Search Results (756)

This study addresses the urgent need for effective methods to monitor and conserve Araucaria angustifolia, a critically endangered species of immense ecological and cultural significance in southern Brazil. Using high-resolution satellite images from Google Earth, we apply the YOLOv7x deep learning model to detect this species in two distinct urban contexts in Curitiba, Paraná: isolated trees across the urban landscape and A. angustifolia individuals within forest remnants. Data augmentation techniques, including image rotation, hue and saturation adjustments, and mosaic augmentation, were employed to increase the model’s accuracy and robustness. Through a 5-fold cross-validation, the model achieved a mean Average Precision (AP) of 90.79% and an F1-score of 88.68%. Results show higher detection accuracy in forest remnants, where the homogeneous background of natural landscapes facilitated the identification of trees, compared to urban areas where complex visual elements like building shadows presented challenges. To reduce false positives, especially misclassifications involving palm species, additional annotations were introduced, significantly enhancing performance in urban environments. These findings highlight the potential of integrating remote sensing with deep learning to automate large-scale forest inventories. Furthermore, the study highlights the broader applicability of the YOLOv7x model for urban forestry planning, offering a cost-effective solution for biodiversity monitoring. The integration of predictive data with urban forest maps reveals a spatial correlation between A. angustifolia density and the presence of forest fragments, suggesting that the preservation of these areas is vital for the species’ sustainability. The model’s scalability also opens the door for future applications in ecological monitoring across larger urban areas. As urban environments continue to expand, understanding and conserving key species like A. angustifolia is critical for enhancing biodiversity, resilience, and addressing climate change. Full article

This study aims to elucidate the population structure and genetic diversity of Xinjiang brown cattle (XJBC) and Chinese Simmental cattle (CSC) while conducting genome-wide selective signatures analyses to identify selected genes associated with milk production traits in both breeds. Based on whole-genome resequencing technology, whole-genome single nucleotide polymorphisms (SNPs) of 83 Xinjiang brown cattle and 80 Chinese Simmental cattle were detected to resolve the genetic diversity and genetic structure of the two populations, whole-genome selective elimination analysis was performed for the two breeds of cattle using the fixation index (F_st) and nucleotide diversity (θπ ratio), and enrichment analysis was performed to explore their biological functions further. Both breeds exhibited relatively rich genetic diversity, with the Chinese Simmental cattle demonstrating higher genetic diversity than Xinjiang brown cattle. The IBS and G matrix results indicated that most individuals in the two populations were farther apart from each other. The PCA and neighbor-joining tree revealed no hybridization between the two breeds, but there was a certain degree of genetic differences among the individuals in the two breeds. Population structure analysis revealed that the optimal number of ancestors was three when K = 3. This resulted in clear genetic differentiation between the two populations, with only a few individuals having one ancestor and the majority having two or three common ancestors. A combined analysis of F_st and θπ was used to screen 112 candidate genes related to milk production traits in Xinjiang brown cattle and Chinese Simmental cattle. This study used genome-wide SNP markers to reveal the genetic diversity, population structure, and selection characteristics of two breeds. This study also screened candidate genes related to milk production traits, providing a theoretical basis for conserving genetic resources and improving genetic selection for milk production traits in Xinjiang brown cattle and Chinese Simmental cattle. Full article

Accurately monitoring aboveground biomass (AGB) and tree mortality is crucial for understanding forest health and carbon dynamics. LiDAR (Light Detection and Ranging) has emerged as a powerful tool for capturing forest structure across different spatial scales. However, the effectiveness of LiDAR for predicting AGB and tree mortality depends on the type of instrument, platform, and the resolution of the point cloud data. We evaluated the effectiveness of three distinct LiDAR-based approaches for predicting AGB and tree mortality in a 25.6 ha North American temperate forest. Specifically, we evaluated the following: GEDI-simulated waveforms from airborne laser scanning (ALS), grid-based structural metrics derived from unmanned aerial vehicle (UAV)-borne lidar data, and individual tree detection (ITD) from ALS data. Our results demonstrate varying levels of performance in the approaches, with ITD emerging as the most accurate for AGB modeling with a median R² value of 0.52, followed by UAV (0.38) and GEDI (0.11). Our findings underscore the strengths of the ITD approach for fine-scale analysis, while grid-based forest metrics used to analyze the GEDI and UAV LiDAR showed promise for broader-scale monitoring, if more uncertainty is acceptable. Moreover, the complementary strengths across scales of each LiDAR method may offer valuable insights for forest management and conservation efforts, particularly in monitoring forest dynamics and informing strategic interventions aimed at preserving forest health and mitigating climate change impacts. Full article

The interaction between trees’ water needs during drought and the signals that appear in their canopies is not fully understood. The first visually detectable signs, which we describe as early warning signals in tree canopies, are often not noticeable at first glance. When these signs become widely apparent, tree decline is already underway. In this study, we focus on identifying early visible signs of drought stress in the tree crowns, such as very small leaves, premature needle/leaf discolouration and abscission, and defoliation. We provide guidance on recognising initial signs, offer specific examples, and comprehensively analyse each signal. Our focus is on signs in the tree crowns that appear during intense and prolonged droughts, which we confirmed by calculating the Standardised Precipitation Evapotranspiration Index (SPEI). Our findings are based on 20 years (2004–2024) of continuous fieldwork and data collection from permanent sample plots in Serbia, which was conducted as part of the International Co-operative Programme on Assessment and Monitoring of Air Pollution Effects on Forests (ICP Forests). We also conducted a comprehensive review of the literature and key findings related to the early signs we address. This research was further motivated by the signs observed in the tree crowns during the summer of 2024 due to extreme climatic events, which classify this year as one of the hottest recorded in Serbia. However, we still cannot conclusively determine which specific trees will die back based solely on these early warning signals, as some trees manage to withstand severe drought conditions. Nonetheless, the widespread appearance of these indicators is a clear warning of significant ecosystem instability, potentially leading to the decline of individual trees or larger groups. Full article

Stem volume is a critical factor in managing and evaluating forest resources. At present, stem volume is commonly estimated indirectly by constructing a taper model that utilizes sampling, diameter at breast height (DBH), and tree height. However, these estimates are constrained by errors arising from spatial and stand environment variations as well as uncertainties in height measurements. To address these issues, this study aimed to accurately estimate stem volume using light detection and ranging (LiDAR) technology, a key tool in modern precision forestry. LiDAR data were used to build comprehensive three-dimensional models of forests with multi-platform LiDAR systems. This approach allowed for precise measurements of tree heights and stem diameters at various heights, effectively mitigating the limitations of earlier measurement methods. Based on these data, a Kozak taper curve was developed at the individual tree level using LiDAR-derived tree height and diameter estimates. Integrating this curve with LiDAR data enabled a hybrid approach to estimating stem volume, facilitating the calculation of diameters at points not directly identifiable from LiDAR data alone. The proposed method was implemented and evaluated for two economically significant tree species in Korea: Pinus koraiensis and Larix kaempferi. The RMSE comparison between the taper curve-based approach and the hybrid volume estimation method showed that, for Pinus koraiensis, the RMSE was 0.11 m³ using the taper curve-based approach and 0.07 m³ for the hybrid method, while for Larix kaempferi, the RMSE was 0.13 m³ and 0.05 m³, respectively. The estimation error of the hybrid method was approximately half that of the taper curve-based approach. Consequently, the hybrid volume estimation method, which integrates LiDAR and the taper model, overcomes the limitations of conventional taper curve-based approaches and contributes to improving the accuracy of forest resource monitoring. Full article

The aboveground biomass (AGB) of individual trees is a critical indicator for assessing urban forest productivity and carbon storage. In the context of global warming, it plays a pivotal role in understanding urban forest carbon sequestration and regulating the global carbon cycle. Recent advances in light detection and ranging (LiDAR) have enabled the detailed characterization of three-dimensional (3D) structures, significantly enhancing the accuracy of individual tree AGB estimation. This review examines studies that use LiDAR-derived 3D structural metrics to model and estimate individual tree AGB, identifying key metrics that influence estimation accuracy. A bibliometric analysis of 795 relevant articles from the Web of Science Core Collection was conducted using R Studio (version 4.4.1) and VOSviewer 1.6.20 software, followed by an in-depth review of 80 papers focused on urban forests, published after 2010 and selected from the first and second quartiles of the Chinese Academy of Sciences journal ranking. The results show the following: (1) Dalponte2016 and watershed are more widely used among 2D raster-based algorithms, and 3D point cloud-based segmentation algorithms offer greater potential for innovation; (2) tree height and crown volume are important 3D structural metrics for individual tree AGB estimation, and biomass indices that integrate these parameters can further improve accuracy and applicability; (3) machine learning algorithms such as Random Forest and deep learning consistently outperform parametric methods, delivering stable AGB estimates; (4) LiDAR data sources, point cloud density, and forest types are important factors that significantly affect the accuracy of individual tree AGB estimation. Future research should emphasize deep learning applications for improving point cloud segmentation and 3D structure extraction accuracy in complex forest environments. Additionally, optimizing multi-sensor data fusion strategies to address data matching and resolution differences will be crucial for developing more accurate and widely applicable AGB estimation models. Full article

Mango (Mangifera Indica L.), a key horticultural crop, particularly in Pakistan, has been primarily studied locally using low- to medium-resolution satellite imagery, usually focusing on a particular phenological stage. The large canopy size, complex tree structure, and unique phenology of mango trees further accentuate intrinsic challenges posed by low-spatiotemporal-resolution data. The absence of mango-specific vegetation indices compounds the problem of accurate health classification and yield estimation at the tree level. To overcome these issues, this study utilizes high-resolution multi-spectral UAV imagery collected from two mango orchards in Multan, Pakistan, throughout the annual phenological cycle. It introduces MangiSpectra, an integrated two-staged framework based on Long Short-Term Memory (LSTM) networks. In the first stage, nine conventional and three mango-specific vegetation indices derived from UAV imagery were processed through fine-tuned LSTM networks to classify the health of individual mango trees. In the second stage, associated data such as the trees’ age, variety, canopy volume, height, and weather data were combined with predicted health classes for yield estimation through a decision tree algorithm. Three mango-specific indices, namely the Mango Tree Yellowness Index (MTYI), Weighted Yellowness Index (WYI), and Normalized Automatic Flowering Detection Index (NAFDI), were developed to measure the degree of canopy covered by flowers to enhance the robustness of the framework. In addition, a Cumulative Health Index (CHI) derived from imagery analysis after every flight is also proposed for proactive orchard management. MangiSpectra outperformed the comparative benchmarks of AdaBoost and Random Forest in health classification by achieving 93% accuracy and AUC scores of 0.85, 0.96, and 0.92 for the healthy, moderate and weak classes, respectively. Yield estimation accuracy was reasonable with $R^2=0.21$, and $\mathrm{RMSE}=50.18$. Results underscore MangiSpectra’s potential as a scalable precision agriculture tool for sustainable mango orchard management, which can be improved further by fine-tuning algorithms using ground-based spectrometry, IoT-based orchard monitoring systems, computer vision-based counting of fruit on control trees, and smartphone-based data collection and insight dissemination applications. Full article

Precise aboveground biomass (AGB) estimation of forests is crucial for sustainable carbon management and ecological monitoring. Traditional methods, such as destructive sampling, field measurements of Diameter at Breast Height with height (DBH and H), and optical remote sensing imagery, often fall short in capturing detailed spatial heterogeneity in AGB estimation and are labor-intensive. Recent advancements in remote sensing technologies, predominantly Light Detection and Ranging (LiDAR), offer potential improvements in accurate AGB estimation and ecological monitoring. Nonetheless, there is limited research on the combined use of UAS (Uncrewed Aerial System) and Backpack-LiDAR technologies for detailed forest biomass. Thus, our study aimed to estimate AGB at the plot level for Picea crassifolia forests in eastern Qinghai, China, by integrating UAS-LiDAR and Backpack-LiDAR data. The Comparative Shortest Path (CSP) algorithm was employed to segment the point clouds from the Backpack-LiDAR, detect seed points and calculate the DBH of individual trees. After that, using these initial seed point files, we segmented the individual trees from the UAS-LiDAR data by employing the Point Cloud Segmentation (PCS) method and measured individual tree heights, which enabled the calculation of the observed/measured AGB across three specific areas. Furthermore, advanced regression models, such as Random Forest (RF), Multiple Linear Regression (MLR), and Support Vector Regression (SVR), are used to estimate AGB using integrated data from both sources (UAS and Backpack-LiDAR). Our results show that: (1) Backpack-LiDAR extracted DBH compared to field extracted DBH shows about (R² = 0.88, RMSE = 0.04 m) whereas UAS-LiDAR extracted height achieved the accuracy (R² = 0.91, RMSE = 1.68 m), which verifies the reliability of the abstracted DBH and height obtained from the LiDAR data. (2) Individual Tree Segmentation (ITS) using a seed file of X and Y coordinates from Backpack to UAS-LiDAR, attaining a total accuracy F-score of 0.96. (3) Using the allometric equation, we obtained AGB ranges from 9.95–409 (Mg/ha). (4) The RF model demonstrated superior accuracy with a coefficient of determination (R²) of 89%, a relative Root Mean Square Error (rRMSE) of 29.34%, and a Root Mean Square Error (RMSE) of 33.92 Mg/ha compared to the MLR and SVR models in AGB prediction. (5) The combination of Backpack-LiDAR and UAS-LiDAR enhanced the ITS accuracy for the AGB estimation of forests. This work highlights the potential of integrating LiDAR technologies to advance ecological monitoring, which can be very important for climate change mitigation and sustainable environmental management in forest monitoring practices. Full article

Accurately localizing individual trees and identifying species distribution are critical tasks in forestry remote sensing. Visual Simultaneous Localization and Mapping (visual SLAM) algorithms serve as important tools for outdoor spatial positioning and mapping, mitigating signal loss caused by tree canopy obstructions. To address these challenges, a semantic SLAM algorithm called LPD-SLAM (Line-Point-Distance Semantic SLAM) is proposed, which integrates stereo cameras with an inertial measurement unit (IMU), with contributions including dynamic feature removal, an individual tree data structure, and semantic point distance constraints. LPD-SLAM is capable of performing individual tree localization and tree species discrimination tasks in forest environments. In mapping, LPD-SLAM reduces false species detection and filters dynamic objects by leveraging a deep learning model and a novel individual tree data structure. In optimization, LPD-SLAM incorporates point and line feature reprojection error constraints along with semantic point distance constraints, which improve robustness and accuracy by introducing additional geometric constraints. Due to the lack of publicly available forest datasets, we choose to validate the proposed algorithm on eight experimental plots, which are selected to cover different seasons, various tree species, and different data collection paths, ensuring the dataset’s diversity and representativeness. The experimental results indicate that the average root mean square error (RMSE) of the trajectories of LPD-SLAM is reduced by up to 81.2% compared with leading algorithms. Meanwhile, the mean absolute error (MAE) of LPD-SLAM in tree localization is 0.24 m, which verifies its excellent performance in forest environments. Full article

The accurate detection of individual tree crowns and estimation of tree density is essential for effective forest management, biodiversity assessment, and ecological monitoring. The precision of tree crown detection algorithms plays a critical role in providing reliable data for these applications, where even slight inaccuracies can lead to significant deviations in tree population estimates and ecological indicators. Various algorithmic parameters, such as pixel size and crown segmentation thresholds, can substantially impact tree crown detection accuracy. This study aims to explore the influence of tree stand features and parameters on the effectiveness of the individual tree crown detection method based on a watershed algorithm, leading to identifying optimal configurations that enhance the reliability of forest inventories and support sustainable management practices. Our analysis of the algorithm results shows that the features of the tree stand, such as tree height variance and tree crown size variance, significantly impact the algorithm’s output in precisely estimating tree count. Consequently, adjusting the pixel size of a canopy height model in the context of tree stand features is necessary to minimize error. Additionally, our findings show that there is a need to carefully assess the criterion of membership of a detected tree crown in a circular sample plot, which we based on the point cloud. Full article

Vegetation characteristics significantly influence the impact of wildfires on individual building structures, and these effects can be systematically analyzed using heat transfer modelling software. Close-range light detection and ranging (LiDAR) data obtained from uncrewed aerial systems (UASs) capture detailed vegetation morphology; however, the integration of dense vegetation and merged canopies into three-dimensional (3D) models for fire modelling software poses significant challenges. This study proposes a method for integrating the UAS–LiDAR-derived geometric features of vegetation components—such as bark, wooden core, and foliage—into heat transfer models. The data were collected from the natural woodland surrounding an elevated building in Samford, Queensland, Australia. Aboveground biomass (AGB) was estimated for 21 trees utilizing three 3D tree reconstruction tools, with validation against biomass allometric equations (BAEs) derived from field measurements. The most accurate reconstruction tool produced a tree mesh utilized for modelling vegetation geometry. A proof of concept was established with Eucalyptus siderophloia, incorporating vegetation data into heat transfer models. This non-destructive framework leverages available technologies to create reliable 3D tree reconstructions of complex vegetation in wildland–urban interfaces (WUIs). It facilitates realistic wildfire risk assessments by providing accurate heat flux estimations, which are critical for evaluating building safety during fire events, while addressing the limitations associated with direct measurements. Full article

The accurate extraction of individual tree positions is key to forest structure quantification, and Unmanned Aerial Vehicle (UAV) visible light data have become the primary data source for extracting individual tree locations. Compared to deep learning methods, classical detection methods require lower computational resources and have stronger interpretability and applicability. However, in closed-canopy forests, challenges such as crown overlap and uneven light distribution hinder extraction accuracy. To address this, the study improves the existing Revised Local Maxima (RLM) method and proposes a Multi-Source Local Maxima (MSLM) method, based on UAV visible light data, which integrates Canopy Height Models (CHMs) and Digital Orthophoto Mosaics (DOMs). Both the MSLM and RLM methods were used to extract individual tree positions from three different types of closed-canopy stands, and the extraction results of the two methods were compared. The results show that the MSLM method outperforms the RLM in terms of Accuracy Rate (85.59%), Overall Accuracy (99.09%), and F1 score (85.21%), with stable performance across different forest stand types. This demonstrates that the MSLM method can effectively overcome the challenges posed by closed-canopy stands, significantly improving extraction precision. These findings provide a cost-effective and efficient approach for forest resource monitoring and offer valuable insights for forest structure optimization and management. Full article

Utilizing LiDAR sensors mounted on unmanned aerial vehicles (UAVs) to acquire three-dimensional data of fruit orchards and extract precise information about individual trees can greatly facilitate unmanned management. To address the issue of low accuracy in traditional watershed segmentation methods based on canopy height models, this paper proposes an enhanced method to extract individual tree crowns in fruit orchards, enabling the improved detection of overlapping crown features. Firstly, a distribution curve of single-row or single-column treetops is fitted based on the detected treetops using variable window size. Subsequently, a cubic spatial region extending infinitely along the Z-axis is generated with equal width around this curve, and all crown points falling within this region are extracted and then projected onto the central plane. The projecting contour of the crowns on the plane is then fitted using Gaussian functions. Treetops are detected by identifying peak points on the curve fitted by Gaussian functions. Finally, the watershed algorithm is applied to segment fruit tree crowns. The results demonstrate that in citrus orchards with pronounced crown overlap, this novel method significantly reduces the number of undetected trees with a recall of 97.04%, and the F1 score representing the detection accuracy for fruit trees reaches 98.01%. Comparisons between the traditional method and the Gaussian fitting–watershed fusion algorithm across orchards exhibiting varying degrees of crown overlap reveal that the fusion algorithm achieves high segmentation accuracy when dealing with overlapping crowns characterized by significant height variations. Full article

Individual tree segmentation is crucial to extract forest structural parameters, which is vital for forest resource management and ecological monitoring. Airborne LiDAR (ALS), with its ability to rapidly and accurately acquire three-dimensional forest structural information, has become an essential tool for large-scale forest monitoring. However, accurately locating individual trees and mapping canopy boundaries continues to be hindered by the overlapping nature of the tree canopies, especially in dense forests. To address these issues, this study introduces CCD-YOLO, a novel deep learning-based network for individual tree segmentation from the ALS point cloud. The proposed approach introduces key architectural enhancements to the YOLO framework, including (1) the integration of cross residual transformer network extended (CReToNeXt) backbone for feature extraction and multi-scale feature fusion, (2) the application of the convolutional block attention module (CBAM) to emphasize tree crown features while suppressing noise, and (3) a dynamic head for adaptive multi-layer feature fusion, enhancing boundary delineation accuracy. The proposed network was trained using a newly generated individual tree segmentation (ITS) dataset collected from a dense forest. A comprehensive evaluation of the experimental results was conducted across varying forest densities, encompassing a variety of both internal and external consistency assessments. The model outperforms the commonly used watershed algorithm and commercial LiDAR 360 software, achieving the highest indices (precision, F1, and recall) in both tree crown detection and boundary segmentation stages. This study highlights the potential of CCD-YOLO as an efficient and scalable solution for addressing the critical challenges of accuracy segmentation in complex forests. In the future, we will focus on enhancing the model’s performance and application. Full article

Background: Orthodontic problems can affect vital quality of life functions, such as swallowing, speech sound production, and the aesthetic effect. Therefore, it is important to diagnose and treat these patients precisely. The main aim of this study is to introduce new classification methods for skeletal class I occlusion (SCIO) and skeletal class II malocclusion (SCIIMO) among Arab patients in Israel. We conducted hierarchical clustering to detect critical trends within malocclusion classes and applied machine learning (ML) models to predict classification outcomes. Methods: This study is based on assessing the lateral cephalometric parameters from the Center for Dentistry Research and Aesthetics based in Jatt, Israel. The study involved the encoded records of 394 Arab patients with diagnoses of SCIO/SCIIMO, according to the individualized ANB of Panagiotidis and Witt. After clustering analysis, an ML model was established by evaluating the performance of different models. Results: The clustering analysis identified three distinct clusters for each skeletal class (SCIO and SCIIMO). Among SCIO clusters, the results showed that in the second cluster, retrognathism of the mandible was less severe, as represented by a lower ANB angle. In addition, the third cluster had a lower NL-ML angle, gonial angle, SN-Ba angle, and lower ML-NSL angle compared to clusters 1 and 2. Among SCIIMO clusters, the results also showed that the second cluster has less severe retrognathism of the mandible, which is represented by a lower ANB angle and Calculated_ANB and a higher SNB angle (p < 0.05). The general ML model that included all measurements for patient classification showed a classification accuracy of 0.87 in the Random Forest and the Classification and Regression Tree models. Using ANB angle and Wits appraisal only in the ML, an accuracy of 0.78 (sensitivity = 0.80, specificity = 0.76) was achieved to classify patients as SCIO or SCIIMO. Conclusions: The clustering analysis revealed distinguished patterns that can be present within SCIO and SCIIMO patients, which can affect the diagnosis and treatment plan. In addition, the ML model can accurately diagnose SCIO/SCIIMO patients, which should improve precise diagnostics. Full article