studying Social Representations of Novel Foods
by Roberto Fasanelli, Ernesto Casella, Sofia Foglia, Sonia Coppola, Assunta Luongo, Giuliana Amalfi and Alfonso Piscitelli
Appl. Sci. 2025, 15(5), 2795; https://doi.org/10.3390/app15052795 - 5 Mar 2025
Viewed by 211
Abstract
In recent years, many studies have examined “novel foods” from various perspectives; however, the theoretical framework of social representations has been underutilized in this research. This paper denotes an initial attempt to study the socio-symbolic impact of synthetic foods using this framework. Specifically, [...] Read more.
In recent years, many studies have examined “novel foods” from various perspectives; however, the theoretical framework of social representations has been underutilized in this research. This paper denotes an initial attempt to study the socio-symbolic impact of synthetic foods using this framework. Specifically, the study aims to explore how different audiences—such as carnivores versus vegetarians—interpret unfamiliar foods, focusing on a new food technology: synthetic meat. The research seeks to describe and compare the social representations of cultured meat that are co-constructed and shared among these social groups (n = 350). The study adopts the structural approach, analyzing both the structure and content of the social representations in question. This was achieved through a mixed-methods strategy, which included hierarchical evocation, a food neophobia scale, checklists, open-ended questions, and a projective sensory analysis technique. Data analysis employed both qualitative and quantitative methods. The main findings indicate the significant roles of generative processes, cognitive polyphasia, and sensory anchors in the co-construction of social representations of cultured meat. The use of chemical-genetic objectification, metaphors, and clichés reflects ongoing debates about the possible implications of synthetic meat consumption for the environment and society. Our findings encourage consideration of social knowledge and cultural variables in food studies. Full article
(This article belongs to the Special Issue Sensory Evaluation and Flavor Analysis in Food Science)
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<p>IRaMuTeQ output: Omni Similitude Analysis.</p>
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<p>IRaMuTeQ output: Veg Similitude Analysis.</p>
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19 pages, 5278 KiB  
Article
Dynamic Response Characteristics of Drivers’ Visual Search Behavior to Road Horizontal Curve Radius: Latest Simulation Experimental Results
by Jinliang Xu, Yongji Ma, Chao Gao, Tian Xin, Houfu Yang, Wenyu Peng and Zhiyuan Wan
Sustainability 2025, 17(5), 2197; https://doi.org/10.3390/su17052197 - 3 Mar 2025
Viewed by 242
Abstract
Road horizontal curves, which significantly influence drivers’ visual search behavior and are closely linked to traffic safety, also constitute a crucial factor in sustainable road traffic development. This paper uses simulation driving experiments to explore the dynamic response characteristics of 27 typical subject [...] Read more.
Road horizontal curves, which significantly influence drivers’ visual search behavior and are closely linked to traffic safety, also constitute a crucial factor in sustainable road traffic development. This paper uses simulation driving experiments to explore the dynamic response characteristics of 27 typical subject drivers’ visual search behavior regarding road horizontal curve radius. Results show that in a monotonous, open road environment, the driver’s visual search is biased towards the inside of the curve; as the radius increases, the 85th percentile value of the longitudinal visual search length gradually increases, the 85th percentile value of the horizontal search angle gradually decreases, the 85th percentile value of vehicle speed gradually increases, and the dispersion and bias of the gaze points gradually decrease. The search length, horizontal angle, and speed approach the level of straight road sections (380 m, 10° and 115 km/h, respectively). When R ≥ 1200 m, a driver’s dynamic visual search range reaches a stable distribution state that is the same as that of a straight road. A dynamic visual search range distribution model for drivers on straight and horizontal curved road sections is constructed. Based on psychological knowledge such as attention resource theory and eye–mind theory, a human factor engineering explanation was provided for drivers’ attention distribution and speed selection mechanism on road horizontal curve sections. The research results can provide theoretical references for the optimization design of road traffic, decision support to improve the driver training system, and a theoretical basis for determining the visual search characteristics of human drivers in autonomous driving technology, thereby promoting the safe and sustainable development of road traffic. Full article
(This article belongs to the Section Sustainable Transportation)
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<p>Road simulation model. (<b>a</b>) Straight road section. (<b>b</b>) Large-radius horizontal curve road section (R = 1500 m). (<b>c</b>) Small-radius horizontal curve road section (R = 200 m). (<b>d</b>) Adaptive practice model.</p>
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<p>Six-degree-of-freedom virtual simulation experiment platform for vehicle performance.</p>
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<p>Illustration of the eye tracker hardware.</p>
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<p>Visual search length and search angle of drivers on straight road sections.</p>
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<p>Visual search length and search angle of drivers on road horizontal curve sections (the fixation point is within the pavement range).</p>
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<p>Visual search length and search angle of drivers on road horizontal curve sections (the fixation point is outside the pavement range).</p>
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<p>Three-dimensional vector coordinate system for tracking drivers’ binocular gaze.</p>
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<p>Box plot of drivers’ driving speed on horizontal curve sections with different radii.</p>
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<p>Box plot of drivers’ visual search length on horizontal curve sections with different radii.</p>
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<p>Percentage change diagram of the difference in drivers’ visual search length on horizontal curve sections with different radii.</p>
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<p>Statistical chart of drivers’ horizontal search angle and speed on the horizontal curve sections with different radii.</p>
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<p>Statistics of drivers’ horizontal search gaze points in different intervals on horizontal curve sections with different radii.</p>
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<p>Dynamic visual search range of drivers on straight road sections.</p>
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<p>Dynamic visual search range on road horizontal curve sections.</p>
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<p>Schematic diagram of the influence of horizontal curve radius on the driver’s visual search range.</p>
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15 pages, 5497 KiB  
Article
Effectiveness of Mobile-Based Learning for Nasogastric Tube Intubation Among Medical Students: A Randomized Controlled Trial
by Ming-Hsuan Wu, Chen-Ju Chen and Huan-Fang Lee
Healthcare 2025, 13(5), 546; https://doi.org/10.3390/healthcare13050546 - 3 Mar 2025
Viewed by 220
Abstract
Background: Nasogastric tube (NGT) intubation is a critical skill, but it comes with the blind nature of the procedure and its high failure rates. Resources restrict access to traditional training methods, such as simulations based on manikins. We developed a mobile-based application, [...] Read more.
Background: Nasogastric tube (NGT) intubation is a critical skill, but it comes with the blind nature of the procedure and its high failure rates. Resources restrict access to traditional training methods, such as simulations based on manikins. We developed a mobile-based application, the Mobile-based Hands-on Learning System for Nasogastric Tube Intubation (MoHoNGT), to enhance undergraduate medical students’ training in this essential procedure. Methods: This open-label, randomized controlled trial was conducted in a medical center between August and October 2020, with medical students expected to enter their clerkships. The MoHoNGT and control group were exposed to the traditional training course and a self-learning period. The MoHoNGT group received additional access to MoHoNGT. Training effectiveness was evaluated by measuring knowledge, self-confidence, and performance on an objective structured clinical examination (OSCE). Statistical analyses included descriptive statistics, chi-square tests, and t-tests. Results: Seventy-three medical students were recruited. Thirty-two were allocated to the MoHoNGT group. No between-group differences were observed regarding demographic data. Post-intervention results indicated that the MoHoNGT group revealed more pronounced improvements in both NGT intubation knowledge (38.75 vs. 21.46, p < 0.001) and the confidence scale (8.50 vs. 5.17, p = 0.04). Post-study scores for NGT intubation knowledge were also higher in the MoHoNGT group (69.06 vs. 49.02, p < 0.001). Additionally, participants in the MoHoNGT group demonstrated superior performance on the OSCE (98.81 vs. 91.18, p = 0.003). Conclusions: Employing MoHoNGT with traditional training methods significantly enhanced the knowledge, self-confidence, and skills in NGT intubation among undergraduate medical students. This approach addresses various limitations of conventional techniques, suggesting that mobile-based learning could be a potential strategy for medical education. Full article
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<p>Consolidated Standards of Reporting Trials (CONSORT) flow diagram of participants. The flow diagram illustrates the study procedure. NGT: nasogastric tube; MoHoNGT: Mobile-based Hands-on Learning System for Nasogastric Tube Intubation; OSCE: objective structured clinical examination.</p>
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<p>Screenshots showcasing key features of the Mobile-based Hands-on Learning System for Nasogastric Tube Intubation (MoHoNGT). The original figure is in Traditional Chinese, with its text translated into English as appended below. (<b>a</b>) The mode selection screen, with a learning mode (left) and a quiz mode (right); (<b>b</b>) an overview of elements and their corresponding functions on the main interface, including the central area, the toolbar (left), the timer (top), the button to view learning objectives (top left), etc.; (<b>c</b>) dragging the virtual stethoscope, which is required for NGT intubation, and dropping it onto a virtual plate; (<b>d</b>) stretching out on the virtual NGT to measure tubing from the bridge of the nose to the earlobe; (<b>e</b>) pinching in to manipulate the virtual scissors; (<b>f</b>) a step-by-step instruction screen displaying an X-ray image; (<b>g</b>) a step-by-step instruction screen playing an endoscopic video demonstrating the anatomy alterations of the pharynx when the volunteer turned and lowered their head; (<b>h</b>) the virtual–real fusion view, featuring a user passing the virtual NGT into the patient (left), a green dot denoting the position of the NGT tip on an illustration of sagittal anatomical structures (upper right), and video frames being playing in real time in conjunction with the corresponding location of the NGT tip (lower right); (<b>i</b>) The final score and the step-by-step diagnostic report that will show up after a user finishes the quiz mode.</p>
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<p>Screenshots showcasing key features of the Mobile-based Hands-on Learning System for Nasogastric Tube Intubation (MoHoNGT). The original figure is in Traditional Chinese, with its text translated into English as appended below. (<b>a</b>) The mode selection screen, with a learning mode (left) and a quiz mode (right); (<b>b</b>) an overview of elements and their corresponding functions on the main interface, including the central area, the toolbar (left), the timer (top), the button to view learning objectives (top left), etc.; (<b>c</b>) dragging the virtual stethoscope, which is required for NGT intubation, and dropping it onto a virtual plate; (<b>d</b>) stretching out on the virtual NGT to measure tubing from the bridge of the nose to the earlobe; (<b>e</b>) pinching in to manipulate the virtual scissors; (<b>f</b>) a step-by-step instruction screen displaying an X-ray image; (<b>g</b>) a step-by-step instruction screen playing an endoscopic video demonstrating the anatomy alterations of the pharynx when the volunteer turned and lowered their head; (<b>h</b>) the virtual–real fusion view, featuring a user passing the virtual NGT into the patient (left), a green dot denoting the position of the NGT tip on an illustration of sagittal anatomical structures (upper right), and video frames being playing in real time in conjunction with the corresponding location of the NGT tip (lower right); (<b>i</b>) The final score and the step-by-step diagnostic report that will show up after a user finishes the quiz mode.</p>
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<p>Screenshots showcasing key features of the Mobile-based Hands-on Learning System for Nasogastric Tube Intubation (MoHoNGT). The original figure is in Traditional Chinese, with its text translated into English as appended below. (<b>a</b>) The mode selection screen, with a learning mode (left) and a quiz mode (right); (<b>b</b>) an overview of elements and their corresponding functions on the main interface, including the central area, the toolbar (left), the timer (top), the button to view learning objectives (top left), etc.; (<b>c</b>) dragging the virtual stethoscope, which is required for NGT intubation, and dropping it onto a virtual plate; (<b>d</b>) stretching out on the virtual NGT to measure tubing from the bridge of the nose to the earlobe; (<b>e</b>) pinching in to manipulate the virtual scissors; (<b>f</b>) a step-by-step instruction screen displaying an X-ray image; (<b>g</b>) a step-by-step instruction screen playing an endoscopic video demonstrating the anatomy alterations of the pharynx when the volunteer turned and lowered their head; (<b>h</b>) the virtual–real fusion view, featuring a user passing the virtual NGT into the patient (left), a green dot denoting the position of the NGT tip on an illustration of sagittal anatomical structures (upper right), and video frames being playing in real time in conjunction with the corresponding location of the NGT tip (lower right); (<b>i</b>) The final score and the step-by-step diagnostic report that will show up after a user finishes the quiz mode.</p>
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12 pages, 480 KiB  
Review
Neuroimmune Interactions in Pancreatic Cancer
by Jun Cheng, Rui Wang and Yonghua Chen
Biomedicines 2025, 13(3), 609; https://doi.org/10.3390/biomedicines13030609 - 2 Mar 2025
Viewed by 222
Abstract
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive primary malignancy, and recent technological advances in surgery have opened up more possibilities for surgical treatment. Emerging evidence highlights the critical roles of diverse immune and neural components in driving the aggressive behavior of PDAC. [...] Read more.
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive primary malignancy, and recent technological advances in surgery have opened up more possibilities for surgical treatment. Emerging evidence highlights the critical roles of diverse immune and neural components in driving the aggressive behavior of PDAC. Recent studies have demonstrated that neural invasion, neural plasticity, and altered autonomic innervation contribute to pancreatic neuropathy in PDAC patients, while also elucidating the functional architecture of nerves innervating pancreatic draining lymph nodes. Research into the pathogenesis and therapeutic strategies for PDAC, particularly from the perspective of neuroimmune network interactions, represents a cutting-edge area of investigation. This review focuses on neuroimmune interactions, emphasizing the current understanding and future challenges in deciphering the reciprocal relationship between the nervous and immune systems in PDAC. Despite significant progress, key challenges remain, including the precise molecular mechanisms underlying neuroimmune crosstalk, the functional heterogeneity of neural and immune cell populations, and the development of targeted therapies that exploit these interactions. Understanding the molecular events governing pancreatic neuroimmune signaling axes will not only advance our knowledge of PDAC pathophysiology but also provide novel therapeutic targets. Translational efforts to bridge these findings into clinical applications, such as immunomodulatory therapies and neural-targeted interventions, hold promise for improving patient outcomes. This review underscores the need for further research to address unresolved questions and translate these insights into effective therapeutic strategies for PDAC. Full article
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<p>The schematic illustrates the complex interplay between sympathetic nerves, parasympathetic nerves, sensory nerves, and immune cells within the tumor microenvironment of pancreatic ductal adenocarcinoma (PDAC). Key interactions include: (1) Sympathetic nerve signaling via adrenoceptor beta 2 (ADRB2) and its role in tumor progression [<a href="#B10-biomedicines-13-00609" class="html-bibr">10</a>,<a href="#B47-biomedicines-13-00609" class="html-bibr">47</a>]; (2) Parasympathetic nerve signaling via acetylcholine (Ach) and its impact on cancer stem cell (CSC) activity [<a href="#B12-biomedicines-13-00609" class="html-bibr">12</a>,<a href="#B48-biomedicines-13-00609" class="html-bibr">48</a>]; (3) Sensory nerve involvement through substance P (SP) and neurokinin-1 receptor (NK-1R) pathways, which promote tumor migration and immune modulation [<a href="#B25-biomedicines-13-00609" class="html-bibr">25</a>]. Additionally, the figure highlights potential therapeutic interventions, such as CXCR3 antagonists and anti-CCL21 strategies, targeting neuroimmune crosstalk in PDAC [<a href="#B49-biomedicines-13-00609" class="html-bibr">49</a>]. Ach, acetylcholine; IFN-γ, interferon-γ; TAMs, tumor-associated macrophages; TNF-α, tumor necrosis factor-α; NGF, nerve growth factor.</p>
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25 pages, 2703 KiB  
Review
Role of Gut Microbial Metabolites in Ischemic and Non-Ischemic Heart Failure
by Mohammad Reza Hatamnejad, Lejla Medzikovic, Ateyeh Dehghanitafti, Bita Rahman, Arjun Vadgama and Mansoureh Eghbali
Int. J. Mol. Sci. 2025, 26(5), 2242; https://doi.org/10.3390/ijms26052242 - 2 Mar 2025
Viewed by 296
Abstract
The effect of the gut microbiota extends beyond their habitant place from the gastrointestinal tract to distant organs, including the cardiovascular system. Research interest in the relationship between the heart and the gut microbiota has recently been emerging. The gut microbiota secretes metabolites, [...] Read more.
The effect of the gut microbiota extends beyond their habitant place from the gastrointestinal tract to distant organs, including the cardiovascular system. Research interest in the relationship between the heart and the gut microbiota has recently been emerging. The gut microbiota secretes metabolites, including Trimethylamine N-oxide (TMAO), short-chain fatty acids (SCFAs), bile acids (BAs), indole propionic acid (IPA), hydrogen sulfide (H2S), and phenylacetylglutamine (PAGln). In this review, we explore the accumulating evidence on the role of these secreted microbiota metabolites in the pathophysiology of ischemic and non-ischemic heart failure (HF) by summarizing current knowledge from clinical studies and experimental models. Elevated TMAO contributes to non-ischemic HF through TGF-ß/Smad signaling-mediated myocardial hypertrophy and fibrosis, impairments of mitochondrial energy production, DNA methylation pattern change, and intracellular calcium transport. Also, high-level TMAO can promote ischemic HF via inflammation, histone methylation-mediated vascular fibrosis, platelet hyperactivity, and thrombosis, as well as cholesterol accumulation and the activation of MAPK signaling. Reduced SCFAs upregulate Egr-1 protein, T-cell myocardial infiltration, and HDAC 5 and 6 activities, leading to non-ischemic HF, while reactive oxygen species production and the hyperactivation of caveolin-ACE axis result in ischemic HF. An altered BAs level worsens contractility, opens mitochondrial permeability transition pores inducing apoptosis, and enhances cholesterol accumulation, eventually exacerbating ischemic and non-ischemic HF. IPA, through the inhibition of nicotinamide N-methyl transferase expression and increased nicotinamide, NAD+/NADH, and SIRT3 levels, can ameliorate non-ischemic HF; meanwhile, H2S by suppressing Nox4 expression and mitochondrial ROS production by stimulating the PI3K/AKT pathway can also protect against non-ischemic HF. Furthermore, PAGln can affect sarcomere shortening ability and myocyte contraction. This emerging field of research opens new avenues for HF therapies by restoring gut microbiota through dietary interventions, prebiotics, probiotics, or fecal microbiota transplantation and as such normalizing circulating levels of TMAO, SCFA, BAs, IPA, H2S, and PAGln. Full article
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<p><b>Microbiota metabolites in the gut–heart axis.</b> (<b>A</b>) After consuming a regular diet, gastrointestinal enzymes take them apart into micronutrients such as betaine, L-carnitine, phosphatidylcholine, tryptophan, cysteine, phenylalanine, and non-digestible carbohydrates, including fibers such as inulin, pectin, and resistant starch. (<b>B</b>) The gut microbiota converts food-derived compounds into TMA, SCFAs, IPA, H<sub>2</sub>S, and phenylacetic acid (PAA). Also, it changes the duodenum-released primary bile acids into secondary bile acids. (<b>C</b>,<b>D</b>) They are reabsorbed into the portal vein and enter the liver. Flavin-containing Monooxygenase (FMO) transforms TMA into TMAO and releases it into the hepatic vein. Hepatocytes and enterocytes consume most SCFAs and IPA to tighten their intercellular junction and maintain intestinal integrity; the rest are released into the systemic circulation. In addition, secondary bile acids are either reabsorbed by the liver and go back to enterohepatic circulation or enter the systemic circulation to ultimately affect the heart. Microbiota-driven H<sub>2</sub>S regulates inflammation and tissue repair within the GI tract and as released circular gasotransmitter facilitates vasodilation and other systemic effects. Liver PAA conjugation with glutamine results in PAGln production and secretion into the portal vein and subsequently in systemic circulation.</p>
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<p><b>Gut dysbiosis derivatives in experimental models of ischemic and non-ischemic HF.</b> (<b>A</b>) Following gut dysbiosis and increased TMAO, either myocardial hypertrophy and fibrosis through TGF-ß/Smad signaling pathways and altered DNA methylation pattern or myocardial dysfunction by calcium transport and energy production impairment can lead to non-ischemic HF. A high level of TMAO accelerates inflammatory pathways, platelet hyperactivity, cholesterol accumulation, and foam cell formation, which can all lead to thrombosis and clot formation in ischemic HF. Furthermore, TMAO primes MAPK signaling, leading to ferroptosis-mediated cardiomyopathy. In addition, histone methylation-mediated chromatin remodeling leading to endothelial–myofibroblast transition and vascular fibrosis results in ischemic HF. (<b>B</b>) Reduction in SCFAs after gut dysbiosis upregulates Egr-1 protein and T-cell myocardial infiltration, and enhances HDAC 5 and 6 activities that, through the MKK3/P38/PRAK pathway, causes less angiogenesis and more apoptosis, resulting in non-ischemic HF. Also, SCFAs decrement through enhancement in ROS and inflammatory cytokines production and C3/CAV-1/ACE-2 axis activation can lead to ischemic HF. (<b>C</b>) Changes in BAs, such as reduced deoxycholic acid and increased taurocholate, stimulate IL-1 and IL-1ß expression and worsen contractility, respectively, and affect mitochondrial apoptosis, leading to non-ischemic and ischemic HF through infarct expansion; in addition, with BAs reduction, cholesterol accumulates and plaque formation enhances and myocardium becomes prone to ischemic HF.</p>
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33 pages, 19943 KiB  
Article
Sponge Morphology of Osteosarcoma Finds Origin in Synergy Between Bone Synthesis and Tumor Growth
by Arnaud Bardouil, Thomas Bizien, Jérome Amiaud, Alain Fautrel, Séverine Battaglia, Iman Almarouk, Tanguy Rouxel, Pascal Panizza, Javier Perez, Arndt Last, Chakib Djediat, Elora Bessot, Nadine Nassif, Françoise Rédini and Franck Artzner
Nanomaterials 2025, 15(5), 374; https://doi.org/10.3390/nano15050374 - 28 Feb 2025
Viewed by 179
Abstract
Osteosarcoma is medically defined as a bone-forming tumor with associated bone-degrading activity. There is a lack of knowledge about the network that generates the overproduction of bone. We studied the early stage of osteosarcoma development with mice enduring a periosteum injection of osteosarcoma [...] Read more.
Osteosarcoma is medically defined as a bone-forming tumor with associated bone-degrading activity. There is a lack of knowledge about the network that generates the overproduction of bone. We studied the early stage of osteosarcoma development with mice enduring a periosteum injection of osteosarcoma cells at the proximal third of the tibia. On day 7 (D7), tumor cells activate the over-synthesis of bone-like material inside the medulla. This overproduction of bone is quickly (D13) followed by degradation. Samples were characterized by microfocus small-angle X-ray scattering (SAXS), wide-angle X-ray scattering (WAXS), optical and electron microscopies, and micro-indentation. This intramedullary apatite–collagen composite synthesis highlights an unknown network of bone synthesis stimulation by extramedullary osteosarcoma cells. This synthesis activation mechanism, coupled with the well-known bone induced osteosarcoma growth activation, produces a rare synergy that may enlighten the final osteosarcoma morphology. With this aim, a 3D cellular automaton was developed that only included two rules. Simulations can accurately reproduce the bi-continuous sponge macroscopic structure that was analyzed from mice tumor micro-tomography. This unknown tumor activation pathway of bone synthesis, combined with the known bone activation of tumor growth, generates a positive feedback synergy explaining the unusual sponge-like morphology of this bone cancer. From a biomaterials point of view, how nature controls self-assembly processes remains an open question. Here, we show how the synergy between two biological growth processes is responsible for the complex morphology of a bone tumor. This highlights how hierarchical morphologies, accurately defined from the nanometer to the centimeter scale, can be controlled by positive feedback between the self-assembly of a scaffold and the deposition of solid material. Full article
(This article belongs to the Section Biology and Medicines)
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<p>Incremental slices pictures 9.5 mm × 14.3 mm pictures of control, D13, and D7 sample slices. The incremental slices are numbered on the left, with support material and selected samples color-coded. This table allows the comparison of trabecular material in the medium-sized cavity between samples. The location of the epiphysis is suggested with a red-dot half-circle, with the diaphysis opposite from it.</p>
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<p>Thin-slice BSE and optical microscopy. (<b>a</b>) Back-Scattering Electron microscopy from a D7.2 medullar cavity trabeculae, with different sites molar ratio of calcium and phosphorus, where the inset is a representative EDS spectrum. (<b>b</b>) BSE microscopy from healthy and sarcoma-inoculated tissue (D7.2 thin slice). Intensity is relative to the amount of mineralization. Zooming in showcases the creeping mineralization occurring in the inoculated sample’s growth cartilage. (<b>c</b>) Optical microscopy image of a thin slice of trabecular bone from D7.2. Colored dots in the bone matrix are osteocytes, while the layer on the periphery of the bone is made of bordering cells and quiescent osteoblasts.</p>
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<p>Slices of samples from inoculated mice tibia. (<b>a</b>,<b>b</b>) Two slices, D7.1 and D7.2, of the same 7-day-inoculated mouse tibia. (<b>c</b>) Slice D13 of the 13-day-inoculated mouse tibia.</p>
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<p>Control sample data. (<b>a</b>) Optic microscopy picture of control sample slice. (<b>b</b>) Maps of SAXS patterns’ analysis for intensity, orientation (<b>c</b>), and anisotropy (<b>d</b>), realized on apatite signal q ∈ 0.0423;0.250 Å<sup>−1</sup>. Intensity correlates with the amount of hydroxyapatite present, orientation is the direction of the diffracted signal, and anisotropy is a measure of the orientational organization.</p>
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<p>SAXS patterns of murine bone samples. B is the legend; the upper part is on a linear scale to display b, the lateral collagen packing, between 0.9 and 1.2 nm. We can observe, in this part, that the prevalence of the collagen packing signal and anisotropy depends on the type of bone material. Orientation is aligned with the apatite signal in the lower left part of B, which is in continuity with the upper part, albeit with the scale changed to logarithmic to better observe the diffusion signal from apatite crystals. In a, we can observe the intensity of the apatite signal, the anisotropy (degree of deformation from round which is without orientation), and the orientation of the apatite crystals at the given spot of the bone. The lower right part of B is also in a log scale with an 8× magnification to observe c, the collagen axial period signal, and how it appears clearer with greater distance from the growth cartilage (higher values of m in the figure). T is the tendon signal, with a strong type I collagen signal. Cortical D7, D13, and H are cortical bone from, respectively, the inoculated samples at 7 and 13 days and a healthy control sample. Growth cartilage is the growth cartilage of those samples. The rest m is the trabecular bone in the medullar cavity of said samples near the growth cartilage. The increasing number after m is the signal from further away in the medullar cavity of, respectively, the inoculated samples at 7 and 13 days.</p>
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<p>One-dimensional SAXS spectra of infected bone samples data. (<b>a</b>) Examples of radially integrated data of apatite signals from inoculated samples and the superimposed Sasfit fit. Trabecular bone from the 13-day-inoculated sample, and three different distances from growth cartilage sarcoma-induced bone-like material in the 7-day-inoculated diaphysis. (<b>b</b>) Zoom-in on the quasi-hexagonal peak of lateral collagen packing (q = 0.54 Å<sup>−1</sup>) and a secondary peak coherent with the first in presence, signal orientation, and anisotropy (q = 0.72 Å<sup>−1</sup>).</p>
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<p>Maps of SAXS patterns analysis in terms of intensity (<b>a</b>–<b>c</b>), anisotropy (<b>d</b>–<b>f</b>), and orientation (<b>g</b>–<b>i</b>), realized at apatite signal q ∈ 0.0423;0.250 Å<sup>−1</sup>. Samples are two slices of 7-day-inoculated bone (D7.1 and D7.2) and a slice of 13-day-inoculated bone (D13). Each map results from the analysis of 40,000 2D X-ray scattering patterns. Intensity is an indicator of apatite presence and comparative quantities, with regions of interest being differences between trabecular and medullar bone, epiphysis and diaphysis, and the gradient into diaphysis from the growth cartilage. Apatite orientation is typically aligned with bone structure. One hope was to witness some decrease in organization correlating with osteosarcoma development. Here, we witness the homogeneity of diaphysis bone orientation versus the complex structure of epiphysis. The standard deviation in a 400-point region of diaphysis is &gt;4°. Higher anisotropy values indicate a higher degree of orientation homogeneity, and here all samples display an increasing gradient in the diaphysis starting from the growth cartilage, displaying a dynamic of aging and apatite evolution in the diaphysis. A 350 data-point region in the higher values of map (<b>e</b>) gives an average of 0.76 for a 0.13 standard deviation.</p>
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<p>Maps of SAXS 1D spectra analysis with first slope value (<b>a</b>–<b>c</b>), second slope value (<b>d</b>–<b>f</b>), and line fit intersection position (<b>g</b>–<b>i</b>) of the bone apatite crystals’ signal. Samples are two slices of 7-day-inoculated bone (D7.1 and D7.2) and a slice of 13-day-inoculated bone (D13). Slopes are determined by the log/log linear fit of the 1D SAXS signal in the q ∈ 0.042;0.073 Å<sup>−1</sup> range for the first slope and the q ∈ 0.150;0.250 Å<sup>−1</sup> range for the second. The line intersection position is calculated from fits values. Each map results from the analysis of 40,000 2D X-ray scattering patterns. The first slope value is in the Fourier zone and refers to apatite crystals’ shape, with values of 2 being platelets and values of 1 being needles, which indicates, in the diaphysis gradient of the growth cartilages, an evolution towards what could be considered needles for mature bone, like in the epiphysis, although far less so in the 13-days sample. The average of 300 data points in (<b>b</b>) the rightmost part is 1.18, with a standard deviation of 0.14. The second slope is for the Porod zone, with values of 3 being a rough interface for apatite, and 4 being smooth. In addition to the shape evolution in the bone, we have a gradient indicating a smoothing of the apatite interface across samples. In the same zone as previously, the average value is 3.85 for a standard deviation of 0.04. Slopes’ intersection q position correlates with crystal perimeter and displays another diaphysis evolution of apatite with a perimeter gradient increase.</p>
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<p>Mappings of collagen lateral packing peaks’ intensity and calculated crystal cell size. The amplitude of the peaks of collagen lateral packing (<b>a</b>–<b>f</b>) and quasi-constant interdistance (d in <a href="#nanomaterials-15-00374-f010" class="html-fig">Figure 10</a>) (<b>g</b>–<b>i</b>) size. Lateral packing peaks are on q ranges of 0.51–0.59 Å<sup>−1</sup> and 0.685–0.765 Å<sup>−1</sup> and cell sizes are calculated from their respective indexations as (11) and (20) planes. Samples are two slices of 7-day-inoculated bone (D7.1 and D7.2) and a slice of 13-day-inoculated bone (D13). Each map results from the analysis of 40,000 2D X-ray scattering patterns. The q<sub>11</sub> orientation is very present in cartilages and sinew (white saturated parts), with higher values besides those correlating with high intensity values (<a href="#nanomaterials-15-00374-f007" class="html-fig">Figure 7</a>a–c). The q<sub>20</sub> orientation peak is for its part exclusive to bone and correlated with the first. The calculated crystalline cell size is near homogeneous in post-growth cartilage diaphysis, with an average of 11.68 Å with a standard deviation of 0.13 Å over 3500 data points along the length of sample D7.2.</p>
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<p>Collagen interdistances shifting via the anisotropic deformation of a rectangular sub-lattice (hyphen black), with a constant interdistance (d). The vales of (2;0) and (1;1) are the smallest-angle diffuse scatterings of this collagen packing.</p>
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<p>Mappings of collagen lateral packing peaks’ maximum position. Lateral packing peaks are in the q ranges of 0.51–0.59 Å<sup>−1</sup> of the (11) plane and of 0.685–0.765 Å<sup>−1</sup> of the (20) plane. Samples caption are two slices of 7-day-inoculated bone, D7.1 (<b>a</b>,<b>d</b>) and D7.2 (<b>b</b>,<b>e</b>) and a slice of 13-day-inoculated bone, D13 (<b>c</b>,<b>f</b>). Each map results from the analysis of 40,000 2D X-ray scattering patterns. The evolution of peaks in q position values in the diaphysis correlates with all the previously seen gradients and seems to indicate a shift in collagen packing fitting with apatite crystal shape, size, and interface.</p>
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<p>Mappings of collagen lateral packing peaks’ maximum position. Lateral packing peaks are in the q ranges of 0.51–0.59 Å<sup>−1</sup> of the (11) plane and of 0.685–0.765 Å<sup>−1</sup> of the (20) plane. Samples caption are two slices of 7-day-inoculated bone, D7.1 (<b>a</b>,<b>d</b>) and D7.2 (<b>b</b>,<b>e</b>) and a slice of 13-day-inoculated bone, D13 (<b>c</b>,<b>f</b>). Each map results from the analysis of 40,000 2D X-ray scattering patterns. The evolution of peaks in q position values in the diaphysis correlates with all the previously seen gradients and seems to indicate a shift in collagen packing fitting with apatite crystal shape, size, and interface.</p>
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<p>(<b>a</b>) Maps obtained from the 256 WAXS pattern of D7.2, evaluated from the crystalline apatite 002 peak amplitude. (<b>b</b>) Staggered WAXS spectra along the red line in (<b>a</b>), with the classical indexation of apatite crystalline peaks. No signal associated with sarcomatic bone apatite can be witnessed in these measures at such early stages.</p>
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<p>Micro-indentation Marten hardness maps on healthy control sample and inoculated samples at 7 and 13 days. Red circles diameter is proportional to the measured hardness value obtained at the site of the circle center.</p>
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<p>Left: osteosarcoma mouse tibia MicroCT (<b>top</b>) with a slice example (green in the <b>middle</b>) and a zoom (<b>bottom</b>). Center: 3D surface reconstruction from MicroCT data of the bone topology (white: high density) and sarcoma cells (low density: red). Right: 3D simulation model with the same color code. The left parts are the template from which the 3D surface reconstruction were performed by using certain signal levels cut-offs to separate bone and sarcoma, providing a reference structure to analyze in comparison to simulated structures. FFT were used to determine some underlying tendencies in the measured tomography structure and in an attempt to quantify the level of disorder the simulation must reach.</p>
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<p>Simulation results sample. Comparison of simulation results with variation in one or two parameters. (<b>a</b>) d0—maximum influence distance, affecting structure characteristic sizes and shape disparity. (<b>b</b>) η—distant influence ratio ponderation, affecting structures characteristic sizes and connectivity levels. (<b>c</b>) α—species propagation speed comparative ratio, affecting the presence ratio and connectivity levels.</p>
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<p>The evolution of a simulation at t iterations, with a set of parameters (right) that result in our best approximation of osteosarcoma’s disordered sponge-like topology. A picture of an osteosarcomatous human bone [<a href="#B35-nanomaterials-15-00374" class="html-bibr">35</a>] (<b>bottom</b>) is given for reference [<a href="#B51-nanomaterials-15-00374" class="html-bibr">51</a>]. The simulated bones are represented in white and the sarcomatic flesh is shown in gray, with black here used as an inert environment. The mechanism of propagation is based on a positive cross-catalysis process.</p>
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<p>(<b>a</b>) The proposed cycle of tumor development by synergy between bone growth and tumor cell proliferation, in agreement with all observations and simulation. (<b>b</b>) The proposed early step of osteosarcoma development in the mouse model after extracortical cancer cell inoculation.</p>
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23 pages, 5185 KiB  
Article
Generative Adversarial Framework with Composite Discriminator for Organization and Process Modelling—Smart City Cases
by Nikolay Shilov, Andrew Ponomarev, Dmitry Ryumin and Alexey Karpov
Smart Cities 2025, 8(2), 38; https://doi.org/10.3390/smartcities8020038 - 28 Feb 2025
Viewed by 443
Abstract
Smart city operation assumes dynamic infrastructure in various aspects. However, organization and process modelling require domain expertise and significant efforts from modelers. As a result, such processes are still not well supported by IT systems and still mostly remain manual tasks. Today, machine [...] Read more.
Smart city operation assumes dynamic infrastructure in various aspects. However, organization and process modelling require domain expertise and significant efforts from modelers. As a result, such processes are still not well supported by IT systems and still mostly remain manual tasks. Today, machine learning technologies are capable of performing various tasks including those that have normally been associated with people; for example, tasks that require creativeness and expertise. Generative adversarial networks (GANs) are a good example of this phenomenon. This paper proposes an approach to generating organizational and process models using a GAN. The proposed GAN architecture takes into account both tacit expert knowledge encoded in the training set sample models and the symbolic knowledge (rules and algebraic constraints) that is an essential part of such models. It also pays separate attention to differentiable functional constraints, since learning those just from samples is not efficient. The approach is illustrated via examples of logistic system modelling and smart tourist trip booking process modelling. The developed framework is implemented in a publicly available open-source library that can potentially be used by developers of modelling software. Full article
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<p>The principle of the composite discriminator operation.</p>
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<p>A sample model of smart logistics system modelling.</p>
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<p>Block diagram of the ATGM algorithm.</p>
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<p>Block diagram of the ATCD algorithm.</p>
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<p>Block diagram of the AMGS algorithm.</p>
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<p>Accuracy for varying batch sizes: (<b>a</b>) 16, (<b>b</b>) 200, and (<b>c</b>) 500.</p>
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<p>Illustration of the generated process model for smart tourist trip booking (variant 4).</p>
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<p>Comparison of the GAN training process using the developed composite discriminator with a conventional GAN.</p>
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29 pages, 9545 KiB  
Article
A Class of Perfectly Secret Autonomous Low-Bit-Rate Voice Communication Systems
by Jelica Radomirović, Milan Milosavljević, Sara Čubrilović, Zvezdana Kuzmanović, Miroslav Perić, Zoran Banjac and Dragana Perić
Symmetry 2025, 17(3), 365; https://doi.org/10.3390/sym17030365 - 27 Feb 2025
Viewed by 163
Abstract
This paper presents an autonomous perfectly secure low-bit-rate voice communication system (APS-VCS) based on the mixed-excitation linear prediction voice coder (MELPe), Vernam cipher, and sequential key distillation (SKD) protocol by public discussion. An authenticated public channel can be selected in a wide range, [...] Read more.
This paper presents an autonomous perfectly secure low-bit-rate voice communication system (APS-VCS) based on the mixed-excitation linear prediction voice coder (MELPe), Vernam cipher, and sequential key distillation (SKD) protocol by public discussion. An authenticated public channel can be selected in a wide range, from internet connections to specially leased radio channels. We found the source of common randomness between the locally synthesized speech signal at the transmitter and the reconstructed speech signal at the receiver side. To avoid information leakage about open input speech, the SKD protocol is not executed on the actual transmitted speech signal but on artificially synthesized speech obtained by random selection of the linear spectral pairs (LSP) parameters of the speech production model. Experimental verification of the proposed system was performed on the Vlatacom Personal Crypto Platform for Voice encryption (vPCP-V). Empirical measurements show that with an adequate selection of system parameters for voice transmission of 1.2 kb/s, a secret key rate (KR) of up to 8.8 kb/s can be achieved, with a negligible leakage rate (LR) and bit error rate (BER) of order 103 for various communications channels, including GSM 3G and GSM VoLTE networks. At the same time, by ensuring perfect secrecy within symmetric encryption systems, it further highlights the importance of the symmetry principle in the field of information-theoretic security. To our knowledge, this is the first autonomous, perfectly secret system for low-bit-rate voice communication that does not require explicit prior generation and distribution of secret keys. Full article
(This article belongs to the Special Issue Symmetry and Asymmetry in Cryptography, Second Edition)
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<p>Generic scheme of low-bit-rate secure communications using MELPe voice coder. The cryptographic part of the system consists of the KSG(K) generator of the binary pseudorandom sequence <math display="inline"><semantics> <mrow> <msub> <mrow> <mi>C</mi> </mrow> <mrow> <mi>K</mi> </mrow> </msub> </mrow> </semantics></math>, which is added modulo 2 with the binary sequence that comes from the analyzer. <math display="inline"><semantics> <mrow> <mi>C</mi> <mi>R</mi> <mo>(</mo> <mi>S</mi> <mo>,</mo> <mo> </mo> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> <mo>)</mo> </mrow> </semantics></math> is denoted as the source of common randomness, formed from the input speech signal <math display="inline"><semantics> <mrow> <mi>S</mi> </mrow> </semantics></math> on the transmitter side and the speech signal <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </semantics></math> synthesized on the receiver side.</p>
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<p>Extension of the generic scheme shown in <a href="#symmetry-17-00365-f001" class="html-fig">Figure 1</a> with local MELPe synthesis on the transmitter side. <math display="inline"><semantics> <mrow> <mi>C</mi> <mi>R</mi> <mo>(</mo> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> </mrow> </msub> <mo>,</mo> <mo> </mo> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> <mo>)</mo> </mrow> </semantics></math> is denoted as the source of common randomness, formed from the locally synthesized speech signal <math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> </mrow> </msub> </mrow> </semantics></math> on the transmitter side and the speech signal <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </semantics></math> synthesized on the receiver side.</p>
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<p>An example of the dependence of the number of parity bits exchanged over the public channel in AD phase, as a function of the initial Hamming distance of Alice and Bob’s sequence. SKD algorithm parameters: initial sequence length <math display="inline"><semantics> <mrow> <mi>N</mi> <mo>=</mo> <mn>8640</mn> </mrow> </semantics></math>, number of iterations of the BP algorithm <math display="inline"><semantics> <mrow> <mi>s</mi> <mo>=</mo> <mn>1</mn> <mo>,</mo> <mo> </mo> <mn>2</mn> <mo>,</mo> <mo> </mo> <mn>3</mn> <mo>,</mo> <mo> </mo> <mn>4</mn> <mo>,</mo> <mo> </mo> <mn>5</mn> </mrow> </semantics></math>.</p>
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<p>Generic scheme of the proposed APS-VCS. The pseudo-random string <math display="inline"><semantics> <mrow> <mi>C</mi> </mrow> </semantics></math> is the one-time secret key of the Vernam cipher, which is read from the Secret Key FIFO buffer synchronously on Alice’s and Bob’s sides. The contents of the FIFO buffer are filled with distilled secret keys received by applying the SKD protocol to the common randomness source <math display="inline"><semantics> <mrow> <mi>C</mi> <mi>R</mi> <mo>(</mo> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> <mi>A</mi> </mrow> </msub> </mrow> </semantics></math>,<math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> <mi>B</mi> </mrow> </msub> </mrow> </semantics></math>). Signals <math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> <mi>A</mi> </mrow> </msub> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> <mi>B</mi> </mrow> </msub> </mrow> </semantics></math> were obtained by local LP syntheses over the same LSP parameters synchronously read from the FIFO buffer.</p>
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<p>Vlatacom Personal Crypto Platform for voice encryption designed for use in any available communication system (Voice over Internet Protocol (VoIP), public, landline, mobile, or satellite).</p>
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<p>Vlatacom True Random Number Generator based on a natural process entropy source with built-in randomness checking system.</p>
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<p>Cross-correlation between the original input speech signal <math display="inline"><semantics> <mrow> <mi>S</mi> </mrow> </semantics></math> and the synthesized received signal <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </semantics></math> for speaker No. 1 from the test set.</p>
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<p>Cross-correlation between the locally synthesized speech signal <math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> </mrow> </msub> </mrow> </semantics></math> on the transmitter side and the synthesized signal on the receiver side <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </semantics></math> for speaker No. 1 from the test set.</p>
Full article ">Figure 9
<p>Logarithm ratio of <math display="inline"><semantics> <mrow> <mstyle scriptlevel="0" displaystyle="true"> <mfrac> <mrow> <mi>C</mi> <mi>r</mi> <mi>o</mi> <mi>s</mi> <mi>s</mi> <mi>C</mi> <mi>o</mi> <mi>r</mi> <mi>r</mi> <mfenced separators="|"> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> </mrow> </msub> <mo>,</mo> <mo> </mo> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </mfenced> </mrow> <mrow> <mi>C</mi> <mi>r</mi> <mi>o</mi> <mi>s</mi> <mi>s</mi> <mi>C</mi> <mi>o</mi> <mi>r</mi> <mi>r</mi> <mfenced separators="|"> <mrow> <mi>S</mi> <mo>,</mo> <mo> </mo> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </mfenced> </mrow> </mfrac> </mstyle> </mrow> </semantics></math> for all 24 test samples of the speech signals. Only in the case of test sample No. 3 is this ratio less than 1, which means that the cross-correlation <math display="inline"><semantics> <mrow> <mi>C</mi> <mi>r</mi> <mi>o</mi> <mi>s</mi> <mi>s</mi> <mi>C</mi> <mi>o</mi> <mi>r</mi> <mi>r</mi> <mfenced separators="|"> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> </mrow> </msub> <mo>,</mo> <mo> </mo> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </mfenced> </mrow> </semantics></math> is almost always higher than the cross-correlation <math display="inline"><semantics> <mrow> <mi>C</mi> <mi>r</mi> <mi>o</mi> <mi>s</mi> <mi>s</mi> <mi>C</mi> <mi>o</mi> <mi>r</mi> <mi>r</mi> <mfenced separators="|"> <mrow> <mi>S</mi> <mo>,</mo> <mo> </mo> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> </mfenced> </mrow> </semantics></math>.</p>
Full article ">Figure 10
<p>Generator of locally synthesized signals <math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> <mi>A</mi> </mrow> </msub> </mrow> </semantics></math> based on random LSP parameters, periodic pulse input <math display="inline"><semantics> <mrow> <mi>δ</mi> </mrow> </semantics></math>, and additive noise <math display="inline"><semantics> <mrow> <mi>ξ</mi> </mrow> </semantics></math> at the input to the LP synthesizer filter.</p>
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<p>Generator of locally synthesized signals <math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>S</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <mi>l</mi> <mi>A</mi> </mrow> </msub> </mrow> </semantics></math> based on random LSP parameters, periodic pulse input <math display="inline"><semantics> <mrow> <mi>δ</mi> </mrow> </semantics></math>, and additive noise <math display="inline"><semantics> <mrow> <mi>ξ</mi> </mrow> </semantics></math> at the output of the LP synthesizer filter.</p>
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<p>Information flows of importance for the analysis of distilled secret keys in the system. The SKD protocol consists of the BP algorithm for the AD phase, the Winnow algorithm for the IR phase, and an optimal Huffman encoder. The PA phase is based on universal hash functions.</p>
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<p>Alice, Bob, and Eve have the same Huffman encoder. Blue line: Probability density of conditional Renyi entropy <math display="inline"><semantics> <mrow> <msup> <mrow> <mi>R</mi> </mrow> <mrow> <mo>∗</mo> </mrow> </msup> <mfenced separators="|"> <mrow> <msub> <mrow> <mi>w</mi> </mrow> <mrow> <mi>i</mi> </mrow> </msub> </mrow> <mrow> <msub> <mrow> <mi>e</mi> </mrow> <mrow> <mi>i</mi> </mrow> </msub> <mo>,</mo> <msub> <mrow> <mi>K</mi> </mrow> <mrow> <mi>i</mi> <mo>−</mo> <mn>1</mn> </mrow> </msub> </mrow> </mfenced> </mrow> </semantics></math> when the random LSP parameters of Alice, Bob, and Eve synthesizers are the same, i.e., <math display="inline"><semantics> <mrow> <msub> <mrow> <mi>L</mi> <mi>S</mi> <mi>P</mi> </mrow> <mrow> <mi>A</mi> </mrow> </msub> <mo>=</mo> <msub> <mrow> <mi>L</mi> <mi>S</mi> <mi>P</mi> </mrow> <mrow> <mi>B</mi> </mrow> </msub> <mo>=</mo> <msub> <mrow> <mi>L</mi> <mi>S</mi> <mi>P</mi> </mrow> <mrow> <mi>E</mi> </mrow> </msub> </mrow> </semantics></math>. Orange line: Probability density of conditional Renyi entropy <math display="inline"><semantics> <mrow> <mi>R</mi> <mfenced separators="|"> <mrow> <msub> <mrow> <mi>w</mi> </mrow> <mrow> <mi>i</mi> </mrow> </msub> </mrow> <mrow> <msub> <mrow> <mi>e</mi> </mrow> <mrow> <mi>i</mi> </mrow> </msub> </mrow> </mfenced> </mrow> </semantics></math> when <math display="inline"><semantics> <mrow> <msub> <mrow> <mi>L</mi> <mi>S</mi> <mi>P</mi> </mrow> <mrow> <mi>A</mi> </mrow> </msub> <mo>=</mo> <msub> <mrow> <mi>L</mi> <mi>S</mi> <mi>P</mi> </mrow> <mrow> <mi>B</mi> </mrow> </msub> <mo>≠</mo> <msub> <mrow> <mi>L</mi> <mi>S</mi> <mi>P</mi> </mrow> <mrow> <mi>E</mi> </mrow> </msub> </mrow> </semantics></math>.</p>
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<p>Empirical distribution of Huffman–Renyi distance <math display="inline"><semantics> <mrow> <msub> <mrow> <mi>D</mi> </mrow> <mrow> <mi>H</mi> <mi>R</mi> </mrow> </msub> <mo> </mo> </mrow> </semantics></math> (<math display="inline"><semantics> <mrow> <msub> <mrow> <mover accent="true"> <mrow> <mi>D</mi> </mrow> <mo>¯</mo> </mover> </mrow> <mrow> <mi>H</mi> <mi>R</mi> </mrow> </msub> <mo>=</mo> <mn>1.84</mn> <mo>,</mo> <mo> </mo> <msub> <mrow> <mover accent="true"> <mrow> <mi>σ</mi> </mrow> <mo>^</mo> </mover> </mrow> <mrow> <msub> <mrow> <mi>D</mi> </mrow> <mrow> <mi>H</mi> <mi>R</mi> </mrow> </msub> </mrow> </msub> <mo>=</mo> <mn>2.39</mn> </mrow> </semantics></math>) for synthesized signals with parameter SNR = 39.9 dB.</p>
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<p>Interdependencies of operational ranges of main quantities: secret key rate, SNR of synthesized signals, innovation entropy rate, and security margin in the synthesis of APS-VCS system. Security margin dependence on SNR is shown for the secret key rate of 2.5 kb/s.</p>
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<p>APS-VCS system function in transmission mode. The system function in reception mode is fundamentally of the same structure.</p>
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20 pages, 6161 KiB  
Article
Differences in Formation of Prepuce and Urethral Groove During Penile Development Between Guinea Pigs and Mice Are Controlled by Differential Expression of Shh, Fgf10 and Fgfr2
by Shanshan Wang and Zhengui Zheng
Cells 2025, 14(5), 348; https://doi.org/10.3390/cells14050348 - 27 Feb 2025
Viewed by 164
Abstract
The penile tubular urethra forms by canalization of the urethral plate without forming an obvious urethral groove in mice, while the urethral epithelium forms a fully open urethral groove before urethra closure through the distal-opening-proximal-closing process in humans and guinea pigs. Our knowledge [...] Read more.
The penile tubular urethra forms by canalization of the urethral plate without forming an obvious urethral groove in mice, while the urethral epithelium forms a fully open urethral groove before urethra closure through the distal-opening-proximal-closing process in humans and guinea pigs. Our knowledge of the mechanism of penile development is mainly based on studies in mice. To reveal how the fully opened urethral groove forms in humans and guinea pigs, we compared the expression patterns and levels of key developmental genes using in situ hybridization and quantitative PCR during glans and preputial development between guinea pigs and mice. Our results revealed that, compared with mouse preputial development, which started before sexual differentiation, preputial development in guinea pigs was delayed and initiated at the same time that sexual differentiation began. Fgf10 was mainly expressed in the urethral epithelium in developing genital tubercle (GT) of guinea pigs. The relative expression of Shh, Fgf8, Fgf10, Fgfr2, and Hoxd13 was reduced more than 4-fold in the GT of guinea pigs compared to that of mice. Hedgehog and Fgf inhibitors induced urethral groove formation and restrained preputial development in cultured mouse GT, while Shh and Fgf10 proteins induced preputial development in cultured guinea pig GT. Our discovery suggests that the differential expression of Shh and Fgf10/Fgfr2 may be the main reason a fully opened urethral groove forms in guinea pigs, and it may be similar in humans as well. Full article
(This article belongs to the Section Reproductive Cells and Development)
Show Figures

Figure 1

Figure 1
<p>Histological structure of E27 guinea pig and E13.75 mouse genital tubercles (GTs). Images (<b>A</b>,<b>I</b>) are ventral views of E27 guinea pig (<b>A</b>) and E13.75 mouse (<b>I</b>) GTs with distal at the top. All sections of guinea pig (<b>B</b>–<b>H</b>) and mouse (<b>J</b>–<b>O</b>) are transverse through GT with dorsal at the top. Broken lines on images (<b>A</b>,<b>I</b>) indicate the planes of sections. Note the prepuce starts to form in E13.75 mice, but not in E27 guinea pigs. Abbrev: eep, epidermal epithelium; gm, glans mesenchyme; gp, glans penis; mc, mesenchyme; pm, preputial mesenchyme; ppl, preputial lamina; ps, preputial swelling; ss, scrotal swelling; uc, urethral canal; ue, urethral epithelium; up, urethral plate. Scale bars: 250 µm.</p>
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<p>Histological structure of E29 guinea pig (GP) and E16.5 mouse penises. Images (<b>A</b>,<b>I</b>) are ventral views of E29 guinea pig (<b>A</b>) and E16.5 mouse (<b>I</b>) penises, with distal at the top. All sections of the guinea pig (<b>B</b>–<b>H</b>) and mouse (<b>J</b>–<b>O</b>) are transverse through penises, with dorsal at the top. Broken lines on images (<b>A</b>,<b>I</b>) indicate the planes of sections. Note that the prepuce starts to form at E29 in guinea pigs but reaches to the distal glans penis (<b>K</b>) at E16.5 in mice. Abbrev: et, epithelium tag; pg, preputial gland; u, urethra; ug, urethral groove; eep, gm, pm, ppl, ps, ss, uc, and ue are the same as in <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>. Scale bars: 250 µm.</p>
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<p>Histological structure of the E33 guinea pig penis. Image (<b>A</b>) shows a ventral view of the E33 guinea pig penis with the distal end at the top. Sections of (<b>B</b>–<b>K</b>) are transverse through the penis, with dorsal at the top. Broken lines on the image (<b>A</b>) indicate the planes of section. Sections of (<b>L</b>–<b>N</b>) show sagittal planes of E33 guinea pig penis with dorsal at the left. Note that the prepuce reaches the distal glans penis at E33 in guinea pigs. Abbrev: eep, gm, pm, ppl, and ue are the same as in <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>; et, pg, and u are the same as in <a href="#cells-14-00348-f002" class="html-fig">Figure 2</a>. Scale bars: 250 µm.</p>
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<p>Cell proliferation in guinea pig preputial development. Images show immunolocalization of BrdU (dark brown) on transverse sections of guinea pig penises at E29 (<b>A</b>–<b>F</b>) and E33 (<b>J</b>–<b>L</b>) with dorsal at the top. (<b>A</b>,<b>C</b>,<b>E</b>) are sections through the proximal region (See image in <a href="#cells-14-00348-f002" class="html-fig">Figure 2</a>A, between plane F and H) of the E29 guinea pig penis with the order from proximal to more distal as (<b>E</b>), (<b>C</b>), and (<b>A</b>). (<b>B</b>,<b>D</b>,<b>F</b>) are higher magnification images of the areas marked by blue boxes in (<b>A</b>,<b>C</b>,<b>E</b>), respectively. (<b>G</b>,<b>H</b>,<b>I</b>) show the number of BrdU-positive cells in a newly formed small region of preputial mesenchyme (pm) and surrounding epidermal epithelium (eep) counted from (<b>B</b>,<b>D</b>,<b>F</b>), respectively. Note that epidermal epithelia cells proliferate and invaginate to form original preputial lamina (<b>B</b>,<b>F</b>,<b>I</b>) and separate a small portion of preputial mesenchyme (<b>C</b>,<b>D</b>,<b>H</b>), and then the preputial mesenchymal cells proliferate and evaginate distally (<b>A</b>,<b>B</b>,<b>G</b>). (<b>J</b>,<b>L</b>) are distal (<b>J</b>) and proximal (<b>L</b>) sections of the E33 guinea pig penis, and (<b>K</b>) is a higher magnification image of the area marked by a blue box in (<b>J</b>). Note that the basal layer of epithelial cells (the deepest layer above the green line) proliferates to increase epidermal epithelial cell layers, and preputial mesenchymal cells (inside the black line) proliferate to evaginate distally (<b>J</b>,<b>K</b>), In the proximal section (<b>L</b>), BrdU-positive cells can be observed in developing preputial lamina (inside blue line). The data in (<b>G</b>–<b>I</b>) are mean (<span class="html-italic">n</span> = 3) ± standard error (SE), ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. Abbrev: dpl, developing preputial lamina; eep, gm, pm, and ue are the same as in <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>, u is the same as <a href="#cells-14-00348-f002" class="html-fig">Figure 2</a>. Scale bars: 100 μm.</p>
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<p>In situ gene expression analysis of guinea pig genital tubercle (GT). Images are ventral (<b>A</b>–<b>C</b>,<b>E</b>,<b>G</b>,<b>I</b>,<b>J</b>,<b>M</b>,<b>O</b>,<b>Q</b>) or dorsal (<b>D</b>,<b>F</b>,<b>H</b>,<b>K</b>,<b>L</b>,<b>N</b>,<b>P</b>,<b>R</b>) views of E23-E23.5 guinea pig (excerpt for J, which is E22) GTs with the distal at the top. The tail has been removed from all embryos. Purple or blue staining in each image indicates the gene expression domain. Developmental stages are labeled upright in each image. Note that <span class="html-italic">Shh</span> is expressed in the urethral epithelium (<b>A</b>) and its receptor is expressed in the adjacent mesenchyme (<b>B</b>). <span class="html-italic">Hoxd13</span> (<b>C</b>,<b>D</b>), <span class="html-italic">Bmp4</span> (<b>E</b>,<b>F</b>), and <span class="html-italic">Wnt5a</span> (<b>Q</b>,<b>R</b>) are expressed in genital mesenchyme. <span class="html-italic">Bmp7</span> is expressed in the distal urethral epithelium (very weak), genital mesenchyme, and developing mammary glands (<b>G</b>,<b>H</b>). <span class="html-italic">Fgf8</span> expression is located in the urethral epithelium at E22 (<b>J</b>), but it is only weakly expressed in the distal tip part of the urethral epithelium and can only be seen in dorsal view at E23 (<b>I</b>,<b>K</b>,<b>L</b>). <span class="html-italic">Fgf10</span> expression in genital mesenchyme is very weak and is relatively strong in urethral epithelium (<b>M</b>,<b>N</b>). <span class="html-italic">Fgfr2</span> expression is mainly in the urethral epithelium (<b>O</b>,<b>P</b>). Abbrev: aer, apical ectodermal ridge; gt, genital tubercle; hl, hindlimb; mg, mammary gland; ue is the same as <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>. Scale bars: 500 µm.</p>
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<p>Spatiotemporal patterns of <span class="html-italic">Shh</span>, <span class="html-italic">Fgf10</span>, and <span class="html-italic">Fgfr2</span> expression during guinea pig external genital development. Whole-mount images are ventral (<b>A</b>–<b>C</b>,<b>F</b>–<b>H</b>,<b>L</b>–<b>N</b>) or dorsal (<b>D</b>,<b>E</b>) views of the developing external genitalia of guinea pigs (<b>E</b>,<b>G</b>) with the distal at the top, showing mRNA expression of <span class="html-italic">Shh</span> (<b>A</b>–<b>E</b>), <span class="html-italic">Fgf10</span> (<b>F</b>–<b>H</b>) and <span class="html-italic">Fgfr2</span> (<b>L</b>–<b>N</b>). Images in (<b>I</b>–<b>K</b>) are transverse sections of the developing penises of guinea pigs and mice, showing Fgf10 protein (in red; blue is Dapi) localization. Note that <span class="html-italic">Shh</span> mRNA is exclusively expressed in the urethral epithelium and prepuce during the later stages (<b>A</b>–<b>E</b>) of developing EG in guinea pigs. <span class="html-italic">Fgf10</span> mRNA and protein mainly localize in the urethral epithelium at early stages in the guinea pig genital tubercle (GT) (<b>F</b>–<b>I</b>) and also in the preputial lamina (ppl) in E38 penis (<b>J</b>) of guinea pigs. However, in mouse GT, Fgf10 protein mainly localizes in the mesenchyme. <span class="html-italic">Fgfr2</span> mRNA is mainly expressed in the urethral epithelium in guinea pig GT. Arrowheads in (<b>D</b>,<b>E</b>) point to the tiny <span class="html-italic">Shh</span> expression domain, while arrows in (<b>H</b>) indicate the <span class="html-italic">Fgf10</span> expression domain in labioscrotal swellings. Abbrev: ppl and ue are the same as in <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>. Scale bars in (<b>A</b>–<b>H</b>,<b>L</b>–<b>N</b>): 500 µm; in (<b>I</b>–<b>K</b>): 100 µm.</p>
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<p>Comparison of relative expression levels of key developmental genes between guinea pig (GP) and mouse genital tubercles (GTs). Images in (<b>A</b>–<b>H</b>) are GP and mouse hindlimb (<b>H</b>) buds (<b>A</b>–<b>D</b>) and GTs (<b>E</b>–<b>H</b>), showing developmental stage similarity. All limb buds are in a dorsal view with the anterior on the left, and all GTs are in a ventral view with the distal at the top. GT samples were cut from the level marked by dashed lines in (<b>E</b>–<b>H</b>) for RNA extraction and quantitative PCR analysis. Data in (<b>I</b>,<b>J</b>) are mean ± standard error, <span class="html-italic">n</span> = 5, ** <span class="html-italic">p</span> ≤ 0.01, *** <span class="html-italic">p</span> ≤ 0.001. Scale bars in (<b>A</b>–<b>H</b>): 500 µm.</p>
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<p>The effect of Shh and Fgf-10 proteins on urethral groove and preputial development. Images in (<b>A</b>–<b>L</b>) are ventral views of mouse (<b>A</b>–<b>F</b>) and guinea pig (<b>G</b>–<b>L</b>) genital tubercles (GTs) with the distal end at the top. Broken line in images (<b>D</b>–<b>F</b>) shows the edge of urethral groove. Note that Hedgehog or Fgf inhibitors induce urethral groove formation but inhibit preputial development in cultured GTs of mice; the most significant effect is seen in cultured GTs with both inhibitors (<b>D</b>–<b>F</b>). Shh or Fgf-10 protein induces the formation of preputial swellings in cultured GTs of guinea pigs, and the most obvious results were found in both protein-treated GTs (<b>J</b>–<b>L</b>). Abbrev: uo, urethral opening; gp, ps, ss, and up are the same as in <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>, ug is the same as in <a href="#cells-14-00348-f002" class="html-fig">Figure 2</a>. Scale bars: 500 µm.</p>
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<p>Conditional deletion of <span class="html-italic">Smo</span> and <span class="html-italic">Fgfr2</span> in mouse genital tubercle (GT) resulted in a fully opened urethral groove resembling a normal human and guinea pig developing penis. Images (<b>A</b>–<b>E</b>) are modified from published figures with permission. (<b>A</b>) Guinea pig E28 GT [<a href="#B5-cells-14-00348" class="html-bibr">5</a>]. (<b>B</b>) Human 9-week-old developing penis [<a href="#B44-cells-14-00348" class="html-bibr">44</a>]. (<b>C</b>,<b>D</b>) Mouse E15.5 normal male GT (<b>C</b>) and Msx2-rtTA;tetO-Cre;Smoc/c male GT (<b>D</b>) [<a href="#B41-cells-14-00348" class="html-bibr">41</a>]. (<b>E</b>) Mouse E15.5 Msx2cre Fgfr2 c/c male GT [<a href="#B16-cells-14-00348" class="html-bibr">16</a>]. Abbrev: gp, ps, ss and up are the same as in <a href="#cells-14-00348-f001" class="html-fig">Figure 1</a>, ug is the same as in <a href="#cells-14-00348-f002" class="html-fig">Figure 2</a>.</p>
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16 pages, 6502 KiB  
Article
Perceived Gaps in Oncologic Emergency Care for Patients with Cancer: A Qualitative Comparison of Emergency Medicine and Oncologist Physician Perspectives
by Monica K. Wattana, Moira Davenport, Jason J. Bischof, Angela B. Lindsay, Nicholas R. Pettit, Jazmin R. Menendez, Kelsey Harper, Demis N. Lipe and Aiham Qdaisat
Cancers 2025, 17(5), 828; https://doi.org/10.3390/cancers17050828 - 27 Feb 2025
Viewed by 194
Abstract
Objective: Providing high-quality, safe, and consistent care for patients with cancer in the emergency department (ED) poses unique challenges. To better understand these challenges, we surveyed oncologists and emergency medicine (EM) physicians across five institutions to identify key areas for improvement in oncologic [...] Read more.
Objective: Providing high-quality, safe, and consistent care for patients with cancer in the emergency department (ED) poses unique challenges. To better understand these challenges, we surveyed oncologists and emergency medicine (EM) physicians across five institutions to identify key areas for improvement in oncologic EM. Methods: In this multi-institutional, cross-sectional qualitative study, a semi-structured survey was administered to EM attending and resident physicians and medical and surgical oncologists across five institutions in 2023. We assessed the open-ended questionnaire responses using thematic analysis; codes were created and collated to generate initial themes. The themes were then reviewed according to specialty for coherence and non-repetition and finalized. Results: Of the 302 surveys accessed, 185 (61.3%) had complete responses. Three main domains of issues emerged: systems-based challenges, direct patient care-related issues, and knowledge gaps. The issues most frequently perceived by oncologist survey respondents were long delays in care (41%), variability in care (25%), and communication issues between the EM physician and oncologist (14%). The issues most frequently perceived by EM physician survey respondents were knowledge gaps in cancer therapeutics (40%) and in general oncologic emergencies (23%); physician comfort level (14%); the timing and/or location of initial discussions about goals of care (13%); and challenges with the follow-up process (12%). Conclusions: Incorporating an interdisciplinary approach to patient care in the ED, improved EM oncologic education, and the development of oncologic specialized EDs may enhance the quality, safety, and consistency of care for patients with cancer in the ED. Full article
(This article belongs to the Section Cancer Survivorship and Quality of Life)
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Figure 1

Figure 1
<p>Mind map for the perceived gaps in care for patients with cancer in the emergency department (ED). GOC, goal of care.</p>
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<p>Word cloud analysis of the frequency of codes for the issues identified regarding the care of patients with cancer in the emergency department (ED). (<b>A</b>) Issues perceived by emergency medicine physicians. (<b>B</b>) Issues perceived by oncologists. GOC, goal of care. Code size represents the relative frequency of these terms based on the responses.</p>
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17 pages, 595 KiB  
Article
Patterns of Open Innovation Between Industry and University: A Fuzzy Cluster Analysis Based on the Antecedents of Their Collaboration
by Marius Băban and Călin Florin Băban
Mathematics 2025, 13(5), 772; https://doi.org/10.3390/math13050772 - 26 Feb 2025
Viewed by 165
Abstract
Competing in a complex and interconnected environment, firms are increasingly employing open innovation to search for and collaborate with different partners for better performance. While universities are considered an important source of knowledge for industry, there has been limited literature that investigates patterns [...] Read more.
Competing in a complex and interconnected environment, firms are increasingly employing open innovation to search for and collaborate with different partners for better performance. While universities are considered an important source of knowledge for industry, there has been limited literature that investigates patterns of their collaboration in an open innovation context. Moreover, the influence of contextual characteristics such as size and industry classes on these patterns has also received little attention. Aiming to address these research gaps, a research framework was developed from the extant literature. Taking into account the main antecedents integrated into this framework, a fuzzy c-means clustering approach was employed to find a typology of open innovative firms in their collaboration with universities. Using the typical value of the fuzzifier factor of this algorithm equal to 2, three distinct clusters were identified with respect to these antecedents as low, insecure, and responsive open innovators. Then, an econometric model using a multinomial logistic regression was constructed to explore the influence of firms’ size and industry type on the identified patterns of such collaboration. Based on the marginal effects analysis, mixed evidence was found regarding the influence of the firm’s size on the identified clusters, while the impact of industry intensity was in line with other prior studies in the extant literature. The results of our study lead to some meaningful implications from both an empirical and managerial point of view that are discussed alongside with future research recommendations. Full article
(This article belongs to the Special Issue Business Analytics: Mining, Analysis, Optimization and Applications)
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<p>The investigation framework of this study (adapted from [<a href="#B12-mathematics-13-00772" class="html-bibr">12</a>], pp. 7–8).</p>
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<p>The distribution of the antecedent constructs within the three clusters.</p>
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15 pages, 1274 KiB  
Article
A Coaching-Based Training for Underrepresented Mentors in STEM
by Molly E. Tuck, Kaylee A. Palomino, Julie A. Bradley, Margaret Mohr-Schroeder and Luke H. Bradley
Educ. Sci. 2025, 15(3), 289; https://doi.org/10.3390/educsci15030289 - 26 Feb 2025
Viewed by 285
Abstract
As an approach, coaching-based models have been demonstrated to enhance student self-efficacy, improve grades, and increase retention and graduation rates. Coaching-based training models are also key in mentor development, focusing on open-ended questions and active listening to create supportive environments where mentees can [...] Read more.
As an approach, coaching-based models have been demonstrated to enhance student self-efficacy, improve grades, and increase retention and graduation rates. Coaching-based training models are also key in mentor development, focusing on open-ended questions and active listening to create supportive environments where mentees can independently find solutions. This approach not only builds mentors’ communication and leadership skills but also enhances their adaptability and problem-solving abilities. For underrepresented groups in STEM, such training positions mentors as knowledge facilitators, helping bridge gaps in mentorship experiences and bolstering confidence in their roles, thereby contributing to a more inclusive and effective learning ecosystem. This study investigates the impact of a coaching-based approach to near-peer mentor training within the UK START program, focusing on high school student participants. Interviews revealed significant benefits, including enhanced communication skills, particularly in asking open-ended questions and avoiding judgmental language. Mentors also reported improved composure in stressful situations, often utilizing techniques such as deep breathing to manage emotions during interactions with young campers. Additionally, participants experienced personal growth, seeing themselves as leaders and role models, which they attributed to the mentorship training. The role affirmed their confidence in their STEM knowledge and sparked interest in future mentorship roles. These findings suggest that structured coaching-based training can build a supportive environment, benefiting both mentors and mentees. Full article
(This article belongs to the Section STEM Education)
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<p>START student program pipeline (adapted from <a href="#B9-education-15-00289" class="html-bibr">L. H. Bradley et al., 2021</a>).</p>
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<p>Schedule of the 4-week START summer program.</p>
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<p>Appreciate coaching framework training emphasis.</p>
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