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14 pages, 51619 KiB  
Article
Current Harmonics Suppression of Six-Phase Permanent-Magnet Synchronous Motor Drives Using Back-Electromotive Force Harmonics Compensation
by Po-Sheng Huang, Cheng-Ting Tsai, Jonq-Chin Hwang, Cheng-Tsung Lin and Yu-Ting Lin
Energies 2024, 17(24), 6280; https://doi.org/10.3390/en17246280 - 12 Dec 2024
Viewed by 414
Abstract
This paper investigates a back-electromotive force (EMF) harmonic compensation strategy for six-phase permanent-magnet synchronous motors (PMSMs) to reduce current harmonics and improve system performance. Ideally, the back-EMF waveform should be perfectly sinusoidal. However, manufacturing imperfections such as suboptimal magnetic circuit design, uneven winding [...] Read more.
This paper investigates a back-electromotive force (EMF) harmonic compensation strategy for six-phase permanent-magnet synchronous motors (PMSMs) to reduce current harmonics and improve system performance. Ideally, the back-EMF waveform should be perfectly sinusoidal. However, manufacturing imperfections such as suboptimal magnetic circuit design, uneven winding distribution, and mechanical eccentricity introduce low-order spatial harmonics, particularly the 5th, 7th, 11th, and 13th orders, which distort the back-EMF, increase current harmonics, complicate control, and reduce efficiency. To address these issues, this study proposes a compensation strategy utilizing common-mode and differential-mode current control. By injecting the 6th and 12th harmonics into the decoupled voltage commands along the d-axis and q-axis, the strategy significantly reduces current harmonic distortion. Experimental validation was conducted using a TMS320F28386D microcontroller, which controlled dual inverters via PWM signals and processed real-time current feedback. Rotor position feedback was provided by a resolver to ensure precise and responsive motor control. At a rotational speed of 900 rpm, with a peak phase current Im of 200 A and an IGBT switching frequency of 10 kHz, the phase-a current total harmonic distortion (THD) was reduced from 11.86% (without compensation) to 6.83% (with compensation). This study focused on mitigating harmonics below the 14th order. The experimental results demonstrate that the proposed back-EMF harmonic compensation strategy effectively minimizes current THD, highlighting its potential for improving the performance and efficiency of multi-phase motor systems. Full article
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<p>Six-phase PMSM back-EMF measurement system block diagram.</p>
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<p>Phase-<span class="html-italic">a</span> and phase-<span class="html-italic">x</span> back-EMF measurement.</p>
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<p>The waveform of the measured and reconstructed phase-<span class="html-italic">a</span> and phase-<span class="html-italic">x</span> back-EMF: (<b>a</b>) phase-<span class="html-italic">a</span> and phase-<span class="html-italic">x</span> back-EMF waveform; (<b>b</b>) zoomed-in waveform.</p>
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<p>Six-phase PMSM common-mode and differential-mode current closed-loop control block.</p>
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<p>Simulated phase-<span class="html-italic">a</span> current waveform and harmonic histogram: (<b>a</b>) Without compensation. (<b>b</b>) With compensation.</p>
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<p>Histogram of the THD reduction in simulation result.</p>
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<p>Photos of the six-phase PMSM testbench: (<b>a</b>) Setup with the dynamometer driving the six-phase PMSM. (<b>b</b>) Six-phase PMSM drive system.</p>
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<p>Actual phase-<span class="html-italic">a</span> current waveform and harmonic histogram: (<b>a</b>) Without compensation. (<b>b</b>) With compensation.</p>
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<p>Histogram of the THD reduction in actual result.</p>
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14 pages, 4118 KiB  
Article
Differentiation of Soybean Genotypes Concerning Seed Physiological Quality Using Hyperspectral Bands
by Izabela Cristina de Oliveira, Dthenifer Cordeiro Santana, Victoria Toledo Romancini, Ana Carina da Silva Cândido Seron, Charline Zaratin Alves, Paulo Carteri Coradi, Carlos Antônio da Silva Júnior, Regimar Garcia dos Santos, Fábio Henrique Rojo Baio, Paulo Eduardo Teodoro and Larissa Ribeiro Teodoro
AgriEngineering 2024, 6(4), 4752-4765; https://doi.org/10.3390/agriengineering6040272 - 9 Dec 2024
Viewed by 392
Abstract
The use of summarized spectral data in bands obtained by hyperspectral sensors can make it possible to obtain biochemical information about seeds and, thus, relate the results to seed viability and vigor. Thus, the hypothesis of this work is based on the possibility [...] Read more.
The use of summarized spectral data in bands obtained by hyperspectral sensors can make it possible to obtain biochemical information about seeds and, thus, relate the results to seed viability and vigor. Thus, the hypothesis of this work is based on the possibility of obtaining information about the physiological quality of seeds through hyperspectral bands and distinguishing seed lots regarding their quality through wavelengths. The objective was then to evaluate the possibility of differentiating soybean genotypes regarding the physiological quality of seeds using spectral data. The experiment was conducted during the 2021/2022 harvest at the Federal University of Mato Grosso do Sul in a randomized block design with four replicates and 10 F3 soybean populations (G1, G8, G12, G15, G19, G21, G24, G27, G31, and G36). After the maturation of each genotype, seeds were harvested from the central rows of each plot, which consisted of five one-meter rows. Seed samples from each experimental unit were placed in a Petri dish to collect spectral data. Readings were performed in the laboratory at a temperature of 26 °C and using two 60 W halogen lamps as the light source, positioned 15 cm between the sensor and the sample. The sensor used was the Ocean Optics (Florida, USA) model STS-VIS-L-50-400-SMA, which captured the reflectance of the seed sample at wavelengths between 450 and 824 nm. After readings from the hyperspectral sensor, the seeds were subjected to tests for water content, germination, first germination count, electrical conductivity, and tetrazolium. The data obtained were subjected to an analysis of variance and the means were compared by the Scott–Knott test at 5% probability, analyzed using R software version 4.2.3 (Auckland, New Zealand). The data on the physiological quality of the seeds of the soybean genotypes were subjected to principal component analysis (PCA) and associated with the K-means algorithm to form groups according to the similarity and distinction between the genetic materials. After the formation of these groups, spectral curve graphs were constructed for each soybean genotype and for the groups that were formed. The physiological quality of the soybean genotypes can be differentiated using hyperspectral bands. The spectral bands, therefore, provide important information about the physiological quality of soybean seeds. Through the use of hyperspectral sensors and the observation of specific bands, it is possible to differentiate genotypes in terms of seed quality, complementing and/or replacing traditional tests in a fast, accurate, and non-destructive way, reducing the time and investment spent on obtaining information on seed viability and vigor. The results found in this study are promising, and further research is needed in future studies with other species and genotypes. The interval between 450 and 649 nm was the main spectrum band that contributed to the differentiation between soybean genotypes of superior and inferior physiological quality. Full article
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<p>Principal component analysis for the variables PCG (first germination count), GERM (germination), EC (electrical conductivity), vigor, and viability to form two groups (C1—group with superior seed physiological quality and C2—group with inferior seed physiological quality) based on the K-means algorithm.</p>
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<p>Reflectance of seeds from 10 soybean genotypes (<b>A</b>) and the clusters (<b>B</b>) formed based on principal component analysis and the K-means algorithm (C1—group with superior seed physiological quality and C2—group with inferior seed physiological quality).</p>
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<p>Principal component analysis for the variables PCG (first germination count), GERM (germination), EC (electrical conductivity), vigor, and viability, for bands B1 (450–475 nm), B2 (480 nm), B3 (481–500 nm), B4 (501–530 nm), B5 (531–539 nm), B6 (540 nm), B7 (541–649 nm), B8 (650 nm), B9 (661–670 nm), B10 (675 nm), B11 (676–684 nm), B12 (685–689 nm), B13 (690–700 nm), B14 (701–709 nm), B15 (710 nm), and B16 (711–730 nm) of 10 soybean genotypes to form two groups (C1—group with superior seed physiological quality and C2—group with inferior seed physiological quality) based on the K-means algorithm.</p>
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<p>Reflectance of the spectral bands of the seeds of 10 soybean genotypes (<b>A</b>) and the clusters (<b>B</b>) formed based on principal component analysis and the K-means algorithm (C1—group with superior seed physiological quality and C2—group with inferior seed physiological quality).</p>
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<p>Scatterplot for the variables PCG (first germination count), GERM (germination), EC (electrical conductivity), vigor, and viability, and bands B1 (450–475 nm), B2 (480 nm), B3 (481–500 nm), B4 (501–530 nm), B5 (531–539 nm), B6 (540 nm), B7 (541–649 nm), B8 (650 nm), B9 (661–670 nm), B10 (675 nm), B11 (676–684 nm), B12 (685–689 nm), B13 (690–700 nm), B14 (701–709 nm), B15 (710 nm), and B16 (711–730 nm) of 10 soybean genotypes. *, ** and ***: significant at 5, 1 and 0.01% respectively.</p>
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19 pages, 7261 KiB  
Article
Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes
by Rongbin Hu, Jin Zhang, Sara Jawdy, Avinash Sreedasyam, Anna Lipzen, Mei Wang, Vivian Ng, Christopher Daum, Keykhosrow Keymanesh, Degao Liu, Alex Hu, Jin-Gui Chen, Gerald A. Tuskan, Jeremy Schmutz and Xiaohan Yang
Plants 2024, 13(23), 3444; https://doi.org/10.3390/plants13233444 - 8 Dec 2024
Viewed by 517
Abstract
Temperature stress is one of the major limiting environmental factors that negatively impact global crop yields. Kalanchoë fedtschenkoi is an obligate crassulacean acid metabolism (CAM) plant species, exhibiting much higher water-use efficiency and tolerance to drought and heat stresses than C3 or [...] Read more.
Temperature stress is one of the major limiting environmental factors that negatively impact global crop yields. Kalanchoë fedtschenkoi is an obligate crassulacean acid metabolism (CAM) plant species, exhibiting much higher water-use efficiency and tolerance to drought and heat stresses than C3 or C4 plant species. Previous studies on gene expression responses to low- or high-temperature stress have been focused on C3 and C4 plants. There is a lack of information about the regulation of gene expression by low and high temperatures in CAM plants. To address this knowledge gap, we performed transcriptome sequencing (RNA-Seq) of leaf and root tissues of K. fedtschenkoi under cold (8 °C), normal (25 °C), and heat (37 °C) conditions at dawn (i.e., 2 h before the light period) and dusk (i.e., 2 h before the dark period). Our analysis revealed differentially expressed genes (DEGs) under cold or heat treatment in comparison to normal conditions in leaf or root tissue at each of the two time points. In particular, DEGs exhibiting either the same or opposite direction of expression change (either up-regulated or down-regulated) under cold and heat treatments were identified. In addition, we analyzed gene co-expression modules regulated by cold or heat treatment, and we performed in-depth analyses of expression regulation by temperature stresses for selected gene categories, including CAM-related genes, genes encoding heat shock factors and heat shock proteins, circadian rhythm genes, and stomatal movement genes. Our study highlights both the common and distinct molecular strategies employed by CAM and C3/C4 plants in adapting to extreme temperatures, providing new insights into the molecular mechanisms underlying temperature stress responses in CAM species. Full article
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<p>Identification of DEGs regulated by cold or heat stress treatments in <span class="html-italic">Kalanchoë fedtschenkoi</span>. (<b>a</b>) Volcano plots showing up- and down-regulated genes under cold or heat stress conditions in leaf tissue. (<b>b</b>) Volcano plots showing up- and down-regulated genes under cold or heat stress conditions in root tissue. (<b>c</b>) GO-enrichment analysis on BP for up- and down-regulated genes at dawn and dusk time points in leaf and root tissues. Detailed enrichment plots on biological process (BP), molecular function (MF), and cellular component (CC) are shown in <a href="#app1-plants-13-03444" class="html-app">Supplementary Figures S3–S6</a>. GO-slim terms are shown here.</p>
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<p>Analysis of DEGs regulated by cold and heat stress in <span class="html-italic">Kalanchoë fedtschenkoi</span>. (<b>a</b>) Venn diagrams show overlapped DEGs that are regulated by cold and heat stress treatments at dawn and dusk in leaf tissues. (<b>b</b>) Venn diagrams show overlapped DEGs that are regulated by cold and heat stress treatments at dawn and dusk in root tissues. (<b>c</b>) GO-enrichment analysis for up- and down-regulated genes that are shared between comparisons cold vs. ctrl and heat vs. ctrl at dawn and dusk time points in leaf and root tissues. Detailed enrichment plots on biological process (BP), molecular function (MF), and cellular component (CC) are shown in <a href="#app1-plants-13-03444" class="html-app">Supplementary Figures S3–S6</a>. GO-slim terms are shown here.</p>
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<p>Expression pattern of transcription factors that are oppositely regulated by cold and heat stress in leaf and root tissues at dawn and dusk time points. (<b>a</b>) Venn diagrams show overlapped DEGs that are oppositely regulated by cold and heat stress at dawn and dusk in leaf tissues. (<b>b</b>) Venn diagrams show overlapped DEGs that are oppositely regulated by cold and heat stress at dawn and dusk in root tissues. (<b>c</b>) Expression pattern of TFs that are oppositely regulated by cold and heat stress at dawn and dusk time points in leaf tissues. (<b>d</b>) Expression pattern of TFs that are oppositely regulated by cold and heat stress at dawn and dusk time points in root tissues. Z-score was used for normalization of gene transcript profiles and for generation of Heatmap figures.</p>
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<p>A weighted gene co-expression network analysis (WGCNA) of genes under cold and heat stress treatments in leaf and root tissues of <span class="html-italic">Kalanchoë fedtschenkoi</span>. Cluster dendrogram was constructed and different colors were labelled for various expression modules (MEs). Z-score normalization was employed for plot generation.</p>
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<p>Expression pattern of CAM core genes in response to temperature stresses (cold and heat) at different time points. Z-score was used for normalization of gene transcript profiles and for generation of Heatmap figure. <span class="html-italic">β-CA</span>, <span class="html-italic">β</span> type carbonic anhydrase; <span class="html-italic">PEPC</span>, phosphoenolpyruvate carboxylase; <span class="html-italic">PPCK</span>, PEPC kinase; <span class="html-italic">MDH</span>, malate dehydrogenase; <span class="html-italic">ALMT,</span> tonoplast aluminum-activated malate transporter; <span class="html-italic">TDT</span>, tonoplast dicarboxylate transporter; <span class="html-italic">PPDK</span>, pyruvate phosphate dikinase; <span class="html-italic">PPDK-RP</span>, PPDK regulatory protein; <span class="html-italic">NAD(P)-ME</span>, NAD(P)<sup>+</sup>-dependent malic enzyme. Dawn, 2 h before the start of light period; dusk, 2 h before the dark period; Ct, regular growth temperature used as control.</p>
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<p>Expression pattern of heat shock factors (HSFs) that are regulated by cold and heat stress in <span class="html-italic">Kalanchoë fedtschenkoi</span>. (<b>a</b>) Transcript profiles of HSFs regulated by both cold and heat stress in leaf tissues. (<b>b</b>) Transcript profiles of HSFs regulated by both cold and heat stress in root tissues. Z-score was used for normalization of gene transcript profiles and for generation of Heatmap figure.</p>
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<p>A schematic diagram showing pathways responsive to cold and heat stress in plants. Red color indicates the genes identified in this study. CCA1, Circadian Clock Associated 1; LHY, late elongated hypocotyl; RVE4/8, Reveille 4/8; COR314-TM2, cold-regulated 314 thylakoid membrane 2; APX1/2, ascorbate peroxidase 1/2; SOD2, superoxide dismutase 2; CAT1/2, catalase 1/2; HsfA1/A2/A3, heat shock factor A1/A2/A3; DREB2A, dehydration-responsive element binding protein 2; ROS, reactive oxygen species.</p>
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24 pages, 9848 KiB  
Article
Toluene Alkylation Reactions over Y-Type Zeolite Catalysts: An Experimental and Kinetic Study
by Samaa H. Al-Sultani, Ali Al-Shathr and Bashir Y. Al-Zaidi
Reactions 2024, 5(4), 1042-1065; https://doi.org/10.3390/reactions5040055 - 6 Dec 2024
Viewed by 482
Abstract
The present study demonstrated an improvement in both 1-heptene conversion and mono-heptyltoluene selectivity. It simultaneously depicted the isomerization reactions of 1-heptene and toluene alkylation over Y zeolite catalysts having a Si/Al of 3.5 and a surface area of 817 m2/g. The [...] Read more.
The present study demonstrated an improvement in both 1-heptene conversion and mono-heptyltoluene selectivity. It simultaneously depicted the isomerization reactions of 1-heptene and toluene alkylation over Y zeolite catalysts having a Si/Al of 3.5 and a surface area of 817 m2/g. The physical properties of the fresh zeolite catalyst were characterized using XRD, FTIR, XRF, TPD, and N2 adsorption–desorption spectroscopy. The experimental part was carried out in a 100 mL glass flask connected to a reflux condenser at different reaction temperatures ranging from 70 to 90 °C, toluene:1-heptene ratios of 3–8, and catalyst weights of 0.25–0.4 g. The highest conversion of ~96% was obtained at the highest toluene:1-heptene ratio (i.e., 8:1), 0.25 g of zeolite Y, at 180 min of reaction time and under a reaction temperature of 90 °C. However, the selectivity of 2-heptyltoluene reached its highest value of ~25% under these conditions. Likewise, the kinetic modeling developed in this study helped describe the proposed reaction mechanism by linking the experimental results with the predicted results. The kinetic parameters were determined by nonlinear regression analysis using the MATLAB® package genetic algorithm. The ordinary differential equations were integrated with respect to time using the fourth-order Runge–Kutta method, and the resulting mole fractions were fitted against the experimental data. The mean relative error (MRE) values were calculated from the experimental and predicted results, which showed a reasonable agreement with the average MRE being ~11.7%. The calculated activation energies showed that the reaction rate follows the following order: coking (55.9–362.7 kJ/mol) > alkylation (73.1–332.1 kJ/mol) > isomerization (69.3–120.2 kJ/mol), indicating that isomerization reactions are the fastest compared to other reactions. A residual activity deactivation model was developed to measure the deactivation kinetic parameters, and the deactivation energy value obtained was about 48.2 kJ/mol. Full article
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<p>Schematic of the batch reactor.</p>
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<p>XRD pattern of the Y zeolite.</p>
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<p>FTIR spectra of the Y zeolite.</p>
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<p>(<b>a</b>) N<sub>2</sub> sorption isotherms and (<b>b</b>) pore-size distribution according to the Horvath–Kowazoe method of the Y zeolite catalyst.</p>
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<p>NH<sub>3</sub>-TPD profile of the Y zeolite catalyst.</p>
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<p>Influence of (<b>a</b>) temperature, (<b>b</b>) toluene:1-heptene ratio, and (<b>c</b>) weight of the catalyst on the conversion of 1-heptene at a constant reaction time of 180 min.</p>
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<p>Influence of reaction temperature (<b>a</b>) 70 °C, (<b>b</b>) 80 °C, and (<b>c</b>) 90 °C on the selectivity of heptyltoluene and heptene isomers at a constant reaction time of 180 min, with a toluene to 1-heptene ratio of 3 and 0.25 g of zeolite catalyst.</p>
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<p>Influence of toluene:1-heptene ratio (<b>a</b>) 3:1, (<b>b</b>) 5:1, and (<b>c</b>) 8:1 on the selectivity of heptyltoluene and hyptene isomers at a constant reaction time of 180 min, reaction temperature 90 °C, and 0.25 g of the zeolite catalyst.</p>
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<p>Influence of catalyst weight (<b>a</b>) 0.25 g and (<b>b</b>) 0.4 g on the selectivity of heptyltoluene and hyptene isomers at a constant reaction time of 180 min.</p>
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<p>Effect of catalyst deactivation on the conversion of 1-heptene under the same reaction conditions: (a) The first experiment included fresh HY zeolite catalyst with new feedstock, (b) the second experiment included the catalyst separated at the end of the first experiment without reactivation with new feedstock, and (c) the third experiment included fresh HY zeolite catalyst with a mixture of unreacted materials obtained at the end of the second experiment.</p>
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<p>Comparison between experimental and predicted (<b>a</b>) 1-heptene, (<b>b</b>) 2-heptene, (<b>c</b>) 3-heptene, (<b>d</b>) 3-heptyltolene, and (<b>e</b>) 3-heptyltolene concentrations.</p>
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<p>Comparison between experimental and predicted (<b>a</b>) 1-heptene, (<b>b</b>) 2-heptene, (<b>c</b>) 3-heptene, (<b>d</b>) 3-heptyltolene, and (<b>e</b>) 3-heptyltolene concentrations.</p>
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<p>Comparison between experimental and predicted (<b>a</b>) 1-heptene, (<b>b</b>) 2-heptene, (<b>c</b>) 3-heptene, (<b>d</b>) 3-heptyltolene, and (<b>e</b>) 3-heptyltolene concentrations.</p>
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<p>Mean relative error for the experiments.</p>
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<p>Comparison between experimental and predicted (<b>a</b>) 1-heptene, (<b>b</b>) 2-heptene, (<b>c</b>) 3-heptene, (<b>d</b>) 2-heptyltoluene, (<b>e</b>) 3-heptyltoluene concentration response with time at 90 °C, 0.25 g of zeolite Y, toluene:1-heptene ratio of 3 and reaction time of 180 min.</p>
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<p>Comparison between experimental and predicted (<b>a</b>) 1-heptene, (<b>b</b>) 2-heptene, (<b>c</b>) 3-heptene, (<b>d</b>) 2-heptyltoluene, (<b>e</b>) 3-heptyltoluene concentration response with time at 90 °C, 0.25 g of zeolite Y, toluene:1-heptene ratio of 3 and reaction time of 180 min.</p>
Full article ">Figure 13 Cont.
<p>Comparison between experimental and predicted (<b>a</b>) 1-heptene, (<b>b</b>) 2-heptene, (<b>c</b>) 3-heptene, (<b>d</b>) 2-heptyltoluene, (<b>e</b>) 3-heptyltoluene concentration response with time at 90 °C, 0.25 g of zeolite Y, toluene:1-heptene ratio of 3 and reaction time of 180 min.</p>
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<p>Formation steps of mono-heptyltoluene [<a href="#B31-reactions-05-00055" class="html-bibr">31</a>].</p>
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<p>Primary steps involved in toluene alkylation with 1-heptene over zeolite catalyst.</p>
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19 pages, 6151 KiB  
Article
Transcriptomic and Metabolomic Analyses of the Piz-t-Mediated Resistance in Rice against Magnaporthe oryzae
by Naeyeoung Choi, Xiao Xu, Pengfei Bai, Yanfang Liu, Shaoxing Dai, Matthew Bernier, Yun Lin, Yuese Ning, Joshua J. Blakeslee and Guo-Liang Wang
Plants 2024, 13(23), 3408; https://doi.org/10.3390/plants13233408 - 4 Dec 2024
Viewed by 602
Abstract
Magnaporthe oryzae causes devastating rice blast disease, significantly impacting rice production in many countries. Among the many known resistance (R) genes, Piz-t confers broad-spectrum resistance to M. oryzae isolates and encodes a nucleotide-binding site leucine-rich repeat receptor (NLR). Although Piz-t-interacting proteins and those [...] Read more.
Magnaporthe oryzae causes devastating rice blast disease, significantly impacting rice production in many countries. Among the many known resistance (R) genes, Piz-t confers broad-spectrum resistance to M. oryzae isolates and encodes a nucleotide-binding site leucine-rich repeat receptor (NLR). Although Piz-t-interacting proteins and those in the signal transduction pathway have been identified over the last decade, the Piz-t-mediated resistance has not been fully understood at the transcriptomic and metabolomic levels. In this study, we performed transcriptomic and metabolomic analyses in the Piz-t plants after inoculation with M. oryzae. The transcriptomic analysis identified a total of 15,571 differentially expressed genes (DEGs) from infected Piz-t and wild-type plants, with 2791 being Piz-t-specific. K-means clustering, GO term analysis, and KEGG enrichment pathway analyses of the total DEGs identified five groups of DEGs with distinct gene expression patterns at different time points post inoculation. GO term analysis of the 2791 Piz-t-specific DEGs revealed that pathways related to DNA organization, gene expression regulation, and cell division were highly enriched in the group, especially at early infection stages. The gene expression patterns in the transcriptomic datasets were well correlated with the metabolomic profiling. Broad-spectrum “pathway-level” metabolomic analyses indicated that terpenoid, phenylpropanoid, flavonoid, fatty acid, amino acid, glycolysis/TCA, and phenylalanine pathways were altered in the Piz-t plants after M. oryzae infection. This study offers new insights into the molecular dynamics of transcripts and metabolites in R-gene-mediated resistance against M. oryzae and provides candidates for enhancing rice blast resistance through the engineering of metabolic pathways. Full article
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<p>Transcriptome profiling of the <span class="html-italic">Piz-t</span>-mediated resistance. (<b>A</b>) Rice plants (NPB and NPB-Piz-t) were sprayed with <span class="html-italic">Magnaporthe oryzae</span> strain RO1-1. Sampling was collected at 0, 24, 48, 96 and 120 h post inoculation (hpi). (<b>B</b>) Venn diagram showing the combined number of differentially expressed genes (DEGs) identified in NPB and NPB-Piz-t groups at all time points. The 0 hpi time point from each group was used as the reference for normalization. (<b>C</b>) Heatmap displaying the expression profiles of DEGs in both NPB and NPB-Piz-t groups across the different time points. The color scale from blue to red represents low- to high-expression levels. The hierarchical clustering reveals distinct gene expression patterns in response to <span class="html-italic">M. oryzae</span> infection. (<b>D</b>) Line graphs illustrating the expression patterns of representative gene clusters from the heatmap. Each panel represents the mean expression levels of a specific gene set (clusters 01 to 05) across the sampled time points. Error bars indicate the standard error of the mean (SEM). Significant differences between the groups are marked with asterisks (** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>GO term analysis of gene clusters identified in the transcriptome data. A-C GO enrichment analysis for the clustered gene sets from cluster 2, cluster 3 and cluster 4 in <a href="#plants-13-03408-f001" class="html-fig">Figure 1</a>D, highlighting significantly enriched biological processes. Each panel shows the top enriched GO terms for a specific gene cluster, with fold enrichment &gt;= 2.0 and false discovery rate (FDR) &lt; 0.05. The size of the circles represents the fold enrichment, and the color indicates the FDR. (<b>A</b>). GO term enrichment of cluster 2. (<b>B</b>). GO term enrichment of cluster 3. (<b>C</b>). GO term enrichment of cluster 4.</p>
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<p>KEGG pathway analysis of the identified DEGs. A-D KEGG pathway enrichment analysis at different time points. The bar chart shows the gene ratio for each significantly enriched pathway, including metabolic pathways, biosynthesis of secondary metabolites, phenylpropanoid biosynthesis and plant hormone signal transduction. The size of the dots represents the gene count, and the color indicates the <span class="html-italic">p</span>-value, with red indicating higher significance. (<b>A</b>). KEGG enrichment of 24 hpi. (<b>B</b>). KEGG enrichment of 48 hpi. (<b>C</b>). KEGG enrichment of 96 hpi. (<b>D</b>). KEGG enrichment of 120 hpi.</p>
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<p>GO term analysis of 2791-<span class="html-italic">Piz-t</span> specific DEGs. Top 20 GO terms from each timepoint were plotted together. The size of the dots represents the gene count, and the color indicates the <span class="html-italic">p</span>-value, with red indicating higher significance functions related to DNA organization and gene expression regulation are important for <span class="html-italic">Piz-t</span>-mediated resistance.</p>
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<p>Metabolomic analysis of the <span class="html-italic">Piz-t-</span>mediated resistance after <span class="html-italic">M. oryzae</span> infection. (<b>A</b>,<b>C</b>,<b>E</b>). Volcano plot of the metabolites showing altered expression patterns in NPB-Piz-t in comparison with NPB. A total of 347, 137 and 423 metabolites showed increased expression at 0, 48 and 96 hpi after RO1-1 inoculation in NPB-Piz-t, while 441, 124 and 461 metabolites showed decreased expression patterns at 0, 48 and 96 hpi after RO1-1 inoculation in NPB-Piz-t. (<b>B</b>,<b>D</b>,<b>F</b>). Heatmaps of differentially accumulated metabolites in 0, 48 and 96 hpi after RO1-1 inoculation in NPB-Piz-t, with <span class="html-italic">p</span> values &lt; 0.05.</p>
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<p>The number of metabolites in different biological pathways that were up- and down-regulated in <span class="html-italic">NPB-Piz-t</span> compared with NPB after inoculation. (<b>A</b>,<b>C</b>,<b>E</b>). The number of metabolites being up-regulated in <span class="html-italic">NPB-Piz-t</span> vs. NPB after inoculation of RO1-1. (<b>B</b>,<b>D</b>,<b>F</b>). The number of metabolites being down-regulated in <span class="html-italic">NPB-Piz-t</span> vs. NPB after inoculation of RO1-1.</p>
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12 pages, 1638 KiB  
Article
Smartphone-Based Pupillometry Using Machine Learning for the Diagnosis of Sports-Related Concussion
by Anthony J. Maxin, Bridget M. Whelan, Michael R. Levitt, Lynn B. McGrath and Kimberly G. Harmon
Diagnostics 2024, 14(23), 2723; https://doi.org/10.3390/diagnostics14232723 - 3 Dec 2024
Viewed by 567
Abstract
Background: Quantitative pupillometry has been proposed as an objective means to diagnose acute sports-related concussion (SRC). Objective: To assess the diagnostic accuracy of a smartphone-based quantitative pupillometer in the acute diagnosis of SRC. Methods: Division I college football players had baseline pupillometry including [...] Read more.
Background: Quantitative pupillometry has been proposed as an objective means to diagnose acute sports-related concussion (SRC). Objective: To assess the diagnostic accuracy of a smartphone-based quantitative pupillometer in the acute diagnosis of SRC. Methods: Division I college football players had baseline pupillometry including pupillary light reflex (PLR) parameters of maximum resting diameter, minimum diameter after light stimulus, percent change in pupil diameter, latency of pupil constriction onset, mean constriction velocity, maximum constriction velocity, and mean dilation velocity using a smartphone-based app. When an SRC occurred, athletes had the smartphone pupillometry repeated as part of their concussion testing. All combinations of the seven PLR parameters were tested in machine learning binary classification models to determine the optimal combination for differentiating between non-concussed and concussed athletes. Results: 93 football athletes underwent baseline pupillometry testing. Among these athletes, 11 suffered future SRC and had pupillometry recordings repeated at the time of diagnosis. In the machine learning pupillometry analysis that used the synthetic minority oversampling technique to account for the significant class imbalance in our dataset, the best-performing model was a random forest algorithm with the combination of latency, maximum diameter, minimum diameter, mean constriction velocity, and maximum constriction velocity PLR parameters as feature inputs. This model produced 91% overall accuracy, 98% sensitivity, 84.2% specificity, area under the curve (AUC) of 0.91, and an F1 score of 91.6% in differentiating between baseline and SRC recordings. In the machine learning analysis prior to oversampling of our imbalanced dataset, the best-performing model was k-nearest neighbors using latency, maximum diameter, maximum constriction velocity, and mean dilation velocity to produce 82% accuracy, 40% sensitivity, 87% specificity, AUC of 0.64, and F1 score of 24%. Conclusions: Smartphone pupillometry in combination with machine learning may provide fast and objective SRC diagnosis in football athletes. Full article
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Figure 1
<p>Demonstration of use of the box apparatus. The smartphone inserts into the box from the side (Mariakakis et al. [<a href="#B30-diagnostics-14-02723" class="html-bibr">30</a>]).</p>
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<p>Double histograms of raw data for each pupillary light reflex parameter.</p>
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<p>Three-D scatter plots comparing raw data from different combinations of three out of the four PLR parameters in the best-performing model without SMOTE. Views have been adjusted to give the best appearance of potential areas of differentiation between concussed and baseline recordings in our dataset.</p>
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22 pages, 21012 KiB  
Article
Comprehensive Genome-Wide Identification and Expression Profiling of bHLH Transcription Factors in Areca catechu Under Abiotic Stress
by Akhtar Ali, Noor Muhammad Khan, Yiqi Jiang, Guangzhen Zhou and Yinglang Wan
Int. J. Mol. Sci. 2024, 25(23), 12936; https://doi.org/10.3390/ijms252312936 - 1 Dec 2024
Viewed by 778
Abstract
The basic helix-loop-helix (bHLH) transcription factor (TF) family, the second-largest among eukaryotes, is known for its evolutionary and functional diversity across plant species. However, bHLH genes have not yet been characterized in Areca catechu. In this study, we identified 76 [...] Read more.
The basic helix-loop-helix (bHLH) transcription factor (TF) family, the second-largest among eukaryotes, is known for its evolutionary and functional diversity across plant species. However, bHLH genes have not yet been characterized in Areca catechu. In this study, we identified 76 AcbHLH genes, which exhibit a variety of physicochemical properties. Phylogenetic analysis revealed evolutionary relationships between Arabidopsis thaliana bHLH genes (AtbHLH) and their counterparts in A. catechu (AcbHLH). These analyses also highlighted conserved amino acid motifs (S, R, K, P, L, A, G, and D), conserved domains, and evolutionary changes, such as insertions, deletions, and exon gains or losses. Promoter analysis of AcbHLH genes revealed 76 cis-elements related to growth, phytohormones, light, and stress. Gene duplication analysis revealed four tandem duplications and twenty-three segmental duplications, while AcbHLH63 in the Areca genome exhibited significant synteny with bHLH genes from A. thaliana, Vitis vinifera, Solanum lycopersicum, Brachypodium distachyon, Oryza sativa, and Zea mays. Furthermore, relative expression analysis showed that under drought stress (DS), AcbHLH22, AcbHLH39, AcbHLH45, and AcbHLH58 showed distinct upregulation in leaves at specific time points, while all nine AcbHLH genes were upregulated in roots. Under salt stress (SS), AcbHLH22, AcbHLH39, AcbHLH45, and AcbHLH58 were upregulated in leaves, and AcbHLH22, AcbHLH34, and AcbHLH39 exhibited differential expression in roots at various time points. This study provides valuable insights into the bHLH superfamily in A. catechu, offering a solid foundation for further investigation into its role in responding to abiotic stresses. Full article
(This article belongs to the Special Issue Genetic Engineering of Plants for Stress Tolerance)
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Figure 1
<p>A phylogenic tree illustrates the relationship among <span class="html-italic">bHLH</span> domains of <span class="html-italic">A. catechu</span> and <span class="html-italic">A. thaliana</span>. The black color presents (<span class="html-italic">AtbHLH</span>) <span class="html-italic">A. thaliana</span>, and red represents <span class="html-italic">AcbHLH</span> of <span class="html-italic">A. catechu bHLH</span> protein.</p>
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<p>Multiple sequence alignments of <span class="html-italic">A. catechu</span> and 24 subgroups <span class="html-italic">A. thaliana. A. catechu</span> is devoid of subgroup 24. The location and boundaries of the bHLH domain are indicated at the top of each subgroup.</p>
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<p>Comparative analysis of <span class="html-italic">A. catechu AcbHLH</span> gene phylogeny, structure, and motifs. (<b>A</b>) Phylogeny was inferred based on the NJ method with 1000 bootstrap replicates. (<b>B</b>) Introns and exons are visually represented as yellow and black lines. (<b>C</b>) Amino acid motifs (1–10) are indicated by colored, relative protein lengths represented with black lines.</p>
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<p>(<b>A</b>) Cis-regulatory elements in the 2000 bp upstream region of <span class="html-italic">AcbHLH</span> gene promoters. (<b>B</b>) Distribution of cis—regulatory elements of <span class="html-italic">AcbHLH</span> gene members. Colored rectangles visually depict the various cis-acting elements.</p>
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<p>(<b>A</b>) Location of 76 <span class="html-italic">AcbHLH</span> genes across 16 <span class="html-italic">A. catechu</span> chromosomes. The left-hand scale indicates chromosomal length. (<b>B</b>) The schematic diagram represents the distribution of <span class="html-italic">A. catechu</span> chromosomes and interchromosomal interaction. Distinct colored lines within the diagram represent gene pairs. Red lines indicate <span class="html-italic">AcbHLH</span> gene pairs. <span class="html-italic">A. catechu</span> are labeled outside the chromosome circles, while chromosome numbers are indicated within.</p>
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<p>Gene <span class="html-italic">AcbHLH</span> duplication events. (<b>A</b>) Length distribution of <span class="html-italic">AcbHLHs</span> across five duplication events. (<b>B</b>–<b>F</b>) distribution of Ka, Ks, and Ka/Ks value in duplicated genes across five duplication events. (<b>B</b>–<b>F</b>) DSD, WGD, TRD, TD and PD event, respectively. Further details on the duplicated genes across the five duplication events are provided in <a href="#app1-ijms-25-12936" class="html-app">Table S9</a>.</p>
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<p>(<b>A</b>–<b>G</b>) Comparative synteny analysis of <span class="html-italic">AcbHLH</span> genes between <span class="html-italic">A. catechu</span> and six representative plant species (<span class="html-italic">A. thaliana</span>, <span class="html-italic">V. vinifera</span>, <span class="html-italic">S. lycopersicum</span>, <span class="html-italic">B. distachyon</span>, <span class="html-italic">O. sativa</span> sub sp. <span class="html-italic">indica</span>, <span class="html-italic">Z. mays</span> and <span class="html-italic">C. nucifera</span>). Gray lines show conserved syntenic blocks between <span class="html-italic">A. catechu</span> and other plant genomes. Red lines indicate that <span class="html-italic">AcbHLH</span> pairs of genes are syntenic across species.</p>
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<p>Heatmap of <span class="html-italic">AcbHLH</span> gene expression in <span class="html-italic">A. catechu</span> during salt stress (SS) (<b>A</b>) and drought stress (DS) (<b>B</b>). Red indicates larger log2FPKM values, whereas blue indicates lower values.</p>
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<p>(<b>A</b>) The presentation of phenotypic changes observed on Day 1 and Day 28 of abiotic stress. (<b>B</b>) The physiological changes observed on Day 1 and Day 28 under abiotic stress (salt and drought): (a) plant height, (b) plant fresh weight, and (c) plant dry weight for CK, SS, and DS groups. Different lowercase letters represent the significant statistical level <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>(<b>A</b>–<b>D</b>) The effects of abiotic stress (NaCl and PEG) detected by qRT-PCR on the expression of nine <span class="html-italic">AcbHLH</span> genes in roots and leaves of young <span class="html-italic">A. catechu</span> seedlings (0, 7, 14, 21, and 28 h) (<span class="html-italic">p</span> &lt; 0.05). (<b>E</b>) Heatmap of nine <span class="html-italic">AcbHLH</span> genes. Different letters indicate statistically significant group differences (<span class="html-italic">p</span> &lt; 0.05, LSD).</p>
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22 pages, 1001 KiB  
Article
Complex Dynamics and PID Control Strategies for a Fractional Three-Population Model
by Yan Zhou, Zhuang Cui and Ruimei Li
Mathematics 2024, 12(23), 3793; https://doi.org/10.3390/math12233793 - 30 Nov 2024
Viewed by 395
Abstract
In recent decades, there have been many studies on Hopf bifurcation and population stability with time delay. However, the stability and Hopf bifurcation of fractional-order population systems with time delay are lower. In this paper, we discuss the dynamic behavior of a fractional-order [...] Read more.
In recent decades, there have been many studies on Hopf bifurcation and population stability with time delay. However, the stability and Hopf bifurcation of fractional-order population systems with time delay are lower. In this paper, we discuss the dynamic behavior of a fractional-order three-population model with pregnancy delay using Laplace transform of fractional differential equations, stability and bifurcation theory, and MATLAB software. The specific conditions of local asymptotic stability and Hopf bifurcation for fractional-order time-delay systems are determined. A fractional-order proportional–integral–derivative (PID) controller is applied to the three-population food chain system for the first time. The convergent speed and vibration amplitude of the system can be changed by PID control. For example, after fixing the values of the integral control gain ki and the differential control gain kd, the amplitude of the system decreases and the convergence speed changes as the proportional control gain kp decreases. The effectiveness of the PID control strategy in complex ecosystem is proved. The numerical simulation results are in good agreement with the theoretical analysis. The research in this paper has potential application values concerning the management of complex population systems. The bifurcation theory of fractional-order time-delay systems is also enriched. Full article
(This article belongs to the Special Issue Recent Advances in Complex Dynamics in Non-Smooth Systems)
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Figure 1
<p>Stability region of Fractional System (5) with <math display="inline"><semantics> <mrow> <mn>0</mn> <mo>&lt;</mo> <mi>ε</mi> <mo>≤</mo> <mn>1</mn> </mrow> </semantics></math>.</p>
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<p>The time series (<b>a</b>–<b>c</b>) and phase diagram (<b>d</b>) for System (12) when <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.9</mn> </mrow> </semantics></math>, and <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.8</mn> </mrow> </semantics></math>, where <math display="inline"><semantics> <mrow> <msub> <mi>e</mi> <mn>2</mn> </msub> <mo>=</mo> <mn>1.4</mn> </mrow> </semantics></math>. Other parameters are the same as in (46).</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) for System (12) when the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.9</mn> </mrow> </semantics></math>. System (12) is locally asymptotically stable at the equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.2434</mn> <mo>)</mo> </mrow> </mrow> </semantics></math>. Other parameters are the same as in (46).</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.2434</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> result in periodic oscillations for System (12) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.95</mn> </mrow> </semantics></math>. Other parameters are same as in (46).</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.0228</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> are locally asymptotically stable for System (11) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.99</mn> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>τ</mi> <mo>=</mo> <mn>1.5</mn> <mo>&lt;</mo> <msub> <mi>τ</mi> <mn>0</mn> </msub> </mrow> </semantics></math>.</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.0228</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> are locally asymptotically stable for System (11) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.99</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>τ</mi> <mo>=</mo> <mn>2.5</mn> <mo>&gt;</mo> <msub> <mi>τ</mi> <mn>0</mn> </msub> </mrow> </semantics></math>.</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.2434</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> are locally asymptotically stable for System (11) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.9</mn> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>τ</mi> <mo>=</mo> <mn>1.1</mn> <mo>&lt;</mo> <msub> <mi>τ</mi> <mn>0</mn> </msub> </mrow> </semantics></math>.</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.2434</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> are locally asymptotically stable for System (11) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.9</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>τ</mi> <mo>=</mo> <mn>1.5</mn> <mo>&gt;</mo> <msub> <mi>τ</mi> <mn>0</mn> </msub> </mrow> </semantics></math>.</p>
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<p>Relation of fractional-order <math display="inline"><semantics> <mi>α</mi> </semantics></math> to <math display="inline"><semantics> <msub> <mi>τ</mi> <mn>0</mn> </msub> </semantics></math>.</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.2434</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> are locally asymptotically stable for Control System (43) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>v</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>w</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.95</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>d</mi> </msub> <mo>=</mo> <mn>0.2</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>i</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>0.2</mn> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>p</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>0.2</mn> </mrow> </semantics></math>.</p>
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<p>The time series (<b>a</b>) and phase diagram (<b>b</b>) of the interior equilibrium point <math display="inline"><semantics> <mrow> <msub> <mi>E</mi> <mn>3</mn> </msub> <mrow> <mo>(</mo> <mn>0.7628</mn> <mo>,</mo> <mn>0.125</mn> <mo>,</mo> <mn>5.2434</mn> <mo>)</mo> </mrow> </mrow> </semantics></math> are locally asymptotically stable for the Control System (43) with the initial value <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>x</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>y</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>z</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>v</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>,</mo> <mi>w</mi> <mo>(</mo> <mn>0</mn> <mo>)</mo> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>0.7</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>,</mo> <mn>0.1</mn> <mo>,</mo> <mn>6</mn> <mo>)</mo> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.95</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>d</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>0.2</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>i</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>0.2</mn> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>p</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>0.2</mn> </mrow> </semantics></math>.</p>
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<p>The time series (<b>a</b>–<b>c</b>) of controlled System (43) with <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.95</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>d</mi> </msub> <mo>=</mo> <msub> <mi>k</mi> <mi>i</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>0.2</mn> </mrow> </semantics></math> and different values of <math display="inline"><semantics> <msub> <mi>k</mi> <mi>p</mi> </msub> </semantics></math>.</p>
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<p>The time series (<b>a</b>–<b>c</b>) of controlled System (43) with <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.95</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>d</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>2</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>p</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>2</mn> </mrow> </semantics></math>, and different values of <math display="inline"><semantics> <msub> <mi>k</mi> <mi>i</mi> </msub> </semantics></math>.</p>
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<p>The time series (<b>a</b>–<b>c</b>) of controlled System (43) with <math display="inline"><semantics> <mrow> <mi>ε</mi> <mo>=</mo> <mn>0.95</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>k</mi> <mi>p</mi> </msub> <mo>=</mo> <mo>−</mo> <mn>2</mn> <mo>,</mo> <msub> <mi>k</mi> <mi>i</mi> </msub> <mo>=</mo> <mn>0</mn> </mrow> </semantics></math> and different values of <math display="inline"><semantics> <msub> <mi>k</mi> <mi>d</mi> </msub> </semantics></math>.</p>
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9 pages, 1337 KiB  
Article
Tryptanthrin Down-Regulates Oncostatin M by Targeting GM-CSF-Mediated PI3K-AKT-NF-κB Axis
by Na-Ra Han, Hi-Joon Park, Seong-Gyu Ko and Phil-Dong Moon
Nutrients 2024, 16(23), 4109; https://doi.org/10.3390/nu16234109 - 28 Nov 2024
Viewed by 471
Abstract
Background: Oncostatin M (OSM) is involved in several inflammatory responses. Tryptanthrin (TRYP), as a natural alkaloid, is a bioactive compound derived from indigo plants. Objectives/ Methods: The purpose of this study is to investigate the potential inhibitory activity of TRYP on OSM release [...] Read more.
Background: Oncostatin M (OSM) is involved in several inflammatory responses. Tryptanthrin (TRYP), as a natural alkaloid, is a bioactive compound derived from indigo plants. Objectives/ Methods: The purpose of this study is to investigate the potential inhibitory activity of TRYP on OSM release from neutrophils using neutrophils-like differentiated (d)HL-60 cells and neutrophils from mouse bone marrow. Results: The results showed that TRYP reduced the production and mRNA expression levels of OSM in the granulocyte–macrophage colony-stimulating factor (GM-CSF)-stimulated neutrophils-like dHL-60 cells. In addition, TRYP decreased the OSM production levels in the GM-CSF-stimulated neutrophils from mouse bone marrow. TRYP inhibited the phosphorylation of phosphatidylinositol 3-kinase (PI3K), AKT, and nuclear factor (NF)-κB in the GM-CSF-stimulated neutrophils-like dHL-60 cells. Conclusions: Therefore, these results reveal for the first time that TRYP inhibits OSM release via the down-regulation of PI3K-AKT-NF-κB axis from neutrophils, presenting its potential as a therapeutic agent for inflammatory responses. Full article
(This article belongs to the Special Issue Effects of Plant Extracts on Human Health)
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<p>TRYP reduces OSM release. dHL-60 cells were stimulated with GM-CSF, with or without TRYP, for 4 h. (<b>a</b>) The cell viability was assessed using an MTT assay. (<b>b</b>) OSM production was examined using ELISA. (<b>c</b>) Representative images for OSM were obtained by confocal microscopy (scale bar, 10 µm). * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>TRYP reduces the OSM mRNA levels. dHL-60 cells were stimulated with GM-CSF, with or without TRYP, for 30 min. OSM mRNA expression was assessed with qPCR. * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>TRYP reduces the phosphorylation of PI3K. The phospho-PI3K levels were analyzed using immunoblots. Quantitative analysis of blots from three independent experiments is displayed in the right panel. *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>TRYP reduces the phosphorylation of AKT. The phospho-AKT levels were measured by WB analysis. Quantitative analysis of blots from three independent experiments is displayed in the right panel. *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>TRYP reduces the phosphorylation of NF-κB. The phospho-NF-κB levels were analyzed using immunoblots. Quantitative analysis of blots from three independent experiments is displayed in the right panel. *** <span class="html-italic">p</span> &lt; 0.001.</p>
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24 pages, 10762 KiB  
Article
A Cascade Fractional-N Synthesizer Topology of DLL and Frequency Multiplier for 5G+ Communication Systems
by Kyu-Hyun Nam, Nam-Pyo Hong and Jun-Seok Park
Electronics 2024, 13(23), 4685; https://doi.org/10.3390/electronics13234685 - 27 Nov 2024
Viewed by 441
Abstract
This study presents a synthesizer topology based on a delay-locked loop (DLL) and programmable frequency multiplier for 5G+ communication systems. The proposed synthesizer comprises a 512-phase DLL, an intermediate frequency generator (IFG), and an RF frequency multiplier (RFFM). The 512-phase DLL provides [...] Read more.
This study presents a synthesizer topology based on a delay-locked loop (DLL) and programmable frequency multiplier for 5G+ communication systems. The proposed synthesizer comprises a 512-phase DLL, an intermediate frequency generator (IFG), and an RF frequency multiplier (RFFM). The 512-phase DLL provides 512 delayed pulses through a chain of 256 delay units and single-to-differential complementary converters (S2DCs). The IFG comprises I/Q-multiplexers, I/Q-accumulators, an XOR, and an S2DC. The I/Q-multiplexer outputs switch to the phase lag or lead waveforms at every rising or falling edge of the outputs, which makes the I/Q-multiplexer output frequency, fMX, programmable. The IF, fIF, is two times fMX, and fIF is up-converted to RF, fRF, through the RFFM. When the reference clock frequency, fref, is 156.25 MHz, the fIF range is 156.863–312.5 MHz and the fRF dynamic range is approximately 1.89–9.96 GHz. The channel resolution range is 3.698–38.609 MHz. Consequently, the proposed synthesizer provides a wide 134% output frequency bandwidth and a finer channel resolution smaller than fref. The presented synthesizer is fabricated in a 65 nm CMOS process. The total power consumption is 15 mW, and the rms jitter integrated from 1 kHz to 100 MHz measured as 107.6 fs. Full article
(This article belongs to the Special Issue Advanced CMOS Devices and Applications, 2nd Edition)
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<p>Block diagrams: (<b>a</b>) MDLL; (<b>b</b>) SSPLL; (<b>c</b>) ILPLL.</p>
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<p>The proposed synthesizer block diagram.</p>
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<p>The 256-S2DCs: (<b>a</b>) Schematic. (<b>b</b>) Output waveforms.</p>
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<p>(<b>a</b>) P<sub>1</sub>–P<sub>16</sub>, <span class="html-italic">V<sub>Q</sub></span> and <span class="html-italic">V<sub>I</sub></span> (18<span class="html-italic">t<sub>d</sub></span> period), and <span class="html-italic">V<sub>Q</sub></span> (4<span class="html-italic">t<sub>d</sub></span> period) pulses. (<b>b</b>) <span class="html-italic">V<sub>Q</sub></span>, <span class="html-italic">V<sub>I</sub></span>, and <span class="html-italic">V<sub>IF</sub></span> pulses when <span class="html-italic">AC<sub>M</sub></span> = 2–6 and switching to phase lag. (<b>c</b>) <span class="html-italic">V<sub>Q</sub></span>, <span class="html-italic">V<sub>I</sub></span>, and <span class="html-italic">V<sub>IF</sub></span> pulses when <span class="html-italic">AC<sub>M</sub></span> = 1–5 and switching to phase lead.</p>
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<p><span class="html-italic">V<sub>IF</sub></span>, <span class="html-italic">V<sub>I</sub></span>, and <span class="html-italic">V<sub>Q</sub></span> waveforms. (<b>a</b>) <span class="html-italic">V<sub>IF</sub></span> is the 50% duty cycle. (<b>b</b>) <span class="html-italic">V<sub>IF</sub></span> is the ±0.5<span class="html-italic">t<sub>d</sub></span> duty cycle offsets from the 50% duty cycle.</p>
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<p>Phase noise sources of the proposed synthesizer.</p>
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<p>Clock waveforms of (<b>a</b>) ideal reference; (<b>b</b>) jitter-accumulated VCO.</p>
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<p>TSPC PFD schematic.</p>
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<p>Charge pump schematic.</p>
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<p>The proposed PFD+CP PN simulations with increased <span class="html-italic">R<sub>dn</sub></span> and <span class="html-italic">R<sub>dp</sub></span>.</p>
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<p>Proposed schematic. (<b>a</b>) The first 255 DUs. (<b>b</b>) The last DU in the VCDL DU chain.</p>
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<p>DU SS/100 °C and FF/−20 °C simulation.</p>
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<p>PN simulations on DU<sub>16</sub>, DU<sub>32</sub>, DU<sub>48</sub>, DU<sub>64</sub>, and DU<sub>80</sub> (blue curves) and estimated PN curve (red) on DU<sub>256</sub>.</p>
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<p>(<b>a</b>) Jitter-added P<sub>1</sub>–P<sub>16</sub> waveforms. (<b>b</b>) Jitter-added V<sub>PSP</sub> V<sub>PSN</sub>, and V<sub>XOR</sub> pulses for 14<span class="html-italic">t<sub>d</sub></span> (top) and 9<span class="html-italic">t<sub>d</sub></span> (bottom).</p>
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<p>Harmonic generator schematic.</p>
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<p>Proposed HG ideal. (<b>a</b>) Internal voltage and current pulses. (<b>b</b>) Single and differential output current pulses.</p>
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<p>Ideal (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>). (<b>a</b>) Pulse. (<b>b</b>) Spectrum. For <span class="html-italic">AC<sub>M</sub></span> = 254, simulated (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>). (<b>c</b>) Pulse. (<b>d</b>) Spectrum. For <span class="html-italic">AC<sub>M</sub></span> = 253, simulated (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>). (<b>e</b>) Pulse. (<b>f</b>) Spectrum.</p>
Full article ">Figure 17 Cont.
<p>Ideal (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>). (<b>a</b>) Pulse. (<b>b</b>) Spectrum. For <span class="html-italic">AC<sub>M</sub></span> = 254, simulated (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>). (<b>c</b>) Pulse. (<b>d</b>) Spectrum. For <span class="html-italic">AC<sub>M</sub></span> = 253, simulated (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>). (<b>e</b>) Pulse. (<b>f</b>) Spectrum.</p>
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<p>(<b>a</b>) HG output <span class="html-italic">L<sub>P</sub></span>-C<sub>bank</sub>. (<b>b</b>) Equivalent parallel <span class="html-italic">L<sub>P</sub></span>-C<sub>bank.</sub> (<b>b</b>) All M<sub>1</sub>–M<sub>10</sub> are turned on. (<b>c</b>) All M<sub>1</sub>–M<sub>10</sub> are turned off.</p>
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<p>HG differential output (<span class="html-italic">H<sub>OP</sub></span> − <span class="html-italic">H<sub>ON</sub></span>) impedance simulations. (<b>a</b>) TT process at 25 °C. (<b>b</b>) Zoomed simulations.</p>
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<p>HG differential output (<span class="html-italic">H<sub>OP</sub> − H<sub>ON</sub></span>) AC simulation for FF, TT, and SS processes. (<b>a</b>) Without negative-g<sub>m.</sub> (<b>b</b>) With negative-g<sub>m</sub> compensation.</p>
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<p>Schematic of a buffer with an ACACL.</p>
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<p>For <span class="html-italic">AC<sub>M</sub></span> = 253. (<b>a</b>) (I<sub>HG</sub><sup>+</sup> − I<sub>HG</sub><sup>−</sup>) spectrum. (<b>b</b>) HG output spectrum. (<b>c</b>) First BUF output spectrum. (<b>d</b>) Second BUF output spectrum.</p>
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<p>The second BUF output spectrum. (<b>a</b>) <span class="html-italic">AC<sub>M</sub></span> = 127. (<b>b</b>) <span class="html-italic">AC<sub>M</sub></span> = 1.</p>
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<p>Photograph of the proposed synthesizer.</p>
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<p>Test environment block diagram.</p>
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<p>Driver amplifier with external output matching.</p>
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<p>DA. (<b>a</b>) OP1dB simulation. (<b>b</b>) S22 measurements of chip#1–chip#5.</p>
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<p>Capacitor bank (C<sub>bank</sub>) calibration block diagram.</p>
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<p>Oscillating frequency calibration error.</p>
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<p>The synthesizer output spectrum waveform. (<b>a</b>) <span class="html-italic">AC<sub>M</sub></span> = 1 and <span class="html-italic">RF<sub>FMF</sub></span> = 32. (<b>b</b>) <span class="html-italic">AC<sub>M</sub></span> = 2 and <span class="html-italic">RF<sub>FMF</sub></span> = 32. (<b>c</b>) <span class="html-italic">AC<sub>M</sub></span> = 254 and <span class="html-italic">RF<sub>FMF</sub></span> = 12.</p>
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<p>The worst synthesizer output HRRs. (<b>a</b>) <span class="html-italic">AC<sub>M</sub></span> = 1, 127, and 253. (<b>b</b>) <span class="html-italic">AC<sub>M</sub></span> = 2, 128, and 254.</p>
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<p>The synthesizer PN curves of 1.89 and 9.96 GHz.</p>
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27 pages, 460 KiB  
Article
A New Inclusion on Inequalities of the Hermite–Hadamard–Mercer Type for Three-Times Differentiable Functions
by Talib Hussain, Loredana Ciurdariu and Eugenia Grecu
Mathematics 2024, 12(23), 3711; https://doi.org/10.3390/math12233711 - 26 Nov 2024
Viewed by 295
Abstract
The goal of this study is to develop numerous Hermite–Hadamard–Mercer (H–H–M)-type inequalities involving various fractional integral operators, including classical, Riemann–Liouville (R.L), k-Riemann–Liouville (k-R.L), and their generalized fractional integral operators. In addition, we establish a number of corresponding fractional integral inequalities for three-times differentiable [...] Read more.
The goal of this study is to develop numerous Hermite–Hadamard–Mercer (H–H–M)-type inequalities involving various fractional integral operators, including classical, Riemann–Liouville (R.L), k-Riemann–Liouville (k-R.L), and their generalized fractional integral operators. In addition, we establish a number of corresponding fractional integral inequalities for three-times differentiable convex functions that are connected to the right side of the H–H–M-type inequality. For these results, further remarks and observations are provided. Following that, a couple of graphical representations are shown to highlight the key findings of our study. Finally, some applications on special means are shown to demonstrate the effectiveness of our inequalities. Full article
(This article belongs to the Special Issue Fractional Calculus and Mathematical Applications, 2nd Edition)
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<p>(<bold>a</bold>) The graph surfaces of the left member (graph in red) and the right member (graph in green) of the inequality from Theorem 2 are given for <inline-formula><mml:math id="mm435"><mml:semantics><mml:mrow><mml:mi>f</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>θ</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mi>θ</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow><mml:mi>ϑ</mml:mi></mml:msup></mml:mrow></mml:semantics></mml:math></inline-formula>, <inline-formula><mml:math id="mm436"><mml:semantics><mml:mrow><mml:msub><mml:mi>ϑ</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ϑ</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>4</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ω</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>2</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ω</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:semantics></mml:math></inline-formula>, and <inline-formula><mml:math id="mm437"><mml:semantics><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi>ϑ</mml:mi><mml:mo>∈</mml:mo><mml:mrow><mml:mo>[</mml:mo><mml:mn>5</mml:mn><mml:mo>,</mml:mo><mml:mn>6</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:mrow></mml:semantics></mml:math></inline-formula>. (<bold>b</bold>) Four surfaces that represent the left and the right members of the inequalities from Theorem 2 and from Theorem 6 in [<xref ref-type="bibr" rid="B20-mathematics-12-03711">20</xref>] are graphically illustrated for <inline-formula><mml:math id="mm438"><mml:semantics><mml:mrow><mml:mi>f</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>θ</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mi>θ</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow><mml:mi>ϑ</mml:mi></mml:msup></mml:mrow></mml:semantics></mml:math></inline-formula> and the same parameters: <inline-formula><mml:math id="mm439"><mml:semantics><mml:mrow><mml:msub><mml:mi>ϑ</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ϑ</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>4</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ω</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>2</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ω</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:semantics></mml:math></inline-formula>, and <inline-formula><mml:math id="mm440"><mml:semantics><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi>ϑ</mml:mi><mml:mo>∈</mml:mo><mml:mrow><mml:mo>[</mml:mo><mml:mn>6.4</mml:mn><mml:mo>,</mml:mo><mml:mn>7</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:mrow></mml:semantics></mml:math></inline-formula>. The left members <inline-formula><mml:math id="mm441"><mml:semantics><mml:msub><mml:mi>M</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:semantics></mml:math></inline-formula> and <inline-formula><mml:math id="mm442"><mml:semantics><mml:mrow><mml:mi>M</mml:mi><mml:msub><mml:mi>s</mml:mi><mml:mn>2</mml:mn></mml:msub></mml:mrow></mml:semantics></mml:math></inline-formula> are the red and blue surfaces, respectively, and the right members <inline-formula><mml:math id="mm443"><mml:semantics><mml:msub><mml:mi>M</mml:mi><mml:mi>d</mml:mi></mml:msub></mml:semantics></mml:math></inline-formula> and <inline-formula><mml:math id="mm444"><mml:semantics><mml:mrow><mml:mi>M</mml:mi><mml:msub><mml:mi>d</mml:mi><mml:mn>2</mml:mn></mml:msub></mml:mrow></mml:semantics></mml:math></inline-formula> are the green and magenta surfaces, respectively.</p>
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<p>(<bold>a</bold>) The same graphics as in <xref ref-type="fig" rid="mathematics-12-03711-f001">Figure 1</xref>b are presented, but rotated. (<bold>b</bold>) The graph surfaces of the left member (graph in blue) and the right member (graph in magenta) of the inequality from Theorem 5 are given for <inline-formula><mml:math id="mm445"><mml:semantics><mml:mrow><mml:mi>f</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>θ</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mi>θ</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow><mml:mn>5</mml:mn></mml:msup></mml:mrow></mml:semantics></mml:math></inline-formula>, <inline-formula><mml:math id="mm446"><mml:semantics><mml:mrow><mml:msub><mml:mi>ϑ</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ϑ</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>4</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ω</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>2</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.277778em"/><mml:msub><mml:mi>ω</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:semantics></mml:math></inline-formula>, and <inline-formula><mml:math id="mm447"><mml:semantics><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn>1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi>α</mml:mi><mml:mo>∈</mml:mo><mml:mrow><mml:mo>[</mml:mo><mml:mn>5</mml:mn><mml:mo>,</mml:mo><mml:mn>9</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:mrow></mml:semantics></mml:math></inline-formula>.</p>
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19 pages, 53371 KiB  
Article
Efficient UAV-Based Automatic Classification of Cassava Fields Using K-Means and Spectral Trend Analysis
by Apinya Boonrang, Pantip Piyatadsananon and Tanakorn Sritarapipat
AgriEngineering 2024, 6(4), 4406-4424; https://doi.org/10.3390/agriengineering6040250 - 22 Nov 2024
Viewed by 457
Abstract
High-resolution images captured by Unmanned Aerial Vehicles (UAVs) play a vital role in precision agriculture, particularly in evaluating crop health and detecting weeds. However, the detailed pixel information in these images makes classification a time-consuming and resource-intensive process. Despite these challenges, UAV imagery [...] Read more.
High-resolution images captured by Unmanned Aerial Vehicles (UAVs) play a vital role in precision agriculture, particularly in evaluating crop health and detecting weeds. However, the detailed pixel information in these images makes classification a time-consuming and resource-intensive process. Despite these challenges, UAV imagery is increasingly utilized for various agricultural classification tasks. This study introduces an automatic classification method designed to streamline the process, specifically targeting cassava plants, weeds, and soil classification. The approach combines K-means unsupervised classification with spectral trend-based labeling, significantly reducing the need for manual intervention. The method ensures reliable and accurate classification results by leveraging color indices derived from RGB data and applying mean-shift filtering parameters. Key findings reveal that the combination of the blue (B) channel, Visible Atmospherically Resistant Index (VARI), and color index (CI) with filtering parameters, including a spatial radius (sp) = 5 and a color radius (sr) = 10, effectively differentiates soil from vegetation. Notably, using the green (G) channel, excess red (ExR), and excess green (ExG) with filtering parameters (sp = 10, sr = 20) successfully distinguishes cassava from weeds. The classification maps generated by this method achieved high kappa coefficients of 0.96, with accuracy levels comparable to supervised methods like Random Forest classification. This technique offers significant reductions in processing time compared to traditional methods and does not require training data, making it adaptable to different cassava fields captured by various UAV-mounted optical sensors. Ultimately, the proposed classification process minimizes manual intervention by incorporating efficient pre-processing steps into the classification workflow, making it a valuable tool for precision agriculture. Full article
(This article belongs to the Special Issue Computer Vision for Agriculture and Smart Farming)
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<p>Study area of cassava fields captured by the DJI Phantom 4 Pro sensor.</p>
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<p>Study area of cassava fields captured by the DJI Phantom 4 sensor.</p>
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<p>Proposed classification process.</p>
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<p>Boxplot of the spectral value of classes.</p>
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<p>Kappa coefficient of K-means, RF, and the proposed classification process.</p>
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<p>Classification results using the proposed classification process: (<b>a</b>) Plot 1, showing results from an area with patchy weeds and thin weed patches; (<b>b</b>) Plot 5, showing results from an area with fewer weed patches and dense weed coverage; (<b>c</b>) Plot 8, showing results from an area with varying light illumination.</p>
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11 pages, 3329 KiB  
Article
Effect of IGF1 on Myogenic Proliferation and Differentiation of Bovine Skeletal Muscle Satellite Cells Through PI3K/AKT Signaling Pathway
by Xin Li, Yang Cao, Yu Liu, Wenwen Fang, Cheng Xiao, Yang Cao and Yumin Zhao
Genes 2024, 15(12), 1494; https://doi.org/10.3390/genes15121494 - 21 Nov 2024
Viewed by 470
Abstract
Background: Cultivated meat, an alternative to conventional meat, has substantial potential for alleviating environmental and ethical concerns. This method of manufacturing meat involves the isolation of skeletal muscle satellite cells (SMSCs) from donor animals, after which they proliferate in vitro and differentiate [...] Read more.
Background: Cultivated meat, an alternative to conventional meat, has substantial potential for alleviating environmental and ethical concerns. This method of manufacturing meat involves the isolation of skeletal muscle satellite cells (SMSCs) from donor animals, after which they proliferate in vitro and differentiate into primitive muscle fibers. The aim of this research was to evaluate how the insulin-like growth factor 1 (IGF1) gene regulates the myogenic differentiation of bovine skeletal muscle satellite cells (bSMSCs). Methods: bSMSCs isolated from newborn calves were cultured to the third generation in vitro and differentiated into myoblasts via the serum withdrawal method. An overexpression lentivirus and siRNA targeting the IGF1 gene were constructed and transduced into bSMSCs, which were subsequently analyzed via real-time fluorescence quantitative PCR(qRT–PCR) and Western blots. The mRNA and protein levels of the myogenic differentiation markers myosin heavy chain (MyHC) and myogenin (MyoG) were determined. Results: The results revealed that the lentivirus overexpressing the IGF1 gene significantly increased the expression of MyHC and MyoG, whereas the expression of both the MyHC and MyoG mRNAs and proteins was strongly reduced by si-IGF1. Conclusions: IGF1 positively regulates the myogenic differentiation of bSMSCs. This study provides a reference for further elucidating the molecular mechanism by which the IGF1 gene regulates the myogenic differentiation of bSMSCs via the PI3K/Akt signaling pathway and lays a foundation for establishing a regulatory network of bovine muscle growth and development. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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<p>Immunofluorescence of MyHC in bSMSCs on the 7th day (600×).</p>
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<p>Detection of IGF1 expression in the different stages of myogenic differentiation. (<b>A</b>) The mRNA expression of IGF1 on the days of 0, 3th and 7th. (<b>B</b>,<b>C</b>) The protein expression of IGF1 on the days of 0, 3th and 7th. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>IGF1 mRNA expression levels after transfection with IGF1 siRNA. *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Determination of the transfection efficacy of the IGF1-overexpressing lentivirus.</p>
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<p>(<b>A</b>) Determination of the mRNA levels of Pax7, a marker gene of proliferation. (<b>B</b>) Determination of Pax7 protein levels, which are a marker of proliferation.</p>
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<p>Role of IGF1 in the regulation of myogenic differentiation. (<b>A</b>) The mRNA expression of IGF1. (<b>B</b>) The protein expression of IGF1. * <span class="html-italic">p</span> &lt; 0.05, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Determination of the expression levels of myogenic differentiation marker genes. (<b>A</b>) The mRNA expression of MyHC and MyoG. (<b>B</b>) The protein expression of MyHC and MyoG. ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>(<b>A</b>) Expression levels of genes related to the PI3k/AKT signaling pathway. (<b>B</b>) Expression levels of proteins related to the PI3k/AKT signaling pathway. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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16 pages, 1106 KiB  
Article
Ultrasound-Assisted Extraction of Alginate from Fucus vesiculosus Seaweed By-Product Post-Fucoidan Extraction
by Viruja Ummat, Ming Zhao, Saravana Periaswamy Sivagnanam, Shanmugapriya Karuppusamy, Henry Lyons, Stephen Fitzpatrick, Shaba Noore, Dilip K. Rai, Laura G. Gómez-Mascaraque, Colm O’Donnell, Anet Režek Jambark and Brijesh Kumar Tiwari
Mar. Drugs 2024, 22(11), 516; https://doi.org/10.3390/md22110516 - 14 Nov 2024
Viewed by 966
Abstract
The solid phase byproduct obtained after conventional fucoidan extraction from the brown seaweed Fucus vesiculosus can be used as a source containing alginate. This study involves ultrasound-assisted extraction (UAE) of alginate from the byproduct using sodium bicarbonate. Response surface methodology (RSM) was applied [...] Read more.
The solid phase byproduct obtained after conventional fucoidan extraction from the brown seaweed Fucus vesiculosus can be used as a source containing alginate. This study involves ultrasound-assisted extraction (UAE) of alginate from the byproduct using sodium bicarbonate. Response surface methodology (RSM) was applied to obtain the optimum conditions for alginate extraction. The ultrasound (US) treatments included 20 kHz of frequency, 20–91% of amplitude, and an extraction time of 6–34 min. The studied investigated the crude alginate yield (%), molecular weight, and alginate content (%) of the extracts. The optimum conditions for obtaining alginate with low molecular weight were found to be 69% US amplitude and sonication time of 30 min. The alginate extracts obtained were characterized using Fourier transform infrared (FTIR) spectroscopy, thermogravimetric analysis (TGA), and differential scanning calorimetry (DSC). Ultrasound-assisted extraction involving a short treatment lasting 6–34 min was found to be effective in extracting alginate from the byproduct compared to the conventional extraction of alginate using stirring at 415 rpm and 60 °C for 24 h. The US treatments did not adversely impact the alginate obtained, and the extracted alginates were found to have similar characteristics to the alginate obtained from conventional extraction and commercial sodium alginate. Full article
(This article belongs to the Special Issue Green Extraction for Obtaining Marine Bioactive Products)
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<p>Response surface plots of experimental design showing the effect of ultrasonic amplitude and sonication treatment time on (<b>a</b>) crude alginate yield; (<b>b</b>) alginate content; and (<b>c</b>) Mw.</p>
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<p>TGA and DSC curves of crude alginate (O1 and O2 samples) obtained with optimum UAE conditions compared with reference sodium bicarbonate and commercial sodium alginate samples.</p>
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<p>The mean FTIR spectra of alginate samples extracted with UAE (T1–T13), conventional extraction (i.e., TCA and TCB), and a commercial sodium alginate sample.</p>
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<p>Schematic of alginate extraction workflow using the seaweed byproduct obtained from <span class="html-italic">Fucus vesiculosus</span> after fucoidan extraction.</p>
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18 pages, 4159 KiB  
Article
Preclinical Implementation of matRadiomics: A Case Study for Early Malformation Prediction in Zebrafish Model
by Fabiano Bini, Elisa Missori, Gaia Pucci, Giovanni Pasini, Franco Marinozzi, Giusi Irma Forte, Giorgio Russo and Alessandro Stefano
J. Imaging 2024, 10(11), 290; https://doi.org/10.3390/jimaging10110290 - 14 Nov 2024
Viewed by 707
Abstract
Radiomics provides a structured approach to support clinical decision-making through key steps; however, users often face difficulties when switching between various software platforms to complete the workflow. To streamline this process, matRadiomics integrates the entire radiomics workflow within a single platform. This study [...] Read more.
Radiomics provides a structured approach to support clinical decision-making through key steps; however, users often face difficulties when switching between various software platforms to complete the workflow. To streamline this process, matRadiomics integrates the entire radiomics workflow within a single platform. This study extends matRadiomics to preclinical settings and validates it through a case study focused on early malformation differentiation in a zebrafish model. The proposed plugin incorporates Pyradiomics and streamlines feature extraction, selection, and classification using machine learning models (linear discriminant analysis—LDA; k-nearest neighbors—KNNs; and support vector machines—SVMs) with k-fold cross-validation for model validation. Classifier performances are evaluated using area under the ROC curve (AUC) and accuracy. The case study indicated the criticality of the long time required to extract features from preclinical images, generally of higher resolution than clinical images. To address this, a feature analysis was conducted to optimize settings, reducing extraction time while maintaining similarity to the original features. As a result, SVM exhibited the best performance for early malformation differentiation in zebrafish (AUC = 0.723; accuracy of 0.72). This case study underscores the plugin’s versatility and effectiveness in early biological outcome prediction, emphasizing its applicability across biomedical research fields. Full article
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<p>The workflow of the extended version of matRadiomics for preclinical studies.</p>
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<p>Mean relative error for each feature for the two different preprocessing methods.</p>
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<p>Mean relative error for bin count equal to one and equal to sixty-four.</p>
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<p>Mean relative error on features for the first and the second zebrafish dataset.</p>
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<p>Example of all_fish (<b>a</b>), heart (<b>b</b>), head (<b>c</b>), eye (<b>d</b>), yolk (<b>e</b>), and length (<b>f</b>) masks used in the study.</p>
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<p>(<b>a</b>) The window that appears to manually assign the name of the mask for the analysis of the first image. (<b>b</b>) The window with the list of masks used after the extraction of the features of the first image.</p>
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<p>Example of bar plot for selected features for all masks without all_fish mask. In red, the feature selected using the PBC method.</p>
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<p>Example of performance of the predictive model for the all_fish mask based on the ROC curve, precision and confusion matrix.</p>
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<p>The best results obtained for each mask, together with the corresponding image, the selected features, and the predictive ML model that achieves the highest performance.</p>
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