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27 pages, 12878 KiB  
Article
A New Extensible Feature Matching Model for Corrosion Defects Based on Consecutive In-Line Inspections and Data Clustering
by Mohamad Shatnawi and Péter Földesi
Appl. Sci. 2025, 15(6), 2943; https://doi.org/10.3390/app15062943 (registering DOI) - 8 Mar 2025
Viewed by 309
Abstract
Corrosion is considered a leading cause of failure in pipeline systems. Therefore, frequent inspection and monitoring are essential to maintain structural integrity. Feature matching based on in-line inspections (ILIs) aligns corrosion data across inspections, facilitating the observation of corrosion progression. Nonetheless, the uncertainties [...] Read more.
Corrosion is considered a leading cause of failure in pipeline systems. Therefore, frequent inspection and monitoring are essential to maintain structural integrity. Feature matching based on in-line inspections (ILIs) aligns corrosion data across inspections, facilitating the observation of corrosion progression. Nonetheless, the uncertainties of inspection tools and corrosion processes present in ILI data influence feature matching accuracy. This study proposes a new extensible feature matching model based on consecutive ILIs and data clustering. By dynamically segmenting the data into spatially localized clusters, this framework enables feature matching of isolated pairs and merging defects, as well as facilitating more precise localized transformations. Moreover, a new clustering technique—directional epsilon neighborhood clustering (DENC)—is proposed. DENC utilizes spatial graph structures and directional proximity thresholds to address the directional variability in ILI data while effectively identifying outliers. The model is evaluated on six pipeline segments with varying ILI data complexities, achieving high recall and precision of 91.5% and 98.0%, respectively. In comparison to exclusively point matching models, this work demonstrates significant improvements in terms of accuracy, stability, and managing the spatial variability and interactions of adjacent defects. These advancements establish a new framework for automated feature matching and contribute to enhanced pipeline integrity management. Full article
Show Figures

Figure 1

Figure 1
<p>Fragments of an internally corroded pipe, illustrating metal loss and wall thinning caused by corrosion. These images are sourced from the research conducted by Beben and Steliga [<a href="#B9-applsci-15-02943" class="html-bibr">9</a>].</p>
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<p>Illustration of affine transformation on a two-dimensional plane, demonstrating how translation, scaling, and rotation facilitate correspondence between moving and reference sets.</p>
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<p>Pipeline segmentation as proposed by Dann and Dann [<a href="#B13-applsci-15-02943" class="html-bibr">13</a>].</p>
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<p>Pipeline unrolling and moving set double unrolling as proposed by Dann and Dann [<a href="#B13-applsci-15-02943" class="html-bibr">13</a>]—example problem.</p>
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<p>Identification of mixed nearest neighbors using Voronoi tessellations as proposed by Amaya-Gómez et al. [<a href="#B10-applsci-15-02943" class="html-bibr">10</a>] using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.11 m—example problem.</p>
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<p>Two-dimensional presentation of features (length and width), illustrating how interaction between adjacent defects and corrosion variable growth challenge feature matching and influence defect positioning across inspections—example problem.</p>
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<p>Illustration of the matching problems the proposed framework aims to solve, demonstrating how clustering should facilitate isolated correspondence matching, merging defect matching, and localized transformation problems across ILIs.</p>
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<p>Illustration of the proposed model’s workflow and extensibility, highlighting its parameters, data clustering using DENC and DBSCAN, cluster classification into categories, distance-based filtering, point matching using the Voronoi model, and the process of identifying matching and outlier features.</p>
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<p>Establishing adjacency relationships in DENC based on boundaries defined by the directional proximity thresholds <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.300 m and <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.150 m—example problem.</p>
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<p>Graphical representation of the directed edges and binary adjacency matrix in DENC using <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.300 m and <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.150 m—example problem.</p>
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<p>Clusters (represented by distinct colors) and outliers obtained using DENC with <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.300 m and <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.150 m—example problem.</p>
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<p>Outlier and cluster classification, illustrating the four density-based categories: (1) one-to-one, (2) one-to-many, (3) many-to-one, and many-to-many—example problem.</p>
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<p>Feature matching results obtained by the proposed model using <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.300 m, <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.150 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, α = 0.010, and τ = 0.001—example problem.</p>
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<p>Feature matching results obtained by the Voronoi model [<a href="#B10-applsci-15-02943" class="html-bibr">10</a>] using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> = 0.020, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—example problem.</p>
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<p>Illustration of the pipeline inspection setup from the manned wellhead platform to the unmanned wellhead platform.</p>
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<p>Two-dimensional presentation (length and width) of all features across the six pipeline segments, S1 to S6—case study.</p>
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<p>Sensitivity of the Voronoi model [<a href="#B7-applsci-15-02943" class="html-bibr">7</a>] to outlier proportion parameter <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Sensitivity of the Voronoi model [<a href="#B7-applsci-15-02943" class="html-bibr">7</a>] to defect’s position uncertainty threshold <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> = 0.080 and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Sensitivity of the proposed model to DENC’s directional proximity thresholds <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> = 0.080, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Sensitivity of the proposed model to outlier proportion parameter <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.220 m, <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Sensitivity of the proposed model to the merging distance threshold <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.220 m, <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> = 0.043 m, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Sensitivity of the proposed DBSCAN-based alternative model to the proximity threshold <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> = 0.080, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
Full article ">Figure 23
<p>Sensitivity of the proposed DBSCAN-based alternative model to outlier proportion parameter <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Sensitivity of the proposed DBSCAN-based alternative model to the merging distance threshold <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">λ</mi> </mrow> </semantics></math> using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">δ</mi> </mrow> </semantics></math> = 0.110 m, <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">α</mi> </mrow> </semantics></math> = 0.055, and <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">τ</mi> </mrow> </semantics></math> = 0.001—case study.</p>
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<p>Feature clustering (represented by distinct colors) using DBSCAN (top) and DENC (bottom) using <math display="inline"><semantics> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> </semantics></math> = 0.250 m, <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">x</mi> </mrow> </msub> </mrow> </semantics></math> = 0.220 m, and <math display="inline"><semantics> <mrow> <msub> <mrow> <mi mathvariant="sans-serif">ε</mi> </mrow> <mrow> <mi mathvariant="normal">y</mi> </mrow> </msub> </mrow> </semantics></math> = 0.110 m—case study for segment S5.</p>
Full article ">
16 pages, 1186 KiB  
Article
Association Between Disease Activity of Systemic Lupus Erythematosus and Resting Electrocardiogram Abnormalities
by Lin Wu, Changlin Zhao, Jingjing Chen, Li Xu, Xianguan Yu, Xinghua Guo, Zhiming Lin, Xiaoying Xie, Bin Zhou and Yong Liu
J. Clin. Med. 2025, 14(6), 1799; https://doi.org/10.3390/jcm14061799 - 7 Mar 2025
Viewed by 56
Abstract
Objective: The association between the activity of SLE and abnormalities of ECG remains not well elucidated. We aimed to examine the relationship between the SLE Disease Activity Index 2000 (SLEDAI-2K) and abnormalities of ECG in a Chinese population. Methods: Data for this cross-sectional [...] Read more.
Objective: The association between the activity of SLE and abnormalities of ECG remains not well elucidated. We aimed to examine the relationship between the SLE Disease Activity Index 2000 (SLEDAI-2K) and abnormalities of ECG in a Chinese population. Methods: Data for this cross-sectional study were retrieved from an SLE database (2018–2023). According to the SLEDAI-2K, patients were categorized into inactive, mild activity, moderate activity, and severe activity groups. Weighted multivariable regression analyses and subgroup analyses were conducted to assess the independent relationship between the SLEDAI-2K and ECG abnormalities. Restricted cubic splines (RCSs) were employed to explore potential non-linear correlations. Results: A total of 317 SLE patients (282 women; mean age 30.0 [23.0; 43.0]) were included. The overall prevalence of ST segment changes and T wave abnormalities was 37.5%. Our findings indicated a linear relationship between the SLEDAI-2K and the risk of ST-T changes. We used interaction terms to assess heterogeneity among subgroups and discovered significant differences specifically related to female gender, age (≤25 years), combined autoimmune diseases, and infectious complications. This suggested that the positive association between the SLEDAI-2K and ST-T changes was influenced by participants’ gender, age, presence of combined autoimmune diseases, and infectious complications. Conclusions: Higher SLEDAI-2K scores were associated with an increased incidence of ST-T changes in SLE patients. The SLEDAI-2K is anticipated to emerge as an effective index for identifying early heart involvement in this population. Full article
(This article belongs to the Section Cardiology)
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Figure 1

Figure 1
<p>Flowchart of the sample selection from the SLE dataset.</p>
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<p>The restricted cubic spline (RCS) analyses of the SLEDAI-2K and the different types of ECG abnormalities. (<b>A</b>) The restricted cubic spline (RCS) analysis of the SLEDAI-2K and the risk of ST-T changes. (<b>B</b>) The restricted cubic spline (RCS) analysis of the SLEDAI-2K and the risk of atrial arrhythmia and ventricular arrhythmia. (<b>C</b>) The restricted cubic spline (RCS) analysis of the SLEDAI-2K and the risk of sinus arrhythmia. (<b>D</b>) The restricted cubic spline (RCS) analysis of the SLEDAI-2K and the risk of atrioventricular block. (<b>E</b>) The restricted cubic spline (RCS) analysis of the SLEDAI-2K and the risk of other types of ECG abnormalities.</p>
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<p>Subgroup analyses of the association between the SLEDAI-2K and the risk of ST-T changes, atrial arrhythmia and ventricular arrhythmia, sinus arrhythmia, atrioventricular block, and other types of ECG abnormalities. (<b>A</b>) Subgroup analysis of the association between the SLEDAI-2K and the risk of ST-T changes. (<b>B</b>) Subgroup analysis of the association between the SLEDAI-2K and the risk of atrial arrhythmia and ventricular arrhythmia. (<b>C</b>) Subgroup analysis of the association between the SLEDAI-2K and the risk of sinus arrhythmia. (<b>D</b>) Subgroup analysis of the association between the SLEDAI-2K and the risk of atrioventricular block. (<b>E</b>) Subgroup analysis of the association between the SLEDAI-2K and other types of ECG abnormalities.</p>
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30 pages, 7677 KiB  
Article
A Muscle-Driven Spine Model for Predictive Simulations in the Design of Spinal Implants and Lumbar Orthoses
by Robin Remus, Andreas Lipphaus, Marisa Ritter, Marc Neumann and Beate Bender
Bioengineering 2025, 12(3), 263; https://doi.org/10.3390/bioengineering12030263 - 6 Mar 2025
Viewed by 220
Abstract
Knowledge of realistic loads is crucial in the engineering design process of medical devices and for assessing their interaction with the spinal system. Depending on the type of modeling, current numerical spine models generally either neglect the active musculature or oversimplify the passive [...] Read more.
Knowledge of realistic loads is crucial in the engineering design process of medical devices and for assessing their interaction with the spinal system. Depending on the type of modeling, current numerical spine models generally either neglect the active musculature or oversimplify the passive structural function of the spine. However, the internal loading conditions of the spine are complex and greatly influenced by muscle forces. It is often unclear whether the assumptions made provide realistic results. To improve the prediction of realistic loading conditions in both conservative and surgical treatments, we modified a previously validated forward dynamic musculoskeletal model of the intact lumbosacral spine with a muscle-driven approach in three scenarios. These exploratory treatment scenarios included an extensible lumbar orthosis and spinal instrumentations. The latter comprised bisegmental internal spinal fixation, as well as monosegmental lumbar fusion using an expandable interbody cage with supplementary posterior fixation. The biomechanical model responses, including internal loads on spinal instrumentation, influences on adjacent segments, and effects on abdominal soft tissue, correlated closely with available in vivo data. The muscle forces contributing to spinal movement and stabilization were also reliably predicted. This new type of modeling enables the biomechanical study of the interactions between active and passive spinal structures and technical systems. It is, therefore, preferable in the design of medical devices and for more realistically assessing treatment outcomes. Full article
(This article belongs to the Special Issue Spine Biomechanics)
Show Figures

Figure 1

Figure 1
<p>Visualization of the active hybrid FE–MB MLS (musculoskeletal lumbosacral spine) model with scenario overview. The intact MLS model [<a href="#B74-bioengineering-12-00263" class="html-bibr">74</a>] was modified to replicate three treatment scenarios involving medical devices. The procedures can be categorized into surgical treatment in the form of lumbar spinal instrumentation (scenarios 1 and 2) and conservative treatment with an orthosis (scenario 3). For better visibility, the muscles on the right side of the body are hidden in scenarios 1 and 2, and the L4/5 annulus fibrosus is shown in sectional view in scenario 2.</p>
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<p>All validation setups for both spinal instrumentation scenarios using sections of the OLS (osteoligamentous lumbosacral spine) model [<a href="#B75-bioengineering-12-00263" class="html-bibr">75</a>]. Only setups marked with an asterisk (*) were used for the active MLS model. (<b>a</b>) Instrumented two-level posterior fixators [<a href="#B92-bioengineering-12-00263" class="html-bibr">92</a>] spanning from L3 to L5. Vertebra L4 is bridged in three different clinical scenarios: intact spine, after corpectomy, and after vertebrectomy. (<b>b</b>) Implantation of an interbody cage (IC) and bilateral PF (posterior fixation) for single-level spinal fusion. The intact L4/5 functional spinal unit was dissected as shown to replicate a complete bilateral facetectomy (FY) or a FY with laminectomy (LY). The nucleus pulposus was always removed (nucleotomy (NY)) for the IC and the annulus fibrosus remained intact or was entirely removed in a discectomy (DY). For visualization purposes, the annulus fibrosus is always shown in a sagittal section when the IC is implanted.</p>
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<p>Detailed view of scenario 2 of the MLS (musculoskeletal lumbar spine) model with an exploded view of the L4/5 lumbar fusion. The two subsystems [<a href="#B74-bioengineering-12-00263" class="html-bibr">74</a>,<a href="#B100-bioengineering-12-00263" class="html-bibr">100</a>] spinal muscles and osteoligamentous spine (setup w/IC + w/PF (NY + FY), <span class="html-italic">cf</span>. <a href="#bioengineering-12-00263-f002" class="html-fig">Figure 2</a>b) are shown separately on the left side. All muscles were attached to the RB bones or abdominal plate and were redirected by the cyan colored wrapping bodies in the area of the rib cage and lumbar spine. In contrast to classic musculoskeletal MB models, the mechanical relationship between RB bones were also defined by 3D FE bodies and contact conditions. All the components modeled for this purpose are shown separately on the right (setup w/IC + w/PF (NY)). Using this hybrid FE–MB modeling approach, the dynamic relationships of both RB vertebrae were highly non-linear and modularly adaptable (depending on the setup, components such as facet joints, ligaments, or PF (posterior fixation) were removed or added; <span class="html-italic">cf</span>. <a href="#bioengineering-12-00263-f002" class="html-fig">Figure 2</a>b). All nodes of the FE bodies that were attached to the RB vertebrae are visualized as black dots. These were nodes of pedicle screws, annulus, inferior articular facets, vertebral body L4, and vertebral body L5. The FE cage was placed as a contact body between the two vertebral FE bodies and was only in contact with them. For its caudal contact, the finely meshed endplate of FE vertebral body L5 can be seen. Rods were attached to pedicle screws and start and end points of the ligaments and collagen fibers to RB L4 and L5. Superior articular RB facets were in frictionless contact with the inferior articular FE facets. Note: L4/5 annulus fibrosus is shown in a sagittal section.</p>
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<p>Visualizations of the implemented material heterogeneities. (<b>a</b>) Subject-specific Young’s modulus distribution for the FE vertebral bodies L4 and L5 in anterolateral view. Vertebra L4 is cut parallel to the sagittal plane, displaying the internal elements with reduced stiffness. (<b>b</b>) Color coding of the FE elements of the embedding mesh to which different material parameters have been assigned: posterior muscle region (left), abdominal and pelvic cavity region (center), and abdominal wall region (right). In all views, the right side of the body is at the front, the left view is posterior-lateral and the central and right view is anterior-lateral. (<b>c</b>) Diaphragm shell elements with distinction between muscle (red) and tendon tissue (yellow) in anterior (left) and posterior (right) view.</p>
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<p>Third scenario, in which the MLS model was extended to include the surrounding FE soft tissue of the trunk and an extensible lumbar orthosis. Three rendering properties are used to visualize different details: (<b>a</b>) Inside the transparent torso, one can see the diaphragm (yellow), which was attached to the thorax, and the skinning mesh of the spine (cyan), which was used for the internal contact calculation (spine-soft tissue). (<b>b</b>) Surface mesh of the skin that was added to the regular embedding FE mesh as a contact surface. (<b>c</b>) Faceting of the polygonal surface mesh of the skin and the FE orthosis. The applied FE orthosis is in its initial state (not tensioned).</p>
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<p>Excerpt from the simulated internal loads in the right rod of the posterior lumbar spinal fixation device (scenario 1) under pure axial compression force or pure bending moment. For validation, the simulation results were compared with in vitro measurements by Rohlmann et al. [<a href="#B36-bioengineering-12-00263" class="html-bibr">36</a>,<a href="#B90-bioengineering-12-00263" class="html-bibr">90</a>] and Wilke et al. [<a href="#B89-bioengineering-12-00263" class="html-bibr">89</a>], and in silico data by La Barbera et al. [<a href="#B26-bioengineering-12-00263" class="html-bibr">26</a>]. Only available comparison data were visualized. The fixators bridged vertebra L4 in three different clinical scenarios (<span class="html-italic">cf</span>. <a href="#bioengineering-12-00263-f002" class="html-fig">Figure 2</a>a): Intact spine (IT), after corpectomy (CY), and after vertebrectomy (VY).</p>
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<p>Exemplary visualizations of predicted stress and pressure distributions for the three scenarios: (<b>a</b>) Von Mises stress in the right rod of the fixation device in posterolateral view with the thorax in 30° flexion. Muscles on the right side are hidden. The almost stress-free sections of the rod adjacent to the clamps resulted from the attachment conditions of the rod elements. (<b>b</b>) Pressure distribution on the cranial side of the interbody cage with the thorax in 30° flexion. All components except the cage were hidden cranial to vertebra L5. (<b>c</b>) Pressure distribution under the orthosis applied with maximum tension in relaxed standing position, shown in posterolateral (left) and anterolateral (right) view. The pressure is not interpolated, and the orthosis is displayed transparently.</p>
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<p>Predicted implant loads in the MLS model for different postures from 10° extension to 30° flexion. (<b>a</b>) Two-level posterior fixators implanted in the intact spine (scenario 1, <a href="#bioengineering-12-00263-f002" class="html-fig">Figure 2</a>a). The predicted axial force components (top) and bending moments (bottom) in the left rod are shown as black symbols for the respective absolute thoracic angle. For comparison, the in vivo data from three patients with anterior fusion from the study by Rohlmann et al. [<a href="#B36-bioengineering-12-00263" class="html-bibr">36</a>] are visualized to the right of each of these. (<b>b</b>) For lumbar fusion (scenario 2), the contact forces between vertebral body L4 and the expanded cage (left), as well as the axial force components (center) and the bending moments (right) in the left rod are visualized.</p>
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<p>Summary of the predicted IDP changes for the examined postures, in each case as the ratio of instrumented spine to the results of the intact MLS model. The implanted cage replaced the nucleus of the L4/5 disc, which is why no pressure value is available. Refer to <a href="#bioengineering-12-00263-f008" class="html-fig">Figure 8</a>b for contact forces acting on the cage.</p>
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<p>Summary of the segmental rotation contributions of the motion segments L1–L2 to L5–S1 in sagittal plane. The rotation contributions are given for the five postures 10° extension (−10°) to 30° flexion (+30°) for the intact MLS model and the two scenarios with spinal instrumentations. All values are given in relation to the respective upright posture (end of phase [iii]).</p>
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<p>Predicted muscle forces given as the ratio of the modified to the intact MLS model in the same posture. Forces of iliocostalis thoracis, iliocostalis lumborum, and longissimus lumborum are combined into erector spinae (E.S.) and internus abdominis, obliquus externus abdominis, and rectus abdominis are combined into abdominal muscles (A.M.). Further individual muscle fibers were summed for multifidus (MF), psoas major (PM), and quadratus lumborum (QL). Scenarios are the spinal instrumentations (<b>a</b>) and the extension with soft tissues (ST) with (w/ orthosis) and without (w/o orthosis) lumbar orthosis (<b>b</b>).</p>
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<p>Validation of simulated ROMs of the L4/5 motion segment in intact condition, with interbody cage (w/IC), and with cage and posterior fixation (w/IC + w/PF). The absolute values for the four principal directions are compared with the in vitro data of Lund et al. [<a href="#B91-bioengineering-12-00263" class="html-bibr">91</a>] (shown as boxplots) for the same loading conditions (<a href="#bioengineering-12-00263-t002" class="html-table">Table 2</a>). Our simulation data are shown to the left of the corresponding boxplot, and the motion segment condition is color-coded. Further model variations, which are shown in <a href="#bioengineering-12-00263-f002" class="html-fig">Figure 2</a>b, are illustrated by different marker symbols. No results are visualized for DY + FY without PF, because no stable state was reached, and for variations of the condition w/IC + w/PF (lightest grey), because ROM did not differ.</p>
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25 pages, 21504 KiB  
Article
Impacts of Plant Configuration on the Outdoor Wind Comfort of Subtropical Coastal Campuses: Evidence from a Study of Quanzhou
by Jing Chen, Jiushan Zeng, Tiantian Huang, Yaolong Wang, Haosen Yang, Xiaofang Yu and Zefa Wang
Forests 2025, 16(3), 461; https://doi.org/10.3390/f16030461 - 5 Mar 2025
Viewed by 216
Abstract
Even though the interaction between plants and the outdoor wind environment has been a focus of interest for scholars from various disciplines in recent years, the relationship between campus outdoor wind comfort and plant configuration in subtropical coastal areas remains poorly understood. Using [...] Read more.
Even though the interaction between plants and the outdoor wind environment has been a focus of interest for scholars from various disciplines in recent years, the relationship between campus outdoor wind comfort and plant configuration in subtropical coastal areas remains poorly understood. Using the outdoor space of a typical subtropical coastal campus (the Donghai Campus of Quanzhou Normal University) as a case study, we explore the connection between plant configuration and outdoor wind comfort. The campus outdoor area is segmented into roads, squares, and courtyards to investigate this relationship. To achieve this goal, a 9-h fixed-point measurement method and the PHOENICS software (2016) were utilized. The following are the findings of the research: (1) Within the realm of trees, the banyan, Bischofia javanica, and kapok species exhibit a notable impact on wind speed reduction, with respective wind reduction ratios of 1.22, 1.31, and 1.29. Notably, among shrubs, waringin stands out with a wind reduction ratio of 1.83. (2) The tree + shrub + grass combination is the most effective method for reducing wind among the three plant facade configurations. Specifically, the combination of Bischofia javanica, waringin, and carpet grass has the best wind reduction effect, with a wind reduction ratio of 2.55. (3) Adding Bischofia javanica, waringin, and grass plants in areas with high wind speeds can effectively improve wind comfort. This provides directions for creating a comfortable wind environment on university campuses situated in subtropical coastal areas. Full article
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<p>(<b>a</b>) Map of China. (<b>b</b>) Map of Fujian Province. (<b>c</b>) Map showing the location of Donghai Campus of Quanzhou Normal University.</p>
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<p>(<b>a</b>) Overall plan of Donghai Campus of Quanzhou Normal University. (<b>b</b>) Map showing measurement points for the wind environment in campus outdoor spaces (A–F are wind environment detection points).</p>
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<p>Research framework.</p>
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<p>Wind environment measurement points: (<b>a</b>) main entrance square space (a–s are wind environment detection points); (<b>b</b>) courtyard space of an individual building (a–m are wind environment detection points); (<b>c</b>) solitary planting; (<b>d</b>) opposite planting; (<b>e</b>) row planting; (<b>f</b>) combination of trees, shrubs, and grasses.</p>
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<p>(<b>a</b>) LAI-2200C Plant Canopy Analyzer. (<b>b</b>) On-site measurement. (<b>c</b>) FV2200 V 2.1.1 software data analysis.</p>
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<p>Simplified 3D model: (<b>a</b>) A main entrance square space; (<b>b</b>) E single building courtyard space; (<b>c</b>) solitary plant; (<b>d</b>) opposite plant; (<b>e</b>) row plant; (<b>f</b>) tree + shrub + grass, tree + grass, and shrub + grass.</p>
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<p>(<b>a</b>) Original coordinate (a–s are wind environment detection points). (<b>b</b>) Computational domain.</p>
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<p>Linear regression plot of measured and CFD-simulated values ((<b>a</b>−<b>i</b>) correspond to the time periods of 9:00 a.m. and 5:00 p.m., respectively).</p>
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<p>(<b>a</b>) Map showing summer wind speeds without plants. (<b>b</b>) Map showing summer wind speeds with plants. (<b>c</b>) Map showing winter wind speeds without plants. (<b>d</b>) Map showing winter wind speeds with plants. (<b>e</b>) Simulation results of having or not having a plant in the wind environment during the summer and winter at the main gate square (red represents the highest wind difference and average wind speed, while green represents the lowest wind difference and average wind speed).</p>
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<p>(<b>a</b>) Map showing summer wind speeds. (<b>b</b>) Map showing winter wind speeds. (<b>c</b>) Simulation results of having or not having a plant in the wind environment during the summer and winter at the Youth Teacher Apartment (red represents the highest wind difference and average wind speed, while green represents the lowest wind difference and average wind speed).</p>
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<p>(<b>a</b>–<b>i</b>) Maps showing summer wind speeds. (<b>j</b>–<b>r</b>) Maps showing winter wind speeds. (<b>s</b>) Simulated data graph of the wind reduction for individual trees and shrubs (wind speeds at a line of sight height of 1.5 m for each tree and shrub).</p>
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<p>(<b>a</b>–<b>i</b>) Maps showing summer wind speeds. (<b>j</b>–<b>r</b>) Maps showing winter wind speeds. (<b>s</b>) Simulated data graph of wind reduction for opposite planting of trees and shrubs (wind speeds at a line of sight height of 1.5 m for opposite planting of trees and shrubs).</p>
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<p>(<b>a</b>–<b>i</b>) Maps showing summer wind speeds. (<b>j</b>–<b>r</b>) Maps showing winter wind speeds. (<b>s</b>) Simulated data graph of wind reduction for row planting of trees and shrubs (wind speed at a line of sight height of 1.5 m for row planting of trees and shrubs).</p>
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<p>(<b>a</b>–<b>g</b>) Maps showing summer wind speeds. (<b>h</b>–<b>n</b>) Maps showing winter wind speeds. (<b>o</b>) Simulated data graph of wind reduction for seven plant facade configuration models (wind speed at a line of sight height of 1.5 m).</p>
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<p>Vertical and side schematic diagrams of ventilation, wind blocking, and wind guidance for <span class="html-italic">Bischofia javanica</span> + waringin + grass plant configuration: (<b>a</b>) front elevation view; (<b>b</b>) side elevation view.</p>
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<p>(<b>a</b>) Optimization plan for the plant configuration for the Youth Teacher Apartment. (<b>b</b>) Comparison of wind speed at measurement points before and after optimization in the summer and winter for the Youth Teacher Apartment.</p>
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16 pages, 4769 KiB  
Article
Effects of Lactiplantibacillus-plantarum-ZG7-Fermented Feed on Laying-Hen Productivity and Intestinal Health
by Zhaolong Li, Wenjing Liu, Huini Wu, Song Peng, Mengshi Zhao, Fengqiang Lin and Lu Zhao
Fermentation 2025, 11(3), 123; https://doi.org/10.3390/fermentation11030123 - 4 Mar 2025
Viewed by 212
Abstract
The improvement in poultry production performance varies with different microbial strains used in fermented feed. This study investigates the efficacy of Lactiplantibacillus-plantarum-ZG7-fermented feed (ZG7-FF) on the productivity of laying hens. Results indicated that ZG7-FF significantly reduced the daily feed intake while increasing [...] Read more.
The improvement in poultry production performance varies with different microbial strains used in fermented feed. This study investigates the efficacy of Lactiplantibacillus-plantarum-ZG7-fermented feed (ZG7-FF) on the productivity of laying hens. Results indicated that ZG7-FF significantly reduced the daily feed intake while increasing egg weight and decreasing the feed-to-egg ratio during peak production (p < 0.05), in addition to enhancing the late-phase laying rate (p < 0.05). Further intestinal morphological results showed that ZG7-FF significantly increased the length of villi in each intestinal segment, most significantly in the duodenum and jejunum (p < 0.01). ZG7-FF also significantly increased the abundance of the phylum Desulfobacterota, while showing a notable increase in the abundance of Cyanobacteria. Conversely, there was a significant reduction in the abundance of intestinal Firmicutes (p < 0.05), specifically Limosilactobacillus and Ligilactobacillus. The LEfSe (LDA Effect Size) analysis indicated that the differential species in the duodenum associated with ZG7-FF are primarily Bifidobacteriales and Aeriscardovia. In contrast, the jejunum is predominantly composed of Cyanobacteria, while the colon is mainly characterized by Enterococcus. Non-targeted metabolomics revealed that ZG7-FF drives the suppression of key metabolites, including 3-hydroxybutyric acid, ethylnitronate, 6-chlorocoumarin-3-carboxylic acid, lotaustralin, and oleoylcarnitine, while enriching pathways related to amino acid metabolism. The downregulated metabolites were functionally linked to ABC transporters and neuroactive ligand–receptor interactions. Correlation analyses demonstrated positive associations between Limosilactobacillus/Ligilactobacillus and suppressed metabolites, whereas Enterococcus and chloroplast-related taxa exhibited negative correlations. In summary, the administration of ZG7-FF significantly enhances intestinal morphology, reduces feed intake, increases egg weight, decreases ingredient usage, elevates the abundance of intestinal Enterococcus, and diminishes the overall microbial load. Full article
(This article belongs to the Section Probiotic Strains and Fermentation)
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<p>Impact of ZG7-FF on the gut microbiota of laying hens. (<b>A</b>) Principal component analysis (PCA) of microbial communities across intestinal segments. (<b>B</b>) Top 10 phylum-level microbial abundances in different intestinal segments. (<b>C</b>) Top 30 genus-level microbial abundances in different intestinal segments. (<b>D</b>–<b>M</b>) Microbial taxa at phylum and genus levels showing distinct or trending differences across intestinal segments.</p>
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<p>LEfSe (LDA Effect Size) analysis of structural changes in gut microbiota of laying hens fed ZG7-<span class="html-italic">FF</span>. (<b>A</b>) Phylogenetic cladogram from LEfSe results displays microbial taxa with intergroup differences across taxonomic levels (phylum to genus). Red and green nodes represent taxa significantly enriched in respective groups, while yellow nodes indicate non-significant taxa. (<b>B</b>) Bar plot of LDA scores (&gt;2.0) highlighting taxa with significant differential abundances between groups; bar length reflects the effect size (LDA score).</p>
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<p>OPLS–DA score plots. (<b>A</b>–<b>D</b>) and permutation test results (<b>E</b>–<b>H</b>) of gut-content metabolites in laying hens (positive ion mode) between ZG7-fermented feed and control groups.</p>
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<p>Differential metabolites in gut contents of laying hens between ZG7-<span class="html-italic">FF</span> and control groups. (<b>A</b>–<b>D</b>) Volcano plots of differentially expressed metabolites, with red and blue dots indicating upregulated and downregulated metabolites, respectively. (<b>E</b>–<b>H</b>) KEGG pathway classification of differential metabolites. The x-axis shows the percentage of annotated metabolites per pathway, and the y-axis lists enriched KEGG pathways.</p>
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<p>Heatmap of differential metabolites. (<b>A</b>) Shared and unique metabolite categories across samples. (<b>B</b>) Heatmap illustrating relative abundance of differential metabolites. Red indicates higher abundance, blue indicates lower abundance. Rows represent metabolites, columns represent samples.</p>
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<p>Correlation analysis between differential gut microbiota and metabolites. Heatmap colors denote correlation strength (red: positive; blue: negative). Asterisks (*) indicate significance levels: * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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28 pages, 72675 KiB  
Article
Geochemical and Isotopic Features of Geothermal Fluids Around the Sea of Marmara, NW Turkey
by Francesco Italiano, Heiko Woith, Luca Pizzino, Alessandra Sciarra and Cemil Seyis
Geosciences 2025, 15(3), 83; https://doi.org/10.3390/geosciences15030083 - 1 Mar 2025
Viewed by 232
Abstract
Investigations carried out on 72 fluid samples from 59 sites spread over the area surrounding the Sea of Marmara show that their geochemical and isotopic features are related to different segment settings of the North Anatolian Fault Zone (NAFZ). We collected fluids from [...] Read more.
Investigations carried out on 72 fluid samples from 59 sites spread over the area surrounding the Sea of Marmara show that their geochemical and isotopic features are related to different segment settings of the North Anatolian Fault Zone (NAFZ). We collected fluids from thermal and mineral waters including bubbling and dissolved gases. The outlet temperatures of the collected waters ranged from 14 to 97 °C with no temperature-related geochemical features. The free and dissolved gases are a mixture of shallow and mantle-derived components. The large variety of geochemical features comes from intense gas–water (GWI) and water–rock (WRI) interactions besides other processes occurring at relatively shallow depths. CO2 contents ranging from 0 to 98.1% and helium isotopic ratios from 0.11 to 4.43 Ra indicate contributions, variable from site to site, of mantle-derived volatiles in full agreement with former studies on the NAFZ. We propose that the widespread presence of mantle-derived volatiles cannot be related only to the lithospheric character of the NAFZ branches and magma intrusions have to be considered. Changes in the vertical permeability induced by fault movements and stress accumulation during seismogenesis, however, modify the shallow/deep ratio of the released fluids accordingly, laying the foundations for future monitoring activities. Full article
(This article belongs to the Section Geochemistry)
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<p>Map of historic earthquakes in the wider Marmara region compiled from various sources [<a href="#B17-geosciences-15-00083" class="html-bibr">17</a>,<a href="#B18-geosciences-15-00083" class="html-bibr">18</a>,<a href="#B19-geosciences-15-00083" class="html-bibr">19</a>,<a href="#B20-geosciences-15-00083" class="html-bibr">20</a>]. Labels indicate the year of the event for magnitudes M ≥ 7. White lines depict active faults according to the General Directorate of Mineral Research and Exploration (MTA) [<a href="#B21-geosciences-15-00083" class="html-bibr">21</a>]; off-shore faults are taken from Armijo et al. (2002) [<a href="#B14-geosciences-15-00083" class="html-bibr">14</a>]. Orange and red lines indicate the ruptures related to the Ganos earthquake of 1912 and the Izmit/Düzce events of 1999, respectively.</p>
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<p>Map of fluid sampling sites around the Sea of Marmara. Symbols indicate color-coded water temperatures. Small white circles depict sites with bubbling gases. Values are sample numbers used in this study (see <a href="#geosciences-15-00083-t001" class="html-table">Table 1</a>). Names of geographic areas investigated are given.</p>
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<p>Piper diagram of the water samples as a function of the geographical areas. Sample labels as the ID numbers in <a href="#geosciences-15-00083-t002" class="html-table">Table 2</a>.</p>
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<p>Ca vs Mg (<b>a</b>) and HCO<sub>3</sub> (<b>b</b>). The occurrence of GWI processes allows CO<sub>2</sub> dissolution that is responsible for the observed geochemical features related to WRI resulting in dolomite and calcite dissolution to various extents. Sample labels are the same as the ID numbers in <a href="#geosciences-15-00083-t002" class="html-table">Table 2</a>.</p>
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<p>Na vs HCO<sub>3</sub> (<b>a</b>) and Na vs. Cl (<b>b</b>). The occurrence of WRI and GWI processes is responsible for the observed geochemical features. Blue star symbol = sea water. Sample labels are the same as the ID numbers in <a href="#geosciences-15-00083-t002" class="html-table">Table 2</a>. Symbol colors are as shown in <a href="#geosciences-15-00083-f003" class="html-fig">Figure 3</a>.</p>
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<p>Ca-SO<sub>4</sub> plot showing that gypsum dissolution is not the main process responsible for the SO<sub>4</sub> ions, with the water chemistry being a consequence of WRI and GWI processes. Sample labels are the same as the ID numbers in <a href="#geosciences-15-00083-t002" class="html-table">Table 2</a>. SW = sea water.</p>
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<p>δ<sup>18</sup>O–δD plot for the collected waters. Samples fall between the two reference lines representing the EMMWL (Eastern Mediterranean Meteoric Water Line; Hatvani et al., 2023 [<a href="#B62-geosciences-15-00083" class="html-bibr">62</a>]) and the GMWL (Global Meteoric Water Line; Rozanski et al., 1993 [<a href="#B63-geosciences-15-00083" class="html-bibr">63</a>]). BMWL refers to the Bursa local meteoric water line proposed by Imbach et al. (1997) [<a href="#B38-geosciences-15-00083" class="html-bibr">38</a>]. Sample labels are the same as the ID numbers in <a href="#geosciences-15-00083-t002" class="html-table">Table 2</a>.</p>
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<p>CO<sub>2</sub>-N<sub>2</sub> relationships for bubbling (filled circles) and dissolved (diamond) gases indicating the presence of two end members in the gas phase, namely the shallow atmospheric-derived N<sub>2</sub> component and the deep-originated CO<sub>2</sub>, vented over the Marmara area that mix at variable extents. Numbers indicate the sample IDs as in <a href="#geosciences-15-00083-t001" class="html-table">Table 1</a>.</p>
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<p>CO<sub>2</sub>-CH<sub>4</sub>-N<sub>2</sub> triangular diagram of the bubbling (filled circles) and dissolved (diamonds) gases showing the relative contents of the three end members N<sub>2</sub>, CO<sub>2</sub> and CH<sub>4</sub>. We plotted the N<sub>2</sub> excess with respect to the atmospheric nitrogen. The arrows highlight the GWI processes (CO<sub>2</sub> loss and increased N<sub>2</sub> and CH<sub>4</sub> contents) as well as mixings due to CO<sub>2</sub> addition from various sources that significantly changed the composition of the pristine gas phase. The numbers beside the symbols indicate the site as listed in <a href="#geosciences-15-00083-t001" class="html-table">Table 1</a>.</p>
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<p>CO<sub>2</sub> content vs δ<sup>13</sup>C<sub>CO2</sub> for the bubbling gases (<b>a</b>) and for δ<sup>13</sup>C<sub>TDIC</sub> of the dissolved gases (<b>b</b>). The plots depict a clear direct correlation between isotopic ratios and CO<sub>2</sub> and HCO<sub>3</sub> contents. The contemporary trends denote the fractionation with quantitative loss of gaseous CO<sub>2</sub> and its heavy isotope as well as the occurrence of further fractionation processes. The occurrence of similar trends followed by samples from different sites around the Marmara area suggests that the vented CO<sub>2</sub> is not solely controlled by shallow interactions with groundwaters, and that the coexistence of multiple sources has to be considered.</p>
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<p>Helium isotopic ratios (uncorrected R/Ra values) and <sup>4</sup>He/<sup>20</sup>Ne relationships for both dissolved and bubbling gases. The theoretical lines represent binary mixing trends of atmospheric helium with mantle-originated and crustal helium. The assumed end members for He-isotopic ratios and <sup>4</sup>He/<sup>20</sup>Ne ratios are ASW (1 Ra, He/Ne = 0.267: Holocer et al., 2002) [<a href="#B49-geosciences-15-00083" class="html-bibr">49</a>]; 8Ra for a MORB-type mantle; and 3.5 Ra for contaminated mantle; crust 0.05Ra and <sup>4</sup>He/<sup>20</sup>Ne ratio = 10,000. Filled circles = bubbling gases; filled diamonds = dissolved gases. Sample IDs are as reported in <a href="#geosciences-15-00083-t003" class="html-table">Table 3</a>. All error bars are within the symbol size.</p>
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<p>CO<sub>2</sub>/<sup>3</sup>He–<sup>4</sup>He. The plot shows how the vented gases are a mixture of two main components: magmatic-type and crustal-originated. Circles = bubbling gases; diamonds = dissolved gases. The arrows display the main trends affecting the composition of the gas phase.</p>
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<p>Map showing locations mentioned in the text. Numbers refer to sampling sites of this study (see <a href="#geosciences-15-00083-t001" class="html-table">Table 1</a>).</p>
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<p>Chemical composition of thermal and mineral waters around the Sea of Marmara. The diameter of the pies scales with the specific electrical conductivity of the waters. Small circles in the centre of the pies indicate the water temperature: blue—cold (&lt;20 °C); orange—hot (&gt;40 °C).</p>
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<p>Gas composition of thermal and mineral waters around the Sea of Marmara. Small white circles in the centre of the pies indicate bubbling gases.</p>
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<p>Helium isotope ratios given in R/Ra at mineral and thermal waters around the Sea of Marmara. Light purple areas depict Tertiary volcanic rocks, hatched areas mark intrusive igneous rocks of Paleozoic to Cenozoic age. Light and dark gray areas indicate Mesozoic and Paleozoic rocks, respectively. White areas are Paleogene to Quaternary sediments. Simplified geology modified from Pawlewicz et al. (1997) [<a href="#B83-geosciences-15-00083" class="html-bibr">83</a>].</p>
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17 pages, 1912 KiB  
Protocol
Tn5-Labeled DNA-FISH: An Optimized Probe Preparation Method for Probing Genome Architecture
by Yang Yang, Gengzhan Chen, Tong Gao, Duo Ning, Yuqing Deng, Zhongyuan (Simon) Tian and Meizhen Zheng
Int. J. Mol. Sci. 2025, 26(5), 2224; https://doi.org/10.3390/ijms26052224 - 28 Feb 2025
Viewed by 263
Abstract
Three-dimensional genome organization reveals that gene regulatory elements, which are linearly distant on the genome, can spatially interact with target genes to regulate their expression. DNA fluorescence in situ hybridization (DNA-FISH) is an efficient method for studying the spatial proximity of genomic loci. [...] Read more.
Three-dimensional genome organization reveals that gene regulatory elements, which are linearly distant on the genome, can spatially interact with target genes to regulate their expression. DNA fluorescence in situ hybridization (DNA-FISH) is an efficient method for studying the spatial proximity of genomic loci. In this study, we developed an optimized Tn5 transposome-based DNA-FISH method, termed Tn5-labeled DNA-FISH. This approach amplifies the target region and uses a self-assembled Tn5 transposome to simultaneously fragment the DNA into ~100 bp segments and label it with fluorescent oligonucleotides in a single step. This method enables the preparation of probes for regions as small as 4 kb and visualizes both endogenous and exogenous genomic loci at kb resolution. Tn5-labeled DNA-FISH provides a streamlined and cost-effective tool for probe generation, facilitating the investigation of chromatin spatial conformations, gene interactions, and genome architecture. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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<p>The overall workflow of Tn5-labeled DNA-FISH is illustrated. (<b>A</b>) The target genomic region is amplified by PCR with specific primers. (<b>B</b>) Fluorescently labeled adaptors (ME) are synthesized and annealed, with the Cy5.5 fluorophore indicated by the red star. ME_A (dark blue) or ME_B (blue) is annealed with ME (light blue) to form Adaptor A and Adaptor B, respectively. The blue bars correspond to the DNA sequences of the oligonucleotides. (<b>C</b>) The fluorescently labeled adaptors are assembled with Tn5 transposase to form the Tn5-labeled transposome. (<b>D</b>) The Tn5-labeled transposome performs fragmentation on the target genomic DNA, simultaneously fragmenting the DNA and integrating the fluorescently labeled adaptors to generate labeled probes. (<b>E</b>) The labeled probes are then used for DNA-FISH experiments.</p>
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<p>Amplification of target genomic loci. (<b>A</b>) PCR amplification of the target locus <span class="html-italic">l(1)G0020</span> on the <span class="html-italic">Drosophila</span> X chromosome using S2 genomic DNA as the template. (<b>B</b>) PCR amplification of the target locus from the EBV genome (B95-8 strain) using GM12878 genomic DNA containing the EBV genome as the template. In both (<b>A</b>,<b>B</b>), the top bars represent the chromosome, the dashed line indicates the region of interest, blue bars represent negative-strand genes, and green bars represent positive-strand genes, the black arrows indicate the target amplification regions. Capillary electrophoresis confirms the presence of single, specific amplicons (red arrows), with the purple peak representing the marker.</p>
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<p>Fluorescently labeled adaptor synthesis, assembly, and probe size determination. (<b>A</b>) PAGE gel analysis of Adaptor A (ME and ME_A) and Adaptor B (ME and ME_B) annealing. The Cy5.5 fluorophore is shown in red. ME_A (dark blue) or ME_B (blue) is annealed with ME (light blue) to form Adaptor A and Adaptor B, respectively. The annealing of ME and ME_A/ME_B oligos at a molar ratio of 1:1.1 resulted in slower migration and distinct, specific bands, indicating successful annealing with the correct proportions. The white line indicated a splicing between ME_B lane and marker lane. (<b>B</b>) DNA fragment size distribution after Tn5-labeled transposome-mediated fragmentation of the <span class="html-italic">Drosophila l</span>(<span class="html-italic">1</span>)<span class="html-italic">G0020</span> locus amplicon. (<b>C</b>) DNA fragment size distribution after Tn5-labeled transposome-mediated fragmentation of the EBV fragment amplicon. In both (<b>B</b>,<b>C</b>), the DNA fragments are predominantly around 150 bp, with red arrows indicating the peak positions and the purple peak representing the marker.</p>
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<p>Application of Tn5-labeled DNA-FISH for imaging endogenous and exogenous genomic loci. (<b>A</b>) Tn5-labeled probes targeting the <span class="html-italic">Drosophila</span> X chromosome <span class="html-italic">l(1)G0020</span> locus were hybridized with Kc167 cells (female with two X chromosomes) and S2 cells (male with one X chromosome). DNA-FISH results show two foci in Kc167 cells and one focus in S2 cells, consistent with the localization of the target region on the X chromosome. Probes for <span class="html-italic">l(1)G0020</span> are labeled in red (Cy5.5), and nuclei are stained with DAPI (blue). (<b>B</b>) Tn5-labeled probes targeting the EBV genome were hybridized with RAMOS cells (EBV-negative) and GM12878 cells (EBV-positive). DNA-FISH results show multiple EBV episomes in GM12878 cells, while no fluorescence signal is detected in RAMOS cells, demonstrating high probe specificity. Probes for the EBV genome are labeled in red (Cy5.5), and nuclei are stained with DAPI (blue).</p>
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24 pages, 3727 KiB  
Article
Experimental Design (24) to Improve the Reaction Conditions of Non-Segmented Poly(ester-urethanes) (PEUs) Derived from α,ω-Hydroxy Telechelic Poly(ε-caprolactone) (HOPCLOH)
by Jaime Maldonado-Estudillo, Rodrigo Navarro Crespo, Ángel Marcos-Fernández, María Dolores de Dios Caputto, Gustavo Cruz-Jiménez and José E. Báez
Polymers 2025, 17(5), 668; https://doi.org/10.3390/polym17050668 - 28 Feb 2025
Viewed by 310
Abstract
Aliphatic unsegmented polyurethanes (PUs) have garnered relatively limited attention in the literature, despite their valuable properties such as UV resistance and biocompatibility, making them suitable for biomedical applications. This study focuses on synthesizing poly(ester-urethanes) (PEUs) using 1,6-hexamethylene diisocyanate and the macrodiol α,ω-hydroxy telechelic [...] Read more.
Aliphatic unsegmented polyurethanes (PUs) have garnered relatively limited attention in the literature, despite their valuable properties such as UV resistance and biocompatibility, making them suitable for biomedical applications. This study focuses on synthesizing poly(ester-urethanes) (PEUs) using 1,6-hexamethylene diisocyanate and the macrodiol α,ω-hydroxy telechelic poly(ε-caprolactone) (HOPCLOH). To optimize the synthesis, a statistical experimental design approach was employed, a methodology not commonly utilized in polymer science. The influence of reaction temperature, time, reagent concentrations, and solvent type on the resulting PEUs was investigated. Characterization techniques included FT-IR, 1H NMR, differential scanning calorimetry (DSC), gel permeation chromatography (GPC), optical microscopy, and mechanical testing. The results demonstrated that all factors significantly impacted the number-average molecular weight (Mn) as determined by GPC. Furthermore, the statistical design revealed crucial interaction effects between factors, such as a dependence between reaction time and temperature. For example, a fixed reaction time of 1 h, with the temperature varying from 50 °C to 61 °C, did not significantly alter Mn. Better reaction conditions yielded high Mn (average: 162,000 g/mol), desirable mechanical properties (elongation at break > 1000%), low levels of unreacted HOPCLOH in the PEU films (OH/ESTER response = 0.0008), and reduced crystallinity (ΔHm = 11 J/g) in the soft segment, as observed by DSC and optical microscopy. In contrast, suboptimal conditions resulted in low Mn, brittle materials with unmeasurable mechanical properties, high crystallinity, and significant amounts of residual HOPCLOH. The best experimental conditions were 61 °C, 0.176 molal, 8 h, and chloroform as the solvent (ε = 4.8). Full article
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Graphical abstract

Graphical abstract
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<p>From left to right, <sup>1</sup>H NMR spectra, differential scanning calorimetry (DSC) thermograms, and optical microscopy images are displayed. Part (<b>a</b>) shows the <sup>1</sup>H NMR spectrum of the HOPCLOH precursor, part (<b>d</b>) shows the spectrum of a PEU-20 (<span class="html-italic">M</span><sub>n</sub> = 7500 g/mol) obtained with acetonitrile under the worst experimental conditions, and part (<b>g</b>) shows the spectrum of a PEU-13 (<span class="html-italic">M</span><sub>n</sub> = 171,000 g/mol) obtained with chloroform under the best experimental conditions. The following column presents the corresponding DSC thermograms: (<b>b</b>) HOPCLOH precursor, (<b>e</b>) PEU synthesized under the worst conditions, and (<b>h</b>) PEU synthesized under the best conditions. The optical micrographs are in (<b>c</b>,<b>f</b>,<b>i</b>) from HOPCLOH, PEU-20, and PEU-13, respectively.</p>
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<p>The <sup>1</sup>H NMR spectra are shown in the chemical shift region of the hydrogen in the urethane group [-O-(C=O)-N-H, singlet] for (<b>a</b>) the precursor (HOPCLOH), (<b>b</b>) PEU-20 (worst conditions), and (<b>c</b>) PEU-13 (best conditions).</p>
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<p>Three FT-IR spectra are shown: (<b>a</b>) the precursor HOPCLOH, (<b>b</b>) the PEU-13 with the highest <span class="html-italic">M</span><sub>n</sub>, and (<b>c</b>) the PEU-20 sample with the lowest <span class="html-italic">M</span><sub>n</sub>.</p>
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<p>The effect of the main factors of the model derived from the 2<sup>4</sup> factorial design. Each dot in the graphic illustrates the average of 16 experiments.</p>
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<p>(<b>a</b>) The figure presents the percentage change in <span class="html-italic">M</span><sub>n</sub> (Δ<span class="html-italic">M</span><sub>n</sub>%) corresponding to each primary effect (T, c, t, and s), as determined through the experimental design. (<b>b</b>) The figure showcases the <span class="html-italic">relative impact</span>, calculated as the ratio of Δ<span class="html-italic">M</span><sub>n</sub>% to the percentage change in each variable (ΔT%, Δc%, Δs%, and Δt%).</p>
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<p>This figure illustrates the significant and non-significant effects of the two-way interactions between the factors in the model derived from the 2<sup>4</sup> factorial design. (<b>a</b>) Temperature and molal concentration (T•c) interaction. (<b>b</b>) Temperature and time (T•t) interaction. (<b>c</b>) Molal concentration and time (c•t) interaction. (<b>d</b>) Temperature and solvent (T•s) interaction. (<b>e</b>) Molal concentration and solvent (dielectric constant) (c•s) interaction. (<b>f</b>) Time and solvent (dielectric constant) (t•s) interaction.</p>
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<p>Plot of frequency and range of <span class="html-italic">M</span><sub>n</sub> of all data from design 2<sup>4</sup>.</p>
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<p>A graph depicting the <span class="html-italic">M</span><sub>n</sub>, as determined by gel permeation chromatography (GPC), plotted against the conversion of HOPCLOH, as quantified through hydrogen nuclear magnetic resonance (<sup>1</sup>H NMR) analysis (OH/ESTER response).</p>
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<p>Main effects plot of the response Δ<span class="html-italic">H</span><sub>m</sub> with each of the factors initially considered in the 2<sup>4</sup> factorial design model. Each dot in the graphic illustrates the average of 16 experiments.</p>
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<p>The stress–strain curves of two PEU samples. The samples were synthesized using chloroform as solvent, but they differ in other synthesis factors. The red curve represents sample PEU-30 (50 °C, 0.089 molal, 8 h), and the blue curve represents sample PEU-22 (61 °C, 0.176 molal, 8 h).</p>
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<p>Reagents and reaction conditions for the synthesis of PEUs to improve the process.</p>
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16 pages, 7226 KiB  
Review
Structure of the Inhibited Smooth Muscle Myosin and Its Implications on the Regulation of Insect Striated Muscle Myosin
by Shaopeng Sun, Yi-Ning Lu and Xiang-dong Li
Life 2025, 15(3), 379; https://doi.org/10.3390/life15030379 - 27 Feb 2025
Viewed by 138
Abstract
Class II myosin (myosin-2) is an actin-based motor protein found in nearly all eukaryotes. One critical question is how the motor function of myosin-2 is regulated. Vertebrate myosin-2 comprises non-muscle myosin, smooth muscle myosin and striated muscle myosin. Recent studies have shown that [...] Read more.
Class II myosin (myosin-2) is an actin-based motor protein found in nearly all eukaryotes. One critical question is how the motor function of myosin-2 is regulated. Vertebrate myosin-2 comprises non-muscle myosin, smooth muscle myosin and striated muscle myosin. Recent studies have shown that smooth muscle myosin, in its inhibited state, adopts a folded conformation in which the two heads interact with each other asymmetrically, and the tail is folded into three segments that wrap around the two heads. It has been proposed that the asymmetric head-to-head interaction is a conserved, fundamental structure essential for the regulation of all types of myosin-2. Nearly all insects have only a single striated muscle myosin heavy chain (MHC) gene, which produces all MHC isoforms through alternative splicing of mutually exclusive exons. Most of the alternative exon-encoded regions in insect MHC are located in the motor domain and are critical for generating isoform-specific contraction velocity and force production. However, it remains unclear whether these alternative exon-encoded regions participate in the regulation of insect striated muscle myosin. Here, we review the recently resolved structure of the inhibited state of smooth muscle myosin and discuss its implications on the regulation of insect striated muscle myosin. We propose that the alternative exon-encoded regions in insect MHC not only affect motor properties but also contribute to stabilizing the folded conformation and play a crucial role in regulating insect striated muscle myosin. Full article
(This article belongs to the Section Biochemistry, Biophysics and Computational Biology)
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<p>Schematic drawing of the conformational transition of SmM and the 3D structure of the IHM of shutdown SmM. The left panel shows the conformational transition between the 6S active state and the 10S shutdown state of smooth muscle myosin. The right panel is the entire folded molecule showing IHM and the folded tail (PDB ID: 7MF3, 3.4 Å). Color code: light blue, blocked head; gray, free head; light gray, tail; light green, ELC; light pink, RLC.</p>
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<p>Diagram of the <span class="html-italic">Drosophila Mhc</span> gene and the structure of <span class="html-italic">Drosophila</span> myosin-2. (<b>A</b>) Diagram of the <span class="html-italic">Drosophila Mhc</span> gene, showing the exon–intron structure. Constitutive exons are colored in black, and alternative exons are colored. The exon usage of typical isoforms, such as embryonic muscle myosin (3a/7a/9b/11c) and indirect flight muscle myosin (3b/7d/9a/11e), is displayed. (<b>B</b>) Crystal structure of the <span class="html-italic">Drosophila</span> myosin-2 motor domain (PDB ID: 5W1A, 2.23 Å), exhibiting the alternative exon usage in embryonic muscle myosin (3a/7a/9b/11c) and indirect flight muscle myosin (3b/7d/9a/11e). The alternative regions in the structure are color-coded to correspond to the exons in the <span class="html-italic">Drosophila Mhc</span> gene. Color code: gray, motor head; light green, ELC; blue, exon 3 (N-SH3); green, exon 7 (ATP-lip); magenta, exon 9 (relay); orange, exon 11 (converter).</p>
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<p>Localization and interactions of the four alternative regions in the motor domain of <span class="html-italic">Drosophila</span> MHC. (<b>A</b>) Structure of the IHM of shutdown myosin-2, highlighting the location and the interactions of the four alternative regions. Color code: light blue, blocked head; gray, free head; light gray, the tail; light green, ELCs; light pink, RLCs; blue, exon 3 (N-SH3); green, exon 7 (ATP-lip); magenta, exon 9 (relay); orange, exon 11 (converter). (<b>B</b>) Summary of interactions involving the alternative regions in the IHM.</p>
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<p>Amino acid sequence and interaction analyses of exon 3 encoding region. (<b>A</b>) Amino acid sequence alignment of chicken smooth muscle myosin and <span class="html-italic">Drosophila</span> MHC in the regions encoded by the alternative exon 3 of the <span class="html-italic">Drosophila Mhc</span> gene. The red arrows indicate the amino acids in BH exon 3 that are involved in stabilizing the IHM. (<b>B</b>) Interactions between the BH N-SH3 and segment 2. The color coding is consistent with <a href="#life-15-00379-f003" class="html-fig">Figure 3</a>.</p>
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<p>Amino acid sequence and interaction analyses of exon 7 encoding region. (<b>A</b>) Amino acid sequence alignment of chicken smooth muscle myosin and <span class="html-italic">Drosophila</span> MHC in the regions encoded by alternative exon 7 of the <span class="html-italic">Drosophila Mhc</span> gene. The red arrow indicates the amino acid in BH exon 7 involved in stabilizing the IHM. (<b>B</b>) Interaction between the BH ATP-lip and the FH converter. The color coding is consistent with <a href="#life-15-00379-f003" class="html-fig">Figure 3</a>.</p>
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<p>Amino acid sequence and interaction analyses of exon 9 encoding region. (<b>A</b>) Amino acid sequence alignment of chicken smooth muscle myosin and <span class="html-italic">Drosophila</span> MHC in the regions encoded by alternative exon 9 of the <span class="html-italic">Drosophila Mhc</span> gene. The red arrow indicates the amino acid in BH exon 9 involved in stabilizing the IHM, and the green arrow indicates the amino acid in FH exon 9 involved in stabilizing the IHM. (<b>B</b>) Interactions between the FH relay and BH loop 4. (<b>C</b>) Interaction between the BH relay and segment 2. The color coding is consistent with <a href="#life-15-00379-f003" class="html-fig">Figure 3</a>.</p>
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<p>Amino acid sequence and interaction analyses of the exon 11 encoding region. (<b>A</b>) Amino acid sequence alignment of chicken smooth muscle myosin and <span class="html-italic">Drosophila</span> MHC in the regions encoded by alternative exon 11 of the <span class="html-italic">Drosophila Mhc</span> gene. The red arrows indicate the amino acids in BH exon 11 involved in stabilizing the IHM, the green arrows indicate the amino acids in FH exon 11 involved in stabilizing the IHM. (<b>B</b>) Interactions between the FH converter, the BH loop 4 and ATP-lip. (<b>C</b>) Interactions between the BH converter and segment 2. The color coding is consistent with <a href="#life-15-00379-f003" class="html-fig">Figure 3</a>.</p>
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30 pages, 22521 KiB  
Article
DBCA-Net: A Dual-Branch Context-Aware Algorithm for Cattle Face Segmentation and Recognition
by Xiaopu Feng, Jiaying Zhang, Yongsheng Qi, Liqiang Liu and Yongting Li
Agriculture 2025, 15(5), 516; https://doi.org/10.3390/agriculture15050516 - 27 Feb 2025
Viewed by 200
Abstract
Cattle face segmentation and recognition in complex scenarios pose significant challenges due to insufficient fine-grained feature representation in segmentation networks and limited modeling of salient regions and local–global feature interactions in recognition models. To address these issues, DBCA-Net, a dual-branch context-aware algorithm for [...] Read more.
Cattle face segmentation and recognition in complex scenarios pose significant challenges due to insufficient fine-grained feature representation in segmentation networks and limited modeling of salient regions and local–global feature interactions in recognition models. To address these issues, DBCA-Net, a dual-branch context-aware algorithm for cattle face segmentation and recognition, is proposed. The method integrates an improved TransUNet-based segmentation network with a novel Fusion-Augmented Channel Attention (FACA) mechanism in the hybrid encoder, enhancing channel attention and fine-grained feature representation to improve segmentation performance in complex environments. The decoder incorporates an Adaptive Multi-Scale Attention Gate (AMAG) module, which mitigates interference from complex backgrounds through adaptive multi-scale feature fusion. Additionally, FACA and AMAG establish a dynamic feedback mechanism that enables iterative optimization of feature representation and parameter updates. For recognition, the GeLU-enhanced Partial Class Activation Attention (G-PCAA) module is introduced after Patch Partition, strengthening salient region modeling and enhancing local–global feature interaction. Experimental results demonstrate that DBCA-Net achieves superior performance, with 95.48% mIoU and 97.61% mDSC in segmentation tasks and 95.34% accuracy and 93.14% F1-score in recognition tasks. These findings underscore the effectiveness of DBCA-Net in addressing segmentation and recognition challenges in complex scenarios, offering significant improvements over existing methods. Full article
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<p>Structural diagram of the DBCA-Net algorithm.</p>
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<p>Diagram of the Fusion-Augmented Channel Attention (FACA) mechanism architecture.</p>
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<p>Architecture of AMAG (Adaptive Multi-Scale Attention Gate).</p>
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<p>Diagram of the inter-class feature enhancement model for cattle face recognition.</p>
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<p>Diagram of the GeLU-enhanced Partial Class Activation Attention (G-PCAA) mechanism.</p>
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<p>Diagram of local class center generation and global class representation generation.</p>
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<p>Loss curve of the cattle face segmentation network for complex environments.</p>
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<p>(<b>a</b>) Loss curves of the G-PCAA-enhanced recognition network. (<b>b</b>) Accuracy curves of the G-PCAA-enhanced recognition network.</p>
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<p>(<b>a</b>) Visualization of mean Intersection over Union (mIoU) for segmentation networks. (<b>b</b>) Visualization of mean Dice Similarity Coefficient (mDSC) for segmentation networks. (<b>c</b>) Visualization of 95th Percentile Hausdorff Distance (mHD95) for segmentation networks.</p>
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<p>(<b>a</b>) Visualization of recognition accuracy across different networks. (<b>b</b>) Visualization of recognition F1-score across different networks. (<b>c</b>) Visualization of model size across different networks.</p>
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15 pages, 3171 KiB  
Article
Genome-Wide Identification, Expression, and Protein Interaction of GRAS Family Genes During Arbuscular Mycorrhizal Symbiosis in Poncirus trifoliata
by Fang Song, Chuanya Ji, Tingting Wang, Zelu Zhang, Yaoyuan Duan, Miao Yu, Xin Song, Yingchun Jiang, Ligang He, Zhijing Wang, Xiaofang Ma, Yu Zhang, Zhiyong Pan and Liming Wu
Int. J. Mol. Sci. 2025, 26(5), 2082; https://doi.org/10.3390/ijms26052082 - 27 Feb 2025
Viewed by 228
Abstract
Arbuscular mycorrhizal (AM) fungi establish mutualistic symbiosis with most land plants, facilitating mineral nutrient uptake in exchange for photosynthates. As one of the most commercially used rootstocks in citrus, Poncirus trifoliata heavily depends on AM fungi for nutrient absorption. The GRAS gene family [...] Read more.
Arbuscular mycorrhizal (AM) fungi establish mutualistic symbiosis with most land plants, facilitating mineral nutrient uptake in exchange for photosynthates. As one of the most commercially used rootstocks in citrus, Poncirus trifoliata heavily depends on AM fungi for nutrient absorption. The GRAS gene family plays essential roles in plant growth and development, signaling transduction, and responses to biotic and abiotic stresses. However, the identification and functional characterization of GRAS family genes in P. trifoliata remains largely unexplored. In this study, a comprehensive genome-wide analysis of PtGRAS family genes was conducted, including their identification, physicochemical properties, phylogenetic relationships, gene structures, conserved domains, chromosome localization, and collinear relationships. Additionally, the expression profiles and protein interaction of these genes under AM symbiosis were systematically investigated. As a result, 41 GRAS genes were identified in the P. trifoliata genome, and classified into nine distinct clades. Collinearity analysis revealed seven segmental duplications but no tandem duplications, suggesting that segmental duplication played a more important role in the expansion of the PtGRAS gene family compared to tandem duplication. Additionally, 18 PtGRAS genes were differentially expressed in response to AM symbiosis, including orthologs of RAD1, RAM1, and DELLA3 in P. trifoliata. Yeast two-hybrid (Y2H) screening further revealed that PtGRAS6 and PtGRAS20 interacted with both PtGRAS12 and PtGRAS18, respectively. The interactions were subsequently validated through bimolecular fluorescence complementation (BiFC) assays. These findings underscored the crucial role of GRAS genes in AM symbiosis in P. trifoliata, and provided valuable candidate genes for improving nutrient uptake and stress resistance in citrus rootstocks through molecular breeding approaches. Full article
(This article belongs to the Special Issue Molecular Research of Tropical Fruit (2nd Edition))
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<p>Chromosome localization of <span class="html-italic">PtGRAS</span> family genes. The text on the left represents the number of chromosomes, and the scale on the left represents the chromosome size.</p>
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<p>Phylogenetic relationships of GRAS proteins between <span class="html-italic">Poncirus trifoliata</span> (Pt), <span class="html-italic">Arabidopsis thaliana</span> (At), and <span class="html-italic">Medicago trunctula</span> (Mt). Red squares represent PtGRAS proteins, blue stars represent AtGRAS proteins, and yellow circles represent MtGRAS proteins. The phylogenetic tree was constructed by MEGA X using the Maximum Likelihood Method (1000 bootstrap). The different colors of backgrounds indicated eight clades of <span class="html-italic">GRAS</span> family genes.</p>
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<p>Conserved motifs and gene structures of <span class="html-italic">PtGRAS</span> family genes. (<b>A</b>) Conserved motifs of <span class="html-italic">PtGRAS</span> family genes using MEME algorithm. The different colors indicated 12 identified motifs. (<b>B</b>) The gene structures are based on the sequences of <span class="html-italic">PtGRAS</span> family genes. The yellow color and green color indicated CDS and UTR, and the lines indicated Intron.</p>
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<p>Collinearity analysis of <span class="html-italic">PtGRAS</span> genes. (<b>A</b>) Gray lines indicated all duplicated genes, dark lines indicated segmentally duplicated genes, and the heatmap and line graph were gene densities. (<b>B</b>) Collinearity analysis of <span class="html-italic">PtGRAS</span> genes with <span class="html-italic">A. thaliana</span> and <span class="html-italic">M. truncatula</span>. The gray lines represented all collinear pairs of <span class="html-italic">P. trifoliata</span> with <span class="html-italic">A. thaliana</span> and <span class="html-italic">M. truncatula</span> at the genome level. The black lines represented collinearity gene pairs.</p>
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<p>The expression profiles of <span class="html-italic">PtGRAS</span> genes in response to arbuscular mycorrhizal symbiosis. (<b>A</b>). Heatmap analysis of RNA-seq data. (<b>B</b>). Relative expression of qRT-PCR analysis. AM, arbuscular mycorrhizal inoculated <span class="html-italic">P. trifoliata</span> roots; NM, non-mycorrhizal control roots. The asterisks indicated significant differences of student’s <span class="html-italic">t</span>-test (** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Identification of the interaction of AM symbiosis-related PtGRAS proteins. (<b>A</b>) Y2H analyses screening the interaction among PtGRAS proteins using SD/–LW and SD/–LWHA selective medium. AD-RecT + BD-53 and AD + BD were utilized as positive control and negative control, respectively. The experimental controls (positive and negative controls) are shown in <a href="#app1-ijms-26-02082" class="html-app">Figure S3</a>. (<b>B</b>) BiFC assay validation of the interaction between PtGRAS6, PtGRAS12, and PtGRAS18 proteins in <span class="html-italic">N. benthamiana</span> leaves. Scale bars, 30 µm. The overlapping of GFP and mCherry fluorescence is marked with red arrow. FIB2:mCherry was utilized as a nucleus marker, YFPn + YFPc was provided as the negative control.</p>
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20 pages, 8319 KiB  
Article
Shortening the Saturation Time of PBAT Sheet Foaming via the Pre-Introducing of Microporous Structures
by Fangwei Tian, Junjie Jiang, Yaozong Li, Hanyi Huang, Yushu Wang, Ziwei Qin and Wentao Zhai
Materials 2025, 18(5), 1044; https://doi.org/10.3390/ma18051044 - 26 Feb 2025
Viewed by 257
Abstract
Poly (butylene adipate-co-terephthalate) (PBAT) foam sheets prepared by foaming supercritical fluids are characterized by high resilience, homogeneous cellular structure, and well-defined biodegradability. However, the inert chemical structure and the rigid hard segments restrict the diffusion of CO2 within the PBAT matrix, resulting [...] Read more.
Poly (butylene adipate-co-terephthalate) (PBAT) foam sheets prepared by foaming supercritical fluids are characterized by high resilience, homogeneous cellular structure, and well-defined biodegradability. However, the inert chemical structure and the rigid hard segments restrict the diffusion of CO2 within the PBAT matrix, resulting in extremely long gas saturation times as long as 9 h at a thickness of 12 mm. In this study, microporous structures were pre-introduced into the PBAT matrix to provide a fast gas diffusion pathway during the saturation process. After 2 h of saturation, PBAT foam sheets with expansion ratio of 10 to 13.8 times were prepared. The interaction of CO2 with PBAT was systematically investigated, and the CO2 sorption process was evaluated kinetically and thermodynamically using the Fickian diffusion theory. The solubility and diffusion rate of CO2 in pretreated PBAT sheets with different microporous sizes and densities were investigated, and the effects of pretreatment strategies on the foaming behavior and cell structure of PBAT foam sheets were discussed. The introduction of a microporous structure not only reduces saturation time but also enhances solubility, enabling the successful preparation of soft foams with high expansion ratios and resilience. After undergoing foaming treatment, the PBAT pretreated sheets with a 10 μm microporous structure and a density of 0.45 g/cm3 demonstrated improved mechanical properties: their hardness decreased to 35 C while resilience increased to 58%, reflecting enhanced elastic recovery capabilities. The pretreatment method, which increases the diffusion rate of CO2 in PBAT sheets, offers a straightforward approach that provides valuable insights into achieving rapid and efficient foaming of thick PBAT sheets in industrial applications. Full article
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<p>Schematic of PBAT foam preparation. (<b>a</b>) One-step foaming of PBAT sheets; (<b>b</b>) foaming of PBAT pretreated sheets; (<b>c</b>) schematic diagram of the PBAT sheet pretreatment–short-duration foaming process; (<b>d</b>) parameter distributions during pretreatment–short-duration saturated foaming process.</p>
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<p>CO<sub>2</sub> sorption and diffusion in untreated PBAT sheets. (<b>a</b>) Schematic diagram of CO<sub>2</sub> diffusion in PBAT matrix; (<b>b</b>) CO<sub>2</sub> sorption in PBAT sheets of different thicknesses at 100 °C—18 MPa; (<b>c</b>) fitting of Fick’s diffusion model; (<b>d</b>) isothermal sorption of CO<sub>2</sub> in PBAT; (<b>e</b>) kinetic linear fitting of diffusion coefficients at different temperatures; and (<b>f</b>) kinetic linear fitting of diffusion coefficients at different pressures.</p>
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<p>PBAT foam thermal behavior. (<b>a</b>) DSC curves of the PBAT samples treated under various pressures and temperatures; (<b>b</b>) degree of crystallinity based on DSC pattern.</p>
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<p>SEM image of the evolution of the cell structure of untreated PBAT sheet (6 mm thickness) with saturation time at 100 °C—18 MPa. (<b>a<sub>1</sub></b>–<b>e<sub>1</sub></b>) evolution of the cell structure in the edge region with saturation time (10–150 min); (<b>a<sub>2</sub></b>–<b>e<sub>2</sub></b>) evolution of the cell structure in the middle region with saturation time (10–150 min); and (<b>a<sub>3</sub></b>–<b>e<sub>3</sub></b>) evolution of the cell structure in the core region with saturation time (10–150 min).</p>
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<p>Dynamic information on the cell structure of PBAT foams obtained at 100 °C—18 MPa. (<b>a</b>) Cell size across different positions at different times; (<b>b</b>) cell density across different positions at different times.</p>
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<p>SEM image of microporous structures of typical PBAT pretreated sheets. (<b>a<sub>1</sub></b>–<b>c<sub>1</sub></b>) samples with different microporous sizes at a density of 0.35 g/cm<sup>3</sup>; (<b>a<sub>2</sub></b>–<b>c<sub>2</sub></b>) samples with different microporous sizes at a density of 0.45 g/cm<sup>3</sup>; (<b>a<sub>3</sub></b>–<b>c<sub>3</sub></b>) samples with different microporous sizes at a density of 0.65 g/cm<sup>3</sup>.</p>
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<p>Diffusive behavior of CO<sub>2</sub> in pretreated PBAT sheets. (<b>a</b>) Effect of microporous structure on cell wall; (<b>b</b>) CO<sub>2</sub> sorption process under different microporous structures; (<b>c</b>) linear fitting of diffusion coefficients; (<b>d</b>) schematic diagram of rapid CO<sub>2</sub> diffusion in pretreated PBAT sheets.</p>
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<p>SEM images of foamed PBAT sheets with different microporous structures (red circles show graded cell structures). (<b>a<sub>1</sub></b>–<b>c<sub>1</sub></b>) samples with different micropore sizes of 10 μm, 75 μm and 140 μm at a density of 0.35 g/cm<sup>3</sup>; (<b>a<sub>2</sub></b>–<b>c<sub>2</sub></b>) samples with different micropore sizes of 10 μm, 75 μm and 140 μm at a density of 0.35 g/cm<sup>3</sup>; (<b>a<sub>3</sub></b>–<b>c<sub>3</sub></b>) samples with different micropore sizes of 10 μm, 75 μm and 140 μm at a density of 0.35 g/cm<sup>3</sup>.</p>
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<p>Cell morphology of PBAT foamed sheets with different microporous structures. (<b>a</b>) Cell size; (<b>b</b>) cell density; (<b>c</b>) expansion ratio.</p>
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<p>Mechanical properties of PBAT foams. (<b>a</b>,<b>b</b>) Compression properties, (<b>c</b>) hardness, and (<b>d</b>) resilience.</p>
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27 pages, 38210 KiB  
Article
Three-Dimensional Numerical Investigation of the Asymmetric Discard Characteristics of Hypervelocity Projectile Sabot
by Xuefeng Yang, Junyong Lu, Bai Li, Sai Tan and Zhiqiang Xie
Aerospace 2025, 12(3), 187; https://doi.org/10.3390/aerospace12030187 - 26 Feb 2025
Viewed by 193
Abstract
Sabots are vital to the successful launch of hypervelocity projectiles (HVPs), supporting and protecting the projectile’s flight body within the barrel. After the projectile exits the muzzle, aerodynamic forces induce relative motion between the sabot and the flight body, termed ‘sabot discard’. During [...] Read more.
Sabots are vital to the successful launch of hypervelocity projectiles (HVPs), supporting and protecting the projectile’s flight body within the barrel. After the projectile exits the muzzle, aerodynamic forces induce relative motion between the sabot and the flight body, termed ‘sabot discard’. During this process, there are complex aerodynamic interactions between the sabot and flight body. These interactions impact the flight body’s flight stability and accuracy. This research focuses on an HVP with a two-segment sabot at Mach 7.2, employing the unstructured overset grid method and three-degree-of-freedom model to investigate the impact of the angle of attack (AOA) on the discard. At the AOA = 0 Deg, the sabot segments’ movement is symmetric, causing fluctuations in the flight body’s drag. However, at AOAs 0 Deg, the sabot segments’ movement becomes asymmetric. The upper sabot segment accelerates while the lower one decelerates, causing significant fluctuations in drag and lift, and prolonged disturbance. As the AOA increases, both asymmetry and disturbances intensify. Notably, at the AOA = 8 Deg, the absolute value of the discard angle difference between the upper and lower sabot segments reaches 45 Deg. Considering the AOA’s impact, it is advisable to maintain the AOA for HVP sabot discard in the range of [−2, 2] Deg. Full article
(This article belongs to the Section Aeronautics)
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Figure 1

Figure 1
<p>Schematic of the HVP, adapted from reference [<a href="#B22-aerospace-12-00187" class="html-bibr">22</a>]: (<b>a</b>) HVP; and (<b>b</b>) the sabot and the flight body.</p>
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<p>Schematic of the HVP, adapted from reference [<a href="#B22-aerospace-12-00187" class="html-bibr">22</a>]: (<b>a</b>) HVP; and (<b>b</b>) the sabot and the flight body.</p>
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<p>Schematic of the background grid.</p>
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<p>Schematic of the sub-grids.</p>
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<p>The model of the WPFS.</p>
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<p>Comparison of experimental results and the calculation result: (<b>a</b>) displacement; and (<b>b</b>) attitude angle.</p>
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<p>Discard trajectories of the sabot at the AOA = 0 Deg under three sets of grids with different scales in unsteady case: (<b>a</b>) the upper sabot segment’s displacement; (<b>b</b>) the upper sabot segment’s discard angle; (<b>c</b>) the lower sabot segment’s displacement; and (<b>d</b>) the lower sabot segment’s discard angle.</p>
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<p>Pressure contour of the flight body: (<b>a</b>) AOA = 0 Deg; (<b>b</b>) AOA = 2 Deg; (<b>c</b>) AOA = 4 Deg; (<b>d</b>) AOA = 6 Deg; and (<b>e</b>) AOA = 8 Deg.</p>
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<p>Pressure coefficient of the flight body: (<b>a</b>) upper side; and (<b>b</b>) lower side.</p>
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<p>Drag and lift coefficient of the flight body changing with AOA: (<b>a</b>) drag coefficient; and (<b>b</b>) lift coefficient.</p>
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<p>Pressure contour of HVP: (<b>a</b>) AOA = 0 Deg; (<b>b</b>) AOA = 2 Deg; (<b>c</b>) AOA = 4 Deg; (<b>d</b>) AOA = 6 Deg; and (<b>e</b>) AOA = 8 Deg.</p>
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<p>Drag and lift coefficient of the projectile changing with AOA: (<b>a</b>) drag coefficient; and (<b>b</b>) lift coefficient.</p>
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<p>Pressure contour of sabot symmetric discard at different moments: (<b>a</b>) <span class="html-italic">t</span> = 0 ms; (<b>b</b>) <span class="html-italic">t</span> = 0.2 ms; (<b>c</b>) <span class="html-italic">t</span> = 0.4 ms; (<b>d</b>) <span class="html-italic">t</span> = 0.6 ms; (<b>e</b>) <span class="html-italic">t</span> = 0.8 ms; and (<b>f</b>) <span class="html-italic">t</span> = 1 ms.</p>
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<p>Pressure coefficient distribution of the surface of the flight body at different moments under the sabot symmetric discard.</p>
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<p>Drag coefficient of the flight body with time under the condition of the sabot symmetric discard.</p>
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<p>Discard trajectories: (<b>a</b>) displacement; and (<b>b</b>) discard angles.</p>
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<p>Pressure distribution on the surface of the sabot at different AOAs and <span class="html-italic">t</span> = 0 ms: (<b>a</b>) the upper sabot segment; and (<b>b</b>) the lower sabot segment.</p>
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<p>Pressure contour of the flow field of the sabot asymmetric discard at AOA = 2 Deg: (<b>a</b>) <span class="html-italic">t</span> = 0 ms; (<b>b</b>) <span class="html-italic">t</span> = 0.2 ms; (<b>c</b>) <span class="html-italic">t</span> = 0.4 ms; (<b>d</b>) <span class="html-italic">t</span> = 0.6 ms; (<b>e</b>) <span class="html-italic">t</span> = 0.8 ms; and (<b>f</b>) <span class="html-italic">t</span> = 1 ms.</p>
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<p>Pressure contour of the flow field of the sabot asymmetric discard at AOA = 4 Deg: (<b>a</b>) <span class="html-italic">t</span> = 0 ms; (<b>b</b>) <span class="html-italic">t</span> = 0.2 ms; (<b>c</b>) <span class="html-italic">t</span> = 0.4 ms; (<b>d</b>) <span class="html-italic">t</span> = 0.6 ms; (<b>e</b>) <span class="html-italic">t</span> = 0.8 ms; and (<b>f</b>) <span class="html-italic">t</span> = 1 ms.</p>
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<p>Pressure contour of the flow field of the sabot asymmetric discard at AOA = 6 Deg: (<b>a</b>) <span class="html-italic">t</span> = 0 ms; (<b>b</b>) <span class="html-italic">t</span> = 0.2 ms; (<b>c</b>) <span class="html-italic">t</span> = 0.4 ms; (<b>d</b>) <span class="html-italic">t</span> = 0.6 ms; (<b>e</b>) <span class="html-italic">t</span> = 0.8 ms; and (<b>f</b>) <span class="html-italic">t</span> = 1 ms.</p>
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<p>Pressure contour of the flow field of the sabot asymmetric discard at AOA = 8 Deg: (<b>a</b>) <span class="html-italic">t</span> = 0 ms; (<b>b</b>) <span class="html-italic">t</span> = 0.2 ms; (<b>c</b>) <span class="html-italic">t</span> = 0.4 ms; (<b>d</b>) <span class="html-italic">t</span> = 0.6 ms; (<b>e</b>) <span class="html-italic">t</span> = 0.8 ms; and (<b>f</b>) <span class="html-italic">t</span> = 1 ms.</p>
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<p>Drag and lift coefficients of the flight body with time under the condition of asymmetric discard of sabot: (<b>a</b>) drag coefficients; and (<b>b</b>) lift coefficients.</p>
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<p>Pressure coefficient distribution of the surface of the flight body under the AOA = 2 Deg and AOA = 4 Deg: (<b>a</b>) upper side of the flight body at AOA = 2 Deg; (<b>b</b>) lower side of the flight body at AOA = 2 Deg; (<b>c</b>) upper side of the flight body at AOA = 4 Deg; and (<b>d</b>) lower side of the flight body at AOA = 4 Deg.</p>
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<p>Discard trajectories at different AOAs: (<b>a</b>) displacement of the upper sabot segment; (<b>b</b>) discard angles of the upper sabot segment; (<b>c</b>) displacement of the lower sabot segment; and (<b>d</b>) discard angles of the lower sabot segment.</p>
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21 pages, 12635 KiB  
Article
Insight into the Characterization of Two Female Suppressor Gene Families: SOFF and SyGI in Plants
by Yanrui Zhu, Zeeshan Ahmad, Youjun Lv, Yongshan Zhang and Guodong Chen
Genes 2025, 16(3), 280; https://doi.org/10.3390/genes16030280 - 26 Feb 2025
Viewed by 247
Abstract
Background/Objectives: The Suppressor of Female Function (SOFF) and Shy Girl (SyGI) gene families play vital roles in sex determination in dioecious plants. However, their evolutionary dynamics and functional characteristics remain largely unexplored. Methods: Through this study, a systematic bioinformatics [...] Read more.
Background/Objectives: The Suppressor of Female Function (SOFF) and Shy Girl (SyGI) gene families play vital roles in sex determination in dioecious plants. However, their evolutionary dynamics and functional characteristics remain largely unexplored. Methods: Through this study, a systematic bioinformatics analysis of SOFF and SyGI families was performed in plants to explore their evolutionary relationships, gene structures, motif synteny and functional predictions. Results: Phylogenetic analysis showed that the SOFF family expanded over time and was divided into two subfamilies and seven groups, while SyGI was a smaller family made of compact molecules with three groups. Synteny analysis revealed that 125 duplicated gene pairs were identified in Kiwifruit where WGD/segmental duplication played a major role in duplicating these events. Structural analysis predicted that SOFF genes have a DUF 247 domain with a transmembrane region, while SyGI sequences have an REC-like conserved domain, with a “barrel-shaped” structure consisting of five α-helices and five β-strands. Promoter region analysis highlighted their probable regulatory roles in plant development, hormone signaling and stress responses. Protein interaction analysis exhibited only four SOFF genes with a close interaction with other genes, while SyGI genes had extensive interactions, particularly with cytokinin signal transduction pathways. Conclusions: The current study offers a crucial understanding of the molecular evolution and functional characteristics of SOFF and SyGI gene families, providing a foundation for future functional validation and genetic studies on developmental regulation and sex determination in dioecious plants. Also, this research enhances our insight into plant reproductive biology and offers possible targets for breeding and genetic engineering approaches. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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<p>The Maximum Likelihood (ML) phylogenetic tree of <span class="html-italic">SOFF</span> family. The Maximum Likelihood (ML) phylogeny trees were constructed using MEGA 10.2 software. Bootstrap values above 0.5 from 1000 replicates are shown at each node. Different colors represent various phylogenetic groups.</p>
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<p>The Maximum Likelihood (ML) phylogeny trees of <span class="html-italic">SyGI</span> family genes. The Maximum Likelihood (ML) phylogeny trees were constructed using MEGA 10.2 software. Bootstrap values above 0.5 from 1000 replicates are shown at each node. Different colors represent various phylogenetic groups.</p>
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<p>Overview of Evolutionarily Conserved Modules (ECMs) of <span class="html-italic">SOFF</span> and <span class="html-italic">SyGI</span> homologous genes in <span class="html-italic">A. thaliana</span>.</p>
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<p>Collinearity and selective pressure analysis. (<b>A</b>) Collinearity analysis for <span class="html-italic">SyGI</span> genes in <span class="html-italic">Actinidia chenisis genomes.</span> Different colors represent various genomes, where yellow color indicates Hongyang3, red color represents Actinidia Red and sky-blue color represents Actinidia White genomes. (<b>B</b>) Dual synteny analysis of <span class="html-italic">Actinidia chenisis</span> with <span class="html-italic">A. thaliana</span>.</p>
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<p>Schematic diagram of the motifs, domains and tertiary structure of <span class="html-italic">SyGI</span> proteins. (<b>A</b>) The NJ phylogenetic tree was constructed based on the full-length sequences of <span class="html-italic">SyGI</span> genes using MEGA 10.2 software. (<b>B</b>) The motif composition of <span class="html-italic">SyGI</span> proteins. (<b>C</b>) Schematic representation of the domain in <span class="html-italic">SyGI</span> genes. (<b>D</b>) The tertiary structure of <span class="html-italic">SyGI</span> homologous protein in <span class="html-italic">A. thaliana</span> (<span class="html-italic">At3G04280.1</span>). (<b>E</b>) Tertiary structure prediction of Kiwifruit <span class="html-italic">SyGI</span> genes (<span class="html-italic">Actinidia33667.1</span>) based on <span class="html-italic">AT3G04280.1</span> as a template. The <span class="html-italic">SyGI</span> domains are highlighted by red boxes and grey boxes, respectively. The length of protein can be estimated using the scale at the bottom.</p>
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<p>Schematic diagram of tertiary structure (including transmembrane domain) and subcellular localization of <span class="html-italic">SOFF</span> homologous proteins. (<b>A</b>) Sequence and primary structure of transmembrane domain of <span class="html-italic">SOFF</span> proteins. (<b>B</b>) Schematic diagram of transmembrane domain and subcellular localization of <span class="html-italic">SOFF</span> proteins.</p>
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<p>Promoter region analysis in <span class="html-italic">A. thaliana.</span> (<b>A</b>) <span class="html-italic">Cis</span>-regulatory elements in promoter region of <span class="html-italic">SOFF</span> genes. (<b>B</b>) <span class="html-italic">Cis</span>-regulatory elements in the promoter regions of <span class="html-italic">SyGI</span> genes.</p>
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<p>STRING regulatory networks analysis in <span class="html-italic">A. thaliana</span>. (<b>A</b>) Protein interaction of <span class="html-italic">SyGI</span> gene. (<b>B</b>) Protein interactions of <span class="html-italic">SOFF</span> gene in <span class="html-italic">A. thaliana</span>.</p>
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<p>STRING regulatory networks analysis in <span class="html-italic">A. thaliana</span>. (<b>A</b>) Protein interaction of <span class="html-italic">SyGI</span> gene. (<b>B</b>) Protein interactions of <span class="html-italic">SOFF</span> gene in <span class="html-italic">A. thaliana</span>.</p>
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24 pages, 1168 KiB  
Article
Adaptive Extended Kalman Prediction-Based SDN-FANET Segmented Hybrid Routing Scheme
by Ke Sun, Mingyong Liu, Chuan Yin and Qian Wang
Sensors 2025, 25(5), 1417; https://doi.org/10.3390/s25051417 - 26 Feb 2025
Viewed by 155
Abstract
Recently, with the advantages of easy deployment, flexibility, diverse functions, and low cost, flying ad hoc network (FANET) has captured great attention for its huge potential in military and civilian applications, whereas the high-speed movement and limited node energy of unmanned aerial vehicles [...] Read more.
Recently, with the advantages of easy deployment, flexibility, diverse functions, and low cost, flying ad hoc network (FANET) has captured great attention for its huge potential in military and civilian applications, whereas the high-speed movement and limited node energy of unmanned aerial vehicles (UAVs) leads to high dynamic topology and high packet loss rate in FANET. Thus, we introduce the software-defined networking (SDN) architecture into FANET and investigate routing scheme in an SDN-FANET to harvest the advantages of SDN centralized control. Firstly, a FANET segmented routing scheme based on the hybrid SDN architecture is proposed, where inter-segment conducts energy-balanced routing and intra-segment adopts three-dimensional (3D) greedy perimeter stateless routing (GPSR). Specifically, we design the specific process of message interaction between SDN controller and UAV nodes to ensure the execution of the inter-segment routing based on energy balance. Further, to reduce the packet loss rate in high-speed motion scenes, an adaptive extended Kalman prediction algorithm is also proposed to track and predict the 3D movement of UAVs. Simulations verify the effectiveness of the proposed routing scheme in terms of end-to-end delay and packet delivery ratio. Full article
(This article belongs to the Section Sensor Networks)
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<p>The system model of FANET.</p>
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<p>SDN-FANET segmented hybrid routing design based on A-EKF.</p>
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<p>The packet format of Hello.</p>
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<p>The first round of Hello packet exchange in the SDN-FANET. * indicates the initial state in the neighbor list, i.e., there is no neighbor information yet.</p>
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<p>The second round of Hello packet exchange in the SDN-FANET. * indicates the initial state in the neighbor list, i.e., there is no neighbor information yet.</p>
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<p>Data forwarding based on segmented source routing in FANET.</p>
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<p>The packet format of SDN_request.</p>
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<p>The packet format of SDN_SR list.</p>
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<p>The packet format of SDN_data.</p>
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<p>The packet format of SDN_cancel.</p>
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<p>The packet format of RREQ.</p>
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<p>The packet format of RREP.</p>
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<p>Node layer model of UAV.</p>
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<p>Node layer model of SDN controller.</p>
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<p>Route module process in UAV.</p>
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<p>Route module process in SDN controller.</p>
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<p>Adaptive extended Kalman prediction for position of UAV node.</p>
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<p>Adaptive extended Kalman prediction for speed of UAV node.</p>
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<p>End-to-end delay of different routing schemes (v = 20 m/s).</p>
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<p>End-to-end delay of the proposed routing scheme at different speeds.</p>
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<p>Packet delivery ratio of different routing schemes (v = 20 m/s).</p>
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<p>Packet delivery ratio of the proposed routing scheme at different speed.</p>
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