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22 pages, 11426 KiB  
Article
The Characteristics and Driving Factors of Soil Salinisation in the Irrigated Area on the Southern Bank of the Yellow River in Inner Mongolia: A Assessment of the Donghaixin Irrigation District
by Ziyuan Qin, Tangzhe Nie, Ying Wang, Hexiang Zheng, Changfu Tong, Jun Wang, Rongyang Wang and Hongfei Hou
Agriculture 2025, 15(5), 566; https://doi.org/10.3390/agriculture15050566 - 6 Mar 2025
Abstract
Soil salinisation is a critical problem in northern China’s arid and semi-arid irrigated regions, posing a substantial impediment to the sustainable advancement of agriculture in these areas. This research utilises the Donghaixin Irrigation District, located on the southern bank of the Yellow River [...] Read more.
Soil salinisation is a critical problem in northern China’s arid and semi-arid irrigated regions, posing a substantial impediment to the sustainable advancement of agriculture in these areas. This research utilises the Donghaixin Irrigation District, located on the southern bank of the Yellow River in Inner Mongolia, as a case study. This study examines the spatial distribution and determinants of soil salinisation through macro-environmental variables and micro-ion composition, integrating regression models and groundwater ion characteristics to elucidate the patterns and causes of soil salinisation systematically. The findings demonstrate that soil salinisation in the study region displays notable spatial clustering, with surface water-irrigated regions exhibiting greater salinisation levels than groundwater-irrigated areas. More than 80% of the land exhibits moderate salinity, predominantly characterised by the ions Cl, HCO3, and SO42−. The hierarchy of ion concentration variation with escalating soil salinity is as follows: Na+ > K+ > SO42− > Cl > Mg2+ > HCO3 + CO32− > Ca2+. The susceptibility of ions to soil salinisation is ordered as follows: Ca2+ > Na+ > HCO3 + CO32− > Mg2+ > K+ > Cl > SO42−. In contrast to the ordinary least squares (OLS) model, the geographic weighted regression (GWR) model more effectively elucidates the geographical variability of salinity, evidenced by an adjusted R2 of 0.68, particularly in high-salinity regions, where it more precisely captures the trend of observed values. Ecological driving elements such as organic matter (OM), pH, groundwater depth (GD), total dissolved solids (TDS), digital elevation model (DEM), normalised difference vegetation index (NDVI), soil moisture (SM), and potential evapotranspiration (PET) govern the distribution of salinisation. In contrast, anthropogenic activities affect the extent of salinisation variation. Piper’s trilinear diagram demonstrates that Na cations mainly characterise groundwater and soil water chemistry. In areas irrigated by surface water, the concentration of SO42− is substantially elevated and significantly affected by agricultural practises; conversely, in groundwater-irrigated regions, Cl and HCO3 are more concentrated, primarily driven by evaporation and ion exchange mechanisms. Full article
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<p>Distribution of the study area and sampling points.</p>
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<p>Comprehensive map of soil salinisation and alkalisation distribution ((<b>a</b>): spatial distribution of soil salinisation; (<b>b</b>): proportion of different degrees of salinisation; (<b>c</b>): salt content in lightly salinised soils).</p>
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<p>Spatial autocorrelation map of soil salinity in the study area ((<b>a</b>): Moran <span class="html-italic">I</span> scatter plot of soil salinity; (<b>b</b>): LISA clustering map).</p>
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<p>Correlation analysis of soil salinity and trace ion content ((<b>a</b>): correlation coefficients between soil salinity and trace ions; (<b>b</b>): correlation coefficients between soil salinity and trace ions at different levels of salinisation; (<b>c</b>): sensitivity analysis of correlation coefficients of trace ions).</p>
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<p>Comparison of predicted values and observed values for OLS and GWR models.</p>
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<p>Spatial distribution of regression coefficients for factors affecting salinity.</p>
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<p>GWR model soil salinity distribution prediction map.</p>
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<p>Piper trigram of groundwater and soil water-soluble ions ((<b>a</b>): groundwater ion piper trigram; (<b>b</b>): soil water-soluble ion piper trigram).</p>
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<p>The relationship between soil soluble salts and the degree of salinisation.</p>
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<p>DEM and GD in the study area.</p>
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18 pages, 1850 KiB  
Article
MySTOCKS: Multi-Modal Yield eSTimation System of in-prOmotion Commercial Key-ProductS
by Cettina Giaconia and Aziz Chamas
Computation 2025, 13(3), 67; https://doi.org/10.3390/computation13030067 - 6 Mar 2025
Abstract
In recent years, Out-of-Stock (OOS) occurrences have posed a persistent challenge for both retailers and manufacturers. In the context of grocery retail, an OOS event represents a situation where customers are unable to locate a specific product when attempting to make a purchase. [...] Read more.
In recent years, Out-of-Stock (OOS) occurrences have posed a persistent challenge for both retailers and manufacturers. In the context of grocery retail, an OOS event represents a situation where customers are unable to locate a specific product when attempting to make a purchase. This study analyzes the issue from the manufacturer’s perspective. The proposed system, named the “Multi-modal yield eSTimation System of in-prOmotion Commercial Key-ProductS” (MySTOCKS) platform, is a sophisticated multi-modal yield estimation system designed to optimize inventory forecasting for the agrifood and large-scale retail sectors, particularly during promotional periods. MySTOCKS addresses the complexities of inventory management in settings where Out-of-Stock (OOS) and Surplus-of-Stock (SOS) situations frequently arise, offering predictive insights into final stock levels across defined forecasting intervals to support sustainable resource management. Unlike traditional approaches, MySTOCKS leverages an advanced deep learning framework that incorporates transformer models with self-attention mechanisms and domain adaptation capabilities, enabling accurate temporal and spatial modeling tailored to the dynamic requirements of the agrifood supply chain. The system includes two distinct forecasting modules: TR1, designed for standard stock-level estimation, and TR2, which focuses on elevated demand periods during promotions. Additionally, MySTOCKS integrates Elastic Weight Consolidation (EWC) to mitigate the effects of catastrophic forgetting, thus enhancing predictive accuracy amidst changing data patterns. Preliminary results indicate high system performance, with test accuracy, sensitivity, and specificity rates approximating 93.8%. This paper provides an in-depth examination of the MySTOCKS platform’s modular structure, data-processing workflow, and its broader implications for sustainable and economically efficient inventory management within agrifood and large-scale retail environments. Full article
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<p>The proposed MySTOCKS pipeline: overview diagram.</p>
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<p>The transformer-based TR1 forecasts inventory using encoding and decoding blocks, multi-head attention, and Gated Residual Networks (GRNs). (<b>a</b>) Overall Architecture; (<b>b</b>) A detail of the Variable Selection Block (VSB) and gated Residual Network (GRN) block embedded in the TR1 architecture.</p>
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<p>The transformer-based TR2 sub-system: overview diagram. TR2 predicts promotional stock levels, classifying whether the final inventory exceeds a 20% threshold. It utilizes encoding–decoding blocks, multi-head attention, Gated Residual Networks (GRNs), and a classification layer for decision making.</p>
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17 pages, 7296 KiB  
Article
Trichostatin A-Induced Epigenetic Modifications and Their Influence on the Development of Porcine Cloned Embryos Derived from Bone Marrow–Mesenchymal Stem Cells
by Seung-Chan Lee, Won-Jae Lee, Young-Bum Son, Yeung Bae Jin, Hyeon-Jeong Lee, Eunyeong Bok, Sangyeob Lee, Sang-Yun Lee, Chan-Hee Jo, Tae-Seok Kim, Chae-Yeon Hong, Seo-Yoon Kang, Gyu-Jin Rho, Yong-Ho Choe and Sung-Lim Lee
Int. J. Mol. Sci. 2025, 26(5), 2359; https://doi.org/10.3390/ijms26052359 - 6 Mar 2025
Abstract
Abnormal epigenetic reprogramming of nuclear-transferred (NT) embryos leads to the limited efficiency of producing cloned animals. Trichostatin A (TSA), a histone deacetylase inhibitor, improves NT embryo development, but its role in histone acetylation in porcine embryos cloned with mesenchymal stem cells (MSCs) is [...] Read more.
Abnormal epigenetic reprogramming of nuclear-transferred (NT) embryos leads to the limited efficiency of producing cloned animals. Trichostatin A (TSA), a histone deacetylase inhibitor, improves NT embryo development, but its role in histone acetylation in porcine embryos cloned with mesenchymal stem cells (MSCs) is not fully understood. This study aimed to compare the effects of TSA on embryo development, histone acetylation patterns, and key epigenetic-related genes between in vitro fertilization (IVF), NT-MSC, and 40 nM TSA-treated NT-MSC (T-NT-MSC). The results demonstrated an increase in the blastocyst rate from 13.7% to 32.5% in the T-NT-MSC, and the transcription levels of CDX2, NANOG, and IGF2R were significantly elevated in T-NT-MSC compared to NT-MSC. TSA treatment also led to increased fluorescence intensity of acH3K9 and acH3K18 during early embryo development but did not differ in acH4K12 levels. The expression of epigenetic-related genes (HDAC1, HDAC2, CBP, p300, DNMT3a, and DNMT1) in early pre-implantation embryos followed a pattern similar to IVF embryos. In conclusion, TSA treatment improves the in vitro development of porcine embryos cloned with MSCs by increasing histone acetylation, modifying chromatin structure, and enhancing the expression of key genes, resulting in profiles similar to those of IVF embryos. Full article
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<p>Embryos cultured in vitro for 7 days from reconstituted NT embryos, which were derived from BM-MSCs. IVF, in vitro fertilization control; NT-BMSC, NT embryos derived from BM-MSCs; T-NT-BMSC, NT embryos derived from BM-MMSCs treated with 40 nM TSA for 24 h. Magnification at ×40.</p>
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<p>Comparative relative mRNA expression levels of transcription factors at the blastocyst stage. Porcine SDHA mRNA expression was used as the internal control, with the expression level in IVF embryos arbitrarily set to onefold. Bars labeled with different letters (a–c) indicate statistically significant differences (<span class="html-italic">p</span> &lt; 0.05). Data are presented as the mean ± SD from three replicates.</p>
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<p>Acetylation levels of H3K9 during preimplantation development in IVF, NT-BMSCs, and T-NT-BMSCs embryos. Immunostaining of acH3K9 in embryos. Embryos were stained with anti-acH3K9 antibody (red), and DNA was counterstained with Hoechst 33342 (blue). Original magnification: 100×. Optical intensity was quantified using Image J software (version 1.53K). Data are presented as the mean ± SEM. * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Acetylation levels of H3K18 during preimplantation development in IVF, NT-BMSC, and T-NT-BMSC embryos. Immunostaining of acH3K18 in embryos. Embryos were stained with an anti-acH3K18 antibody (red), and DNA was counterstained with Hoechst 33342 (blue). Original magnification: 100×. Optical intensity was quantified using Image J software (version 1.53K). Data are presented as the mean ± SEM. * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Acetylation levels of H4K12 during preimplantation development in IVF, NT-BMSCs, and T-NT-BMSCs embryos. Immunostaining of acH4K12 in embryos. Embryos were stained with an anti-acH4K12 antibody (red), and DNA was counterstained with Hoechst 33342 (blue). Original magnification: 100×. Optical intensity was quantified using Image J software (version 1.53K). Data are presented as the mean ± SEM. * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Comparative relative mRNA expression levels of <span class="html-italic">HDAC1</span>, <span class="html-italic">HDAC2</span>, <span class="html-italic">CBP</span>, <span class="html-italic">p300</span>, <span class="html-italic">DNMT3a</span>, and <span class="html-italic">DNMT1</span> at different embryo stages. Porcine SDHA mRNA expression was used as the internal control, with the expression level in IVF embryos arbitrarily set to onefold. Data are presented as the mean ± SD from three replicates. * <span class="html-italic">p</span> &lt; 0.05.</p>
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12 pages, 486 KiB  
Article
Objective Sleep–Wake Findings in Patients with Post-COVID-19 Syndrome, Fatigue and Excessive Daytime Sleepiness
by Livia G. Fregolente, Lara Diem, Jan D. Warncke, Julia van der Meer, Anina Schwarzwald, Carolin Schäfer, Helly Hammer, Andrew Chan, Robert Hoepner and Claudio L. A. Bassetti
Clin. Transl. Neurosci. 2025, 9(1), 15; https://doi.org/10.3390/ctn9010015 - 5 Mar 2025
Viewed by 266
Abstract
Sleep–wake disturbances are common in post-COVID-19 syndrome but lack extensive objective characterization. This study evaluated sleep–wake patterns in 31 patients with post-COVID-19 syndrome referred for fatigue and excessive daytime sleepiness (EDS). Assessments included questionnaires (the fatigue severity scale, the Epworth sleepiness scale, and [...] Read more.
Sleep–wake disturbances are common in post-COVID-19 syndrome but lack extensive objective characterization. This study evaluated sleep–wake patterns in 31 patients with post-COVID-19 syndrome referred for fatigue and excessive daytime sleepiness (EDS). Assessments included questionnaires (the fatigue severity scale, the Epworth sleepiness scale, and the Beck Depression Index-II), video polysomnography (V-PSG), the multiple sleep latency test (MSLT, n = 15), and actigraphy (n = 29). Patients (70% female, mean age 45 years) had mostly mild acute SARS-CoV-2 infections and were assessed a median of 31 weeks post-infection. Fatigue (fatigue severity scale, median 6.33), sleepiness (the Epworth sleepiness scale, median 15), and depression (Beck depression inventory-II, median 20) scores were elevated. V-PSG showed moderate sleep apnea in 35.5%, increased arousal index in 77.4%, and median sleep stage percentages of NREM1 (12%), NREM2 (37%), NREM3 (19%), and REM (15.8%). MSLT revealed only 13.3% with sleep latencies under 8 min and no sleep-onset REM periods. Actigraphy indicated increased inactivity index in 96.6%, with high variability in time in bed. These findings highlight a polysomnographic and actigraphic profile of increased arousal and clinophilia, alongside moderate sleep apnea and limited objective sleepiness on MSLT. Addressing these multifactorial sleep disturbances is crucial in managing post-COVID-19 syndrome. Full article
(This article belongs to the Section Clinical Neurophysiology)
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<p>Distribution of sleep stages in patients with post-COVID syndrome. The box plot illustrates the distribution of sleep stages (NREM1, NREM2, NREM3, REM, and Wake) as a percentage of total recording time. Each box represents the interquartile range (IQR), with the median indicated by the line inside the box. Whiskers extend to 1.5 times the IQR, and outliers are plotted individually. The figure provides insights into the variation and prevalence of different sleep stages during the recording period. NREM = non-rapid-eye-movement sleep; REM = rapid-eye-movement sleep. N = 31.</p>
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24 pages, 5231 KiB  
Article
Thermo-Mechanical Phase-Field Modeling of Fracture in High-Burnup UO2 Fuels Under Transient Conditions
by Merve Gencturk, Nicholas Faulkner and Karim Ahmed
Materials 2025, 18(5), 1162; https://doi.org/10.3390/ma18051162 - 5 Mar 2025
Viewed by 122
Abstract
This study presents a novel multiphysics phase-field fracture model to analyze high-burnup uranium dioxide (UO2) fuel behavior under transient reactor conditions. Fracture is treated as a stochastic phase transition, which inherently accounts for the random microstructural effects that lead to variations [...] Read more.
This study presents a novel multiphysics phase-field fracture model to analyze high-burnup uranium dioxide (UO2) fuel behavior under transient reactor conditions. Fracture is treated as a stochastic phase transition, which inherently accounts for the random microstructural effects that lead to variations in the value of fracture strength. Moreover, the model takes into consideration the effects of temperature and burnup on thermal conductivity. Therefore, the model is able to predict crack initiation, propagation, and complex morphologies in response to thermal gradients and stress distributions. Several simulations were conducted to investigate the effects of operational and transient conditions on fracture behavior and the resulting cracking patterns. High-burnup fuels exhibit reduced thermal conductivity, elevating temperature gradients and resulting in extensive radial and circumferential cracks. Transient heating rates and temperatures significantly affect fracture patterns, with higher heating rates generating steeper gradients and more irregular crack trajectories. This approach provides critical insights into fuel integrity during accident scenarios and supports the safety evaluation of extended burnup limits. Full article
(This article belongs to the Special Issue Materials for Harsh Environments)
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<p>Realizations of the distinct initiation and propagation of cracks in initially crack-free domains using the stochastic phase-field fracture approach implemented here. The figure illustrates crack development over increasing time steps for three different initial-condition cases, (<b>a</b>–<b>c</b>), under the same applied stress. For each initial condition, time steps progress from left to right.</p>
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<p>An illustration of crack propagation in the pre-existing-crack case. (<b>Top row</b>): a demonstration of crack growth under sufficient strain energy, where cracks propagate horizontally, normal to the applied tension. (<b>Bottom row</b>): a depiction of the absence of crack propagation when the strain energy is insufficient, leading to crack collapse and disappearance.</p>
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<p>Hoop (tangential) and radial stress profiles as functions of radial position in steady-state stress. The figure demonstrates that the analytical solution for the hoop stress aligns precisely with the numerical results.</p>
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<p>(<b>a</b>) Average hoop (tangential) and radial stress profiles as functions of radial position during the transient simulation, captured in the time step just before fracture occurred (0.9 h), highlighting the conditions leading to crack nucleation. (<b>b</b>) Average hoop (tangential) and radial stress profiles as functions of time during the transient simulation, highlighting the significant decline at 0.9 h associated with crack nucleation initiation.</p>
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<p>Comparison of transient and steady-state cases: (<b>a</b>) Steady-state temperature as a function of radial position compared to the start-up transient (detailed in <a href="#sec3dot2-materials-18-01162" class="html-sec">Section 3.2</a>). (<b>b</b>) Average hoop (tangential) stress profiles as functions of radial position during the transient simulation. (<b>c</b>) Radial stress profiles as functions of radial position during the transient simulation. All figures were captured in the time step just before fracture occurred (0.9 h).</p>
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<p>Comparison of transient and steady-state cases: (<b>a</b>) Steady-state temperature as a function of radial position compared to the start-up transient (detailed in <a href="#sec3dot2-materials-18-01162" class="html-sec">Section 3.2</a>). (<b>b</b>) Average hoop (tangential) stress profiles as functions of radial position during the transient simulation. (<b>c</b>) Radial stress profiles as functions of radial position during the transient simulation. All figures were captured in the time step just before fracture occurred (0.9 h).</p>
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<p>Temperature as a function of time during the start-up and power ramp phases, showing centerline and edge temperatures over the 6 h simulation period.</p>
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<p>Final stress profiles at the end of the power ramp: (<b>a</b>) Hoop (tangential) stress. (<b>b</b>) Radial stress.</p>
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<p>Fracture patterns resulting from two distinct cases (<b>a</b>,<b>b</b>) of dynamic stochastic distributions of underlying microstructural evolution, highlighting variations in crack morphology and propagation pathways due to differing stochastic conditions.</p>
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<p>Fracture patterns under varying initial conditions in <math display="inline"><semantics> <mi>η</mi> </semantics></math>, representing distinct initial microstructures, illustrating their influence on crack initiation and propagation behavior and resulting in four distinct fracture morphologies.</p>
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<p>Comparison of fracture patterns under different heat rates: (<b>a</b>) &lt;1 K/s exhibits smoother and less intricate crack propagation and (<b>b</b>) 100 K/s shows more complex and irregular branching.</p>
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<p>Crack profiles of a UO<sub>2</sub> fuel pellet illustrating the propagation of a crack under varying operational phases. (<b>Left</b>): the crack profile of the UO<sub>2</sub> fuel pellet after the start-up phase at <math display="inline"><semantics> <mrow> <mi>t</mi> <mo>=</mo> <mn>1.99</mn> </mrow> </semantics></math> h. (<b>Right</b>): the crack profile of the same fuel pellet after the power ramp phase at <span class="html-italic">t</span> = 6 h.</p>
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<p>Crack propagation patterns in a UO<sub>2</sub> fuel pellet at different heating rates (&lt;1 K/s, 5 K/s, 10 K/s, and 50 K/s) and temperatures (1730 K, 2006 K, and 2302 K). The figure highlights the combined effects of heating rate and temperature on crack morphology within the microstructure.</p>
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<p>A comparison of crack propagation patterns in a UO<sub>2</sub> fuel pellet at two distinct heating rates (&lt;1 K/s and 100 K/s) and temperatures (1730 K, 2006 K, and 2302 K). The figure emphasizes the contrasting crack morphologies observed at the lowest and highest heating rates.</p>
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16 pages, 3338 KiB  
Article
Effects of Different Postharvest Treatments on Fruit Quality, Sucrose Metabolism, and Antioxidant Capacity of ‘Newhall’ Navel Oranges During Storage
by Bo Xiong, Linlv Han, Yinghong Ou, Wenjia Wu, Jialu Wang, Junfei Yao, Yisong Li, Siyu Chen, Taimei Deng, Hongzhen Chen, Chenming Wang, Qingqing Ma, Yujing Fan, Yixuan Li and Zhihui Wang
Plants 2025, 14(5), 802; https://doi.org/10.3390/plants14050802 - 5 Mar 2025
Viewed by 202
Abstract
During the post-harvest storage of citrus, the flavor of fruit gradually fade. In this study, we investigated the effects of different treatments—control check (CK), heat treatment (HT), salicylic acid treatment (SA), and 1-methylcyclopropene treatment (1-MCP)—on the quality of ‘Newhall’ navel oranges, particularly focusing [...] Read more.
During the post-harvest storage of citrus, the flavor of fruit gradually fade. In this study, we investigated the effects of different treatments—control check (CK), heat treatment (HT), salicylic acid treatment (SA), and 1-methylcyclopropene treatment (1-MCP)—on the quality of ‘Newhall’ navel oranges, particularly focusing on sucrose metabolism and related gene expression during storage. Combining the experimental data, we compared the three different treatments with CK. The results showed that the oranges subjected to HT had a significantly higher flavonoid content (26.40 μg) and total phenolic content (19.42 μg) than those used for the CK at the late storage stage, and was also the most effective in slowing the decline in sugar, titratable acid and other indexes, followed by SA, with 1-MCP performing poorly. Quantitative results showed that the three treatments contributed to the increase in sucrose content by elevating the expression of the SPS1 and SPS2 genes involved in sucrose synthesis compared to the CK. However, no clear pattern was observed between the genes involved in sucrose catabolism (SUS1 and SUS3) and sucrose content. These results provided a rationale for the selection of post-harvest treatments to extend the storage life and maintain the quality of ‘Newhall’ navel oranges, with broader implications for the citrus industry. Full article
(This article belongs to the Special Issue Innovative Techniques for Citrus Cultivation)
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<p>Standard curve range and R<sup>2</sup> for rutin (<b>A</b>); standard curve range and R<sup>2</sup> for gallic acid (<b>B</b>).</p>
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<p>Changes in flavonoid (<b>A</b>) and total phenolic contents (<b>B</b>) of fruit pulp during storage. “**” means the result of significance analysis is highly significant (<span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Changes in DPPH free radicals scavenging (<b>A</b>), ABTS free radicals scavenging (<b>B</b>) and FRAP free radicals scavenging (<b>C</b>) in fruit pulp during storage. “**” means the result of significance analysis is highly significant (<span class="html-italic">p</span> &lt; 0.01), “*” means the result of significance analysis is significant (0.01 &lt; <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effect of different treatments on the rate of fruit weight loss during storage. “**” means the result of significance analysis is highly significant (<span class="html-italic">p</span> &lt; 0.01), “*” means the result of significance analysis is significant (0.01 &lt; <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Changes in the titratable acid (<b>A</b>) and total soluble solids contents (<b>B</b>) of fruit pulp during storage. “**” means the result of significance analysis is highly significant (<span class="html-italic">p</span> &lt; 0.01), “*” means the result of significance analysis is significant (0.01 &lt; <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Changes in total sugar (<b>A</b>), fructose (<b>B</b>), glucose (<b>C</b>) and sucrose (<b>D</b>) contents of fruit pulp during storage. “**” means the result of significance analysis is highly significant (<span class="html-italic">p</span> &lt; 0.01), “*” means the result of significance analysis is significant (0.01 &lt; <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Changes in SPS (<b>A</b>), SS synthesis direction (<b>B</b>) and SS catabolism direction (<b>C</b>) enzyme activities in fruit pulp during storage. “**” means the result of significance analysis is highly significant (<span class="html-italic">p</span> &lt; 0.01), “*” means the result of significance analysis is significant (0.01 &lt; <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Expression of genes involved in sucrose synthesis and catabolism in Newhall navel orange. (<b>A</b>) Expression levels of <span class="html-italic">SPS1</span> in navel orange pulp. (<b>B</b>) Expression level of <span class="html-italic">SPS2</span> in navel orange pulp. (<b>C</b>) Expression level of <span class="html-italic">SUS1</span> in navel orange pulp. (<b>D</b>) Expression level of <span class="html-italic">SUS3</span> in navel orange pulp.</p>
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<p>Effects of different postharvest treatments on fruit quality, sucrose metabolism and antioxidant capacity of ‘Newhall’ navel oranges during storage. Different colors represent different values of <math display="inline"><semantics> <mrow> <mstyle scriptlevel="0" displaystyle="true"> <mfrac> <mrow> <mi>X</mi> <mo>−</mo> <msub> <mi>X</mi> <mi>min</mi> </msub> </mrow> <mrow> <msub> <mi>X</mi> <mi>max</mi> </msub> <mo>−</mo> <msub> <mi>X</mi> <mi>min</mi> </msub> </mrow> </mfrac> </mstyle> </mrow> </semantics></math> (<span class="html-italic">X</span> represents the measured value of each index, <span class="html-italic">X</span><sub>min</sub> represents the minimum value of the corresponding index, and <span class="html-italic">X</span><sub>max</sub> is the maximum value); higher values are redder and lower are greener.</p>
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13 pages, 2341 KiB  
Article
K-Means Clustering Reveals Long-Term Thyrotropin Receptor Antibody Patterns in Graves’ Disease: Insights from a 10-Year Study with Implications for Graves’ Orbitopathy
by Jungyul Park, Jae Hyun Kim, Hee-young Choi, Jinmi Kim, Sang Soo Kim and Suk-woo Yang
J. Clin. Med. 2025, 14(5), 1734; https://doi.org/10.3390/jcm14051734 - 4 Mar 2025
Viewed by 184
Abstract
Background/Objectives: We aimed to explore long-term trajectories of thyroid-stimulating hormone receptor antibody (TRAb) in patients with Graves’ disease (GD) and to identify key factors associated with TRAb normalization. We also investigated whether these trajectories correlate with Graves’ orbitopathy (GO) comorbidity. Methods: [...] Read more.
Background/Objectives: We aimed to explore long-term trajectories of thyroid-stimulating hormone receptor antibody (TRAb) in patients with Graves’ disease (GD) and to identify key factors associated with TRAb normalization. We also investigated whether these trajectories correlate with Graves’ orbitopathy (GO) comorbidity. Methods: We retrospectively reviewed 403 patients with GD who had an initial TRAb level ≥ 1.5 IU/L between 2010 and 2021, monitoring their TRAb levels for at least 3 years. K-means clustering was performed to categorize patients into distinct TRAb change patterns (A, B, C, D). We employed a Cox regression–based time-to-event model, expressing results as “Survival ratio” rather than the conventional Hazard ratio, to reflect the proportion of patients achieving TRAb normalization over time. Key variables included age, sex, initial TRAb, and GO comorbidity. Results: Four unique TRAb patterns emerged, differing primarily in baseline TRAb levels, duration of GD, and treatment approaches. Pattern A demonstrated the highest TRAb normalization rate (96%), whereas Patterns B (80%), C (29%), and D (13%) showed lower probabilities. Regrouping into A vs. BCD further emphasized the distinct normalization profile of Pattern A. A higher “Survival ratio” was observed in female patients and those with baseline TRAb < 6.14 IU/L. In contrast, patients whose TRAb levels were ≥6.14 IU/L frequently exhibited persistently elevated values over a decade. GO comorbidity did not significantly differ among the four patterns. Conclusions: K-means clustering revealed four unique TRAb change patterns in GD, with baseline TRAb (stratified by the median of 6.14 IU/L) and sex emerging as significant predictors of normalization. These findings highlight the importance of early TRAb monitoring and tailored therapeutic strategies, particularly for those with persistently elevated TRAb levels. Full article
(This article belongs to the Section Endocrinology & Metabolism)
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<p>Four Patterns of Long-Term TRAb Changes in Graves’ Disease. Four distinct patterns of thyroid-stimulating hormone receptor antibody (TRAb) change over time in Graves’ disease: (<b>A</b>–<b>D</b>). Each pattern demonstrated a different baseline, rate of change, and normalization rate of TRAb. TRAb, thyroid-stimulating hormone receptor antibody.</p>
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<p>Kaplan-Meier Curves of TRAb Normalization Across Overall Patients and Patterns in Graves’ Disease. (<b>A</b>) <a href="#jcm-14-01734-f002" class="html-fig">Figure 2</a>A depicts the Kaplan–Meier survival curve, demonstrating the time to thyroid-stimulating hormone receptor antibody (TRAb) normalization among the total patients over a 10-year follow-up period. The median time of normalization was observed to be 3 years, by the end of the 10-year period, approximately 80% of the patients had achieved TRAb normalization. (<b>B</b>) Kaplan–Meier curve of TRAb normalization in each of the four TRAb change patterns. A and B achieved a high normalization rate compared to C and D. A revealed a faster TRAb normalization compared to B while C showed a faster TRAb normalization compared to D. (<b>C</b>) Kaplan–Meier curve of TRAb normalization in A and BCD patterns. A showed a higher and faster normalization pattern compared to BCD. TRAb, thyroid-stimulating hormone receptor antibody. The black dashed line indicates the time point at which 50% of patients achieved TRAb normalization.</p>
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23 pages, 5994 KiB  
Article
Three-Dimensional Distribution of Arctic Aerosols Based on CALIOP Data
by Yukun Sun and Liang Chang
Remote Sens. 2025, 17(5), 903; https://doi.org/10.3390/rs17050903 - 4 Mar 2025
Viewed by 195
Abstract
Tropospheric aerosols play an important role in the notable warming phenomenon and climate change occurring in the Arctic. The accuracy of Cloud–Aerosol Lidar with Orthogonal Polarization (CALIOP) aerosol optical depth (AOD) and the distribution of Arctic AOD based on the CALIOP Level 2 [...] Read more.
Tropospheric aerosols play an important role in the notable warming phenomenon and climate change occurring in the Arctic. The accuracy of Cloud–Aerosol Lidar with Orthogonal Polarization (CALIOP) aerosol optical depth (AOD) and the distribution of Arctic AOD based on the CALIOP Level 2 aerosol products and the Aerosol Robotic Network (AERONET) AOD data during 2006–2021 were analyzed. The distributions, trends, and three-dimensional (3D) structures of the frequency of occurrences (FoOs) of different aerosol subtypes during 2006–2021 are also discussed. We found that the CALIOP AOD exhibited a high level of agreement with AERONET AOD, with a correlation coefficient of approximately 0.67 and an RMSE of less than 0.1. However, CALIOP usually underestimated AOD over the Arctic, especially in wet conditions during the late spring and early summer. Moreover, the Arctic AOD was typically higher in winter than in autumn, summer, and spring. Specifically, polluted dust (PD), dust, and clean marine (CM) were the dominant aerosol types in spring, autumn, and winter, while in summer, ES (elevated smoke) from frequent wildfires reached the highest FoOs. There were increasing trends in the FoOs of CM and dust, with decreasing trends in the FoOs of PD, PC (polluted continental), and DM (dusty marine) due to Arctic amplification. In general, the vertical distribution patterns of different aerosol types showed little seasonal variation, but their horizontal distribution patterns at various altitudes varied by season. Furthermore, locally sourced aerosols such as dust in Greenland, PD in eastern Siberia, and ES in middle Siberia can spread to surrounding areas and accumulate further north, affecting a broader region in the Arctic. Full article
(This article belongs to the Section Atmospheric Remote Sensing)
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<p>Spatial distribution of the AERONET stations in the region of interest.</p>
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<p>Scatterplot comparing CALIOP and AERONET AOD over the Arctic during 2006–2021. The dashed line represents the 1:1 line, while the red line represents the fitted line.</p>
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<p>(<b>a</b>) Monthly mean AOD from CALIOP and AERONET, (<b>b</b>) correlation coefficient between monthly mean AOD from CALIOP and AERONET, and (<b>c</b>) monthly RMSE and (<b>d</b>) RMB of CALIOP against AERONET AOD over the Arctic during 2006–2021.</p>
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<p>Spatial distributions of seasonal mean AOD over the Arctic during 2006–2021.</p>
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<p>Average proportions of seven different types of aerosols over the Arctic during 2006–2021.</p>
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<p>Average proportions of all types of Arctic aerosols in different seasons during 2006–2021.</p>
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<p>M-K trend analysis results (including Z value, time series of UF and UB values) of FoOs of (<b>a</b>) CM, (<b>b</b>) dust, (<b>c</b>) PC, (<b>d</b>) PD, (<b>e</b>) ES, and (<b>f</b>) DM during 2006–2021. Dashed lines represent the confidence intervals for UF values at the 95% significance level or greater.</p>
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<p>Vertical profiles of mean FoOs of different types of aerosols over the Arctic in each season during 2006–2021.</p>
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<p>Horizontal distribution of the most dominant aerosol types at different altitude ranges over the Arctic in each season during 2006–2021.</p>
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<p>Three-dimensional structure of dust in spring over GLZ during 2006–2021, with each latitude–vertical cross-section made along the longitudes at 10° intervals (top panel), and each longitude–vertical cross-section made along the latitudes at 10° intervals (bottom panel).</p>
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<p>Same as <a href="#remotesensing-17-00903-f010" class="html-fig">Figure 10</a> but for the three-dimensional structure of PD in spring over ESZ during 2006–2021.</p>
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<p>Same as <a href="#remotesensing-17-00903-f011" class="html-fig">Figure 11</a> but for the three-dimensional structure of ES in summer over MSZ during 2006–2021.</p>
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24 pages, 475 KiB  
Article
Price Gaps and Volatility: Do Weekend Gaps Tend to Close?
by Marnus Janse van Rensburg and Terence Van Zyl
J. Risk Financial Manag. 2025, 18(3), 132; https://doi.org/10.3390/jrfm18030132 - 3 Mar 2025
Viewed by 183
Abstract
This study investigates weekend price gaps in three major stock market indices—the Dow Jones Industrial Average (DJIA), NASDAQ, and Germany’s DAX—from 2013 to 2023, using high-frequency (5 min) data to explore whether gap movements arise from random volatility or reflect systematic market tendencies. [...] Read more.
This study investigates weekend price gaps in three major stock market indices—the Dow Jones Industrial Average (DJIA), NASDAQ, and Germany’s DAX—from 2013 to 2023, using high-frequency (5 min) data to explore whether gap movements arise from random volatility or reflect systematic market tendencies. We examine 205 weekend gaps in the DJIA, 270 in NASDAQ, and 406 in the DAX. Two principal hypotheses guide our inquiry as follows: (i) whether price movements into the gap are primarily driven by increased volatility and (ii) whether larger gaps are associated with heightened volatility. Employing Chi-square tests for the independence and linear regression analyses, our results show no strong, universal bias towards closing gaps at shorter distances across all three indices. However, at medium-to-large distances, significant directional patterns emerge, particularly in the DAX. This outcome challenges the assumption that weekend gaps necessarily “fill” soon after they open. Moreover, larger gap sizes correlate with elevated volatility in both the DJIA and NASDAQ, underscoring that gaps can serve as leading indicators of near-term price fluctuations. These findings suggest that gap-based anomalies vary by market structure and geography, raising critical questions about the universality of efficient market principles and offering practical insights for risk management and gap-oriented trading strategies. Full article
(This article belongs to the Special Issue Machine Learning Based Risk Management in Finance and Insurance)
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<p>Hit rate comparison up to 990 points for DJIA (US30) showing flattening trends.</p>
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<p>Hit rate comparison up to 990 points for NASDAQ (US100) showing flattening trends.</p>
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<p>Hit rate comparison up to 990 points for Dax showing flattening trends.</p>
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<p>Focused view hit rate comparison for DJIA (US30).</p>
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<p>Focused view hit rate comparison for Dax.</p>
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<p>Focused view hit rate comparison for NASDAQ (US100).</p>
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13 pages, 888 KiB  
Article
Night Work and Social Jet Lag: Pathways to Arterial Stiffness?
by Waléria D. P. Gusmão, Aline Silva-Costa, Victor M. Silva and Claudia R. C. Moreno
Clocks & Sleep 2025, 7(1), 10; https://doi.org/10.3390/clockssleep7010010 - 3 Mar 2025
Viewed by 139
Abstract
Cardiovascular diseases are the leading cause of morbidity and mortality worldwide. These conditions, characterized by multifactorial etiology, are associated with arterial stiffness, and adequate sleep serves as a preventive factor. Professionals engaged in night work are at an increased risk of premature vascular [...] Read more.
Cardiovascular diseases are the leading cause of morbidity and mortality worldwide. These conditions, characterized by multifactorial etiology, are associated with arterial stiffness, and adequate sleep serves as a preventive factor. Professionals engaged in night work are at an increased risk of premature vascular aging due to potential disruption of the sleep–wake cycle and sleep restriction. The aim of this study was to assess the relationship between duration of exposure to night work and arterial stiffness in nursing professionals. A total of 63 nursing professionals working rotating shifts participated in the study. Arterial stiffness was measured using oscillometric pulse wave velocity, and sleep–wake patterns were monitored using actigraphy. Path analysis revealed no direct association between duration of night work exposure and arterial stiffness in the professionals studied. However, an increase of 1 standard deviation (SD) in social jet lag duration was significantly associated with a 0.212 SD increase in perceived stress (p = 0.047). Furthermore, an increase of 1 SD in social jet lag duration was significantly associated with a 0.093 SD increase in the highest pulse wave velocity (p = 0.034). Thus, an association was found between increased social jet lag and elevated pulse wave velocity, an independent predictor of higher cardiovascular risk. Full article
(This article belongs to the Special Issue Shift-Work and the Individual II)
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<p>Path diagram for effects of length of exposure to night work (years) on pulse wave velocity. Values presented refer to standardized coefficients of associations tested, with items reaching statistical significance highlighted in bold. Analyses were adjusted for gender and age. Legend: ENW = exposure to night work, PST = perceived stress, SJL = social jet lag, SLD = sleep duration, HER = heart rate, SLQ = sleep quality, PWV = pulse wave velocity.</p>
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<p>Estimated model for association between length of exposure to night work and pulse wave velocity using path analysis. Legend: ENW = exposure to night work, PST = perceived stress, SJL = social jet lag, SLD = sleep duration, HER = heart rate, SLQ = sleep quality, PWV = pulse wave velocity.</p>
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23 pages, 6275 KiB  
Article
The Evolution and Drivers of Hydrochemistry in Nam Co Lake, the Third Largest Lake on the Tibetan Plateau, over the Last 20 Years
by Wenhao Ren, Yanyan Gao, Hui Qian, Wengang Qu, Xiaoxin Shi, Yaoming Ma, Zhongbo Su and Weiqiang Ma
Sustainability 2025, 17(5), 2180; https://doi.org/10.3390/su17052180 - 3 Mar 2025
Viewed by 220
Abstract
The Tibetan Plateau, a critical regulator of the global water cycle and climate system, represents a highly sensitive region to environmental changes, with significant implications for sustainable development. This study focuses on Nam Co Lake, the third largest lake on the Tibetan Plateau, [...] Read more.
The Tibetan Plateau, a critical regulator of the global water cycle and climate system, represents a highly sensitive region to environmental changes, with significant implications for sustainable development. This study focuses on Nam Co Lake, the third largest lake on the Tibetan Plateau, and investigates the hydrochemical evolution of the lake and the driving mechanisms in regard to the lake–river–groundwater system within the Nam Co Basin over the last 20 years. Our findings provide critical insights for sustainable water resource management in regard to fragile alpine lake ecosystems. The hydrochemical analyses revealed distinct temporal patterns in the total dissolved solids, showing an increasing trend during the 2000s, followed by a decrease in the 2010s. Piper diagrams demonstrated a gradual change in the anion composition from the Cl type to the HCO3 type over the study period. The ion ratio analyses identified rock weathering (particularly silicate, halite, sulfate, and carbonate weathering), ion exchange, and evaporation processes as primary controlling processes, with notable differences between water bodies: while all four weathering processes contributed to the lake’s water chemistry, only halite and carbonate weathering influenced river and groundwater compositions. The comparative analysis revealed more pronounced ion exchange processes in lake water than in river and groundwater systems. Climate change impacts were manifested through two primary mechanisms: (1) enhanced evaporation, leading to elevated ion concentrations and isotopic enrichment; and (2) temperature-related effects on the water chemistry through increased dilution from precipitation and glacial meltwater. Understanding these mechanisms is essential for developing adaptive strategies to maintain water security and ecosystem sustainability. The relationships established between climate drivers and hydrochemical responses provide a scientific basis for predicting future changes and informing sustainable management practices for inland lake systems across the Tibetan Plateau. Full article
(This article belongs to the Section Environmental Sustainability and Applications)
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<p>(<b>a</b>) Location of Nam Co Lake on the Tibetan Plateau; (<b>b</b>) sampling sites in this study; (<b>c</b>) average annual temperature, precipitation, radiation, and relative humidity from 2011 to 2017; (<b>d</b>) monthly mean temperature, precipitation, radiation, and relative humidity; (<b>e</b>) non-monsoon wind speed; and (<b>f</b>) monsoon wind speed. The meteorological dataset is from Ma, Hu [<a href="#B42-sustainability-17-02180" class="html-bibr">42</a>].</p>
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<p>Major ion composition of Nam Co Basin: (<b>a</b>) Nam Co Lake water, (<b>b</b>) river water.</p>
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<p>Correlation coefficients of the major ions in Nam Co Lake water.</p>
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<p>Correlation coefficients of the major ions in the rivers flowing into Nam Co Lake.</p>
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<p>Piper diagram showing the hydrochemistry type of the water samples.</p>
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<p>Gibbs diagrams of: (<b>a</b>) TDS versus Na/(Na + Ca), (<b>b</b>) TDS versus Cl/(Cl + HCO<sub>3</sub>).</p>
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<p>Saturation index of major minerals in river, lake, and groundwater.</p>
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<p>Scatterplot of (Na* + K)/TZ versus (Ca + Mg)/TZ, where Na* = Na<sup>+</sup> − Cl<sup>−</sup>, TZ = Na<sup>+</sup> + K<sup>+</sup> + Ca<sup>2+</sup> + Mg<sup>2+</sup>.</p>
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<p>Scatterplot of: (<b>a</b>) Na<sup>+</sup> versus Cl<sup>−</sup>, (<b>b</b>) Ca<sup>2+</sup> versus SO<sub>4</sub><sup>2−</sup>, (<b>c</b>) Ca<sup>2+</sup> + Mg<sup>2+</sup> versus HCO<sub>3</sub><sup>−</sup>, (<b>d</b>) Ca<sup>2+</sup> versus HCO<sub>3</sub><sup>−</sup>, and (<b>e</b>) Mg<sup>2+</sup> versus Ca<sup>2+</sup>.</p>
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<p>Scatterplot of Ca<sup>2+</sup> + Mg<sup>2+</sup> − HCO<sub>3</sub><sup>−</sup> − SO<sub>4</sub><sup>2−</sup> versus Na* + K<sup>+</sup>.</p>
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<p>Scatterplot of chlor-alkaline indices.</p>
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<p>Scatterplot of the δD–δ<sup>18</sup>O in the water samples. The TLWL, TRWL, and LMWL are cited from the previous reports by Yuan, Sheng [<a href="#B72-sustainability-17-02180" class="html-bibr">72</a>], Hren, Bookhagen [<a href="#B73-sustainability-17-02180" class="html-bibr">73</a>], and Kang, Yongping [<a href="#B74-sustainability-17-02180" class="html-bibr">74</a>], respectively.</p>
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<p>Average annual temperature, annual precipitation, and potential evapotranspiration in Nam Co Basin.</p>
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24 pages, 9546 KiB  
Article
Physiological Evaluation of User Experience in Unstable Automated Driving: A Comparative Study
by Sooncheon Hwang and Dongmin Lee
Appl. Sci. 2025, 15(5), 2683; https://doi.org/10.3390/app15052683 - 3 Mar 2025
Viewed by 247
Abstract
While automated-driving technology is advancing rapidly, human-centered research is still in its early stages. Research on negative user responses to automated driving is particularly limited in complex roadway environments such as roundabouts, where driving decisions typically depend on driver judgment and traffic conditions. [...] Read more.
While automated-driving technology is advancing rapidly, human-centered research is still in its early stages. Research on negative user responses to automated driving is particularly limited in complex roadway environments such as roundabouts, where driving decisions typically depend on driver judgment and traffic conditions. In these environments, automated-driving vehicles may exhibit unstable behaviors, such as sudden stops or forced intersection entries. Since successful interaction between users and automated systems is critical for widespread adoption, understanding when and how automated driving negatively affects users is essential. This study investigated user psychological responses and corresponding physiological changes during unstable automated-driving situations. Using a virtual environment driving simulator, we compared two scenarios: sensor-only automated driving (A.D(S)), which exhibited unstable driving patterns; and cooperative automated driving (A.D(C)), which achieved more stable performance through infrastructure communication. We analyzed the responses of 30 participants using electromyography (EMG) measurements and pupil diameter tracking, supplemented by qualitative evaluations. Results showed that A.D(S) participants experienced higher levels of frustration during prolonged waiting times compared to A.D(C) participants. In addition, sudden braking events elicited startle responses characterized by pupil dilation and elevated arm-muscle EMG readings. This research advances our understanding of how automated-driving behaviors affect user experience and emphasizes the importance of human factors in the development of automated-driving technologies. Full article
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<p>The driving simulator used in the experiment.</p>
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<p>EMG measurement device (<b>a</b>), eye-tracking device (<b>b</b>), and measurement target (<b>c</b>) used in the experiment.</p>
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<p>Overview of virtual road design and implementation of key sections.</p>
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<p>Distribution of driving experience of participants in the experiment.</p>
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<p>The scene of experiment.</p>
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<p>Changes in EMG (leg) activation values of participants according to A.D styles at different segmentations of roundabout.</p>
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<p>EMG (leg) activation values per roundabout segmentation.</p>
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<p>Changes in EMG (arm) activation values of participants according to A.D styles at different segmentations of merging.</p>
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<p>EMG (arm) activation values per segmentation of merging.</p>
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<p>Changes in EMG (leg) activation values of participants according to A.D styles at different segmentation of unsignalized intersection.</p>
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<p>Error bars of EMG (leg) activation values per segmentation of unsignalized intersection.</p>
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<p>Changes in pupil diameter of participants according to A.D styles at different segmentation of unsignalized intersection.</p>
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<p>Error bars of pupil diameter per segmentation of the unsignalized intersection.</p>
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<p>Changes in pupil diameter of participants according to A.V styles at different segmentation of crosswalk.</p>
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<p>Error bars of pupil diameter per segmentation of crosswalk.</p>
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<p>Evaluation results of participant frustration levels at roundabouts by automated-driving styles.</p>
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25 pages, 2715 KiB  
Article
Spatial and Temporal Pervasiveness of Indigenous Settlement in Oak Landscapes of Southern New England, US, During the Late Holocene
by Stephen J. Tulowiecki, Brice B. Hanberry and Marc D. Abrams
Land 2025, 14(3), 525; https://doi.org/10.3390/land14030525 - 3 Mar 2025
Viewed by 295
Abstract
The relative influence of climate and Indigenous cultural burning on past forest composition in southern New England, US, remains debated. Employing varied analyses, this study compared data on Indigenous settlements from over 5000 years before present (YBP) with relative tree abundances estimated from [...] Read more.
The relative influence of climate and Indigenous cultural burning on past forest composition in southern New England, US, remains debated. Employing varied analyses, this study compared data on Indigenous settlements from over 5000 years before present (YBP) with relative tree abundances estimated from pollen and land survey records. Results suggested that fire-tolerant vegetation, mainly oak (Quercus spp.), was more abundant near Indigenous settlements from 4955 to 205 YBP (i.e., 86–91% fire-tolerant trees), and significantly (p < 0.05) higher from 3205 to 205 YBP; fire-tolerant vegetation was less abundant away from settlements, where it also experienced greater fluctuations. Correlative models showed that warmer temperatures and distance to Indigenous settlement, which are both indicators of fire, were important predictors in the 17th–18th centuries of fire-tolerant tree abundance; soil variables were less important and their relationships with vegetation were unclear. A marked increase in oak abundance occurred above 8 °C mean annual temperature and within 16 km of major Indigenous settlements. Pyrophilic vegetation was most correlated with distance to Indigenous villages in areas with 7–9 °C mean annual temperature, typical of higher latitudes and elevations that usually supported northern hardwoods. Widespread burning in warmer areas potentially weakened relationships between distance and pyrophilic abundance. Indigenous land use imprinted upon warmer areas conducive to burning created patterns in fire-tolerant vegetation in southern New England, plausibly affecting most low-elevation areas. Results imply that restoration of fire-dependent species and of barrens, savannas, and woodlands of oak in southern New England benefit from cultural burning. Full article
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<p>(<b>a</b>) Indigenous geography with 17th century settlement areas [<a href="#B49-land-14-00525" class="html-bibr">49</a>], 17th century villages [<a href="#B50-land-14-00525" class="html-bibr">50</a>], notable 16th–18th century archaeological sites [<a href="#B51-land-14-00525" class="html-bibr">51</a>], radiocarbon-dated archaeological sites [<a href="#B52-land-14-00525" class="html-bibr">52</a>], and 17th century major trails [<a href="#B50-land-14-00525" class="html-bibr">50</a>]. The same Indigenous site can appear in multiple layers. (<b>b</b>) Relative abundance of pyrophilic tree taxa circa 17th–18th centuries CE [<a href="#B45-land-14-00525" class="html-bibr">45</a>], charcoal from palynology sites, and mean annual temperature [<a href="#B53-land-14-00525" class="html-bibr">53</a>]. Charcoal records are scaled from 0 (lowest) to 1 (highest) for each dataset to create a common scale, because they are provided in different units: mean pre-European charcoal-to-pollen ratios [<a href="#B33-land-14-00525" class="html-bibr">33</a>,<a href="#B35-land-14-00525" class="html-bibr">35</a>] and mean number of charcoal pieces [<a href="#B30-land-14-00525" class="html-bibr">30</a>]. Time periods vary across charcoal sites, and some records include post-European charcoal [<a href="#B30-land-14-00525" class="html-bibr">30</a>].</p>
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<p>Oak relative abundance [<a href="#B71-land-14-00525" class="html-bibr">71</a>] from 2005 BCE to 1745 CE (3955–205 years before present [YBP]), and number of archaeological dates [<a href="#B52-land-14-00525" class="html-bibr">52</a>] from the preceding 250 yr. Abundance estimates did not exist for some coastal areas.</p>
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<p>Oak relative abundance [<a href="#B71-land-14-00525" class="html-bibr">71</a>] from 2005 BCE to 1745 CE (3955–205 years before present [YBP]), and number of archaeological dates [<a href="#B52-land-14-00525" class="html-bibr">52</a>] from the preceding 250 yr. Abundance estimates did not exist for some coastal areas.</p>
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<p>(<b>a</b>) Oak (<span class="html-italic">Quercus</span> spp.) and (<b>b</b>) pyrophilic vegetation relative abundance from 3005 BCE to 1745 CE (4955–205 years before present), in archaeological site presence and absence locations at 24 km resolution. Non-significant differences are indicated with an asterisk on the <span class="html-italic">x</span>-axis labels.</p>
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25 pages, 2703 KiB  
Review
Role of Gut Microbial Metabolites in Ischemic and Non-Ischemic Heart Failure
by Mohammad Reza Hatamnejad, Lejla Medzikovic, Ateyeh Dehghanitafti, Bita Rahman, Arjun Vadgama and Mansoureh Eghbali
Int. J. Mol. Sci. 2025, 26(5), 2242; https://doi.org/10.3390/ijms26052242 - 2 Mar 2025
Viewed by 296
Abstract
The effect of the gut microbiota extends beyond their habitant place from the gastrointestinal tract to distant organs, including the cardiovascular system. Research interest in the relationship between the heart and the gut microbiota has recently been emerging. The gut microbiota secretes metabolites, [...] Read more.
The effect of the gut microbiota extends beyond their habitant place from the gastrointestinal tract to distant organs, including the cardiovascular system. Research interest in the relationship between the heart and the gut microbiota has recently been emerging. The gut microbiota secretes metabolites, including Trimethylamine N-oxide (TMAO), short-chain fatty acids (SCFAs), bile acids (BAs), indole propionic acid (IPA), hydrogen sulfide (H2S), and phenylacetylglutamine (PAGln). In this review, we explore the accumulating evidence on the role of these secreted microbiota metabolites in the pathophysiology of ischemic and non-ischemic heart failure (HF) by summarizing current knowledge from clinical studies and experimental models. Elevated TMAO contributes to non-ischemic HF through TGF-ß/Smad signaling-mediated myocardial hypertrophy and fibrosis, impairments of mitochondrial energy production, DNA methylation pattern change, and intracellular calcium transport. Also, high-level TMAO can promote ischemic HF via inflammation, histone methylation-mediated vascular fibrosis, platelet hyperactivity, and thrombosis, as well as cholesterol accumulation and the activation of MAPK signaling. Reduced SCFAs upregulate Egr-1 protein, T-cell myocardial infiltration, and HDAC 5 and 6 activities, leading to non-ischemic HF, while reactive oxygen species production and the hyperactivation of caveolin-ACE axis result in ischemic HF. An altered BAs level worsens contractility, opens mitochondrial permeability transition pores inducing apoptosis, and enhances cholesterol accumulation, eventually exacerbating ischemic and non-ischemic HF. IPA, through the inhibition of nicotinamide N-methyl transferase expression and increased nicotinamide, NAD+/NADH, and SIRT3 levels, can ameliorate non-ischemic HF; meanwhile, H2S by suppressing Nox4 expression and mitochondrial ROS production by stimulating the PI3K/AKT pathway can also protect against non-ischemic HF. Furthermore, PAGln can affect sarcomere shortening ability and myocyte contraction. This emerging field of research opens new avenues for HF therapies by restoring gut microbiota through dietary interventions, prebiotics, probiotics, or fecal microbiota transplantation and as such normalizing circulating levels of TMAO, SCFA, BAs, IPA, H2S, and PAGln. Full article
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<p><b>Microbiota metabolites in the gut–heart axis.</b> (<b>A</b>) After consuming a regular diet, gastrointestinal enzymes take them apart into micronutrients such as betaine, L-carnitine, phosphatidylcholine, tryptophan, cysteine, phenylalanine, and non-digestible carbohydrates, including fibers such as inulin, pectin, and resistant starch. (<b>B</b>) The gut microbiota converts food-derived compounds into TMA, SCFAs, IPA, H<sub>2</sub>S, and phenylacetic acid (PAA). Also, it changes the duodenum-released primary bile acids into secondary bile acids. (<b>C</b>,<b>D</b>) They are reabsorbed into the portal vein and enter the liver. Flavin-containing Monooxygenase (FMO) transforms TMA into TMAO and releases it into the hepatic vein. Hepatocytes and enterocytes consume most SCFAs and IPA to tighten their intercellular junction and maintain intestinal integrity; the rest are released into the systemic circulation. In addition, secondary bile acids are either reabsorbed by the liver and go back to enterohepatic circulation or enter the systemic circulation to ultimately affect the heart. Microbiota-driven H<sub>2</sub>S regulates inflammation and tissue repair within the GI tract and as released circular gasotransmitter facilitates vasodilation and other systemic effects. Liver PAA conjugation with glutamine results in PAGln production and secretion into the portal vein and subsequently in systemic circulation.</p>
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<p><b>Gut dysbiosis derivatives in experimental models of ischemic and non-ischemic HF.</b> (<b>A</b>) Following gut dysbiosis and increased TMAO, either myocardial hypertrophy and fibrosis through TGF-ß/Smad signaling pathways and altered DNA methylation pattern or myocardial dysfunction by calcium transport and energy production impairment can lead to non-ischemic HF. A high level of TMAO accelerates inflammatory pathways, platelet hyperactivity, cholesterol accumulation, and foam cell formation, which can all lead to thrombosis and clot formation in ischemic HF. Furthermore, TMAO primes MAPK signaling, leading to ferroptosis-mediated cardiomyopathy. In addition, histone methylation-mediated chromatin remodeling leading to endothelial–myofibroblast transition and vascular fibrosis results in ischemic HF. (<b>B</b>) Reduction in SCFAs after gut dysbiosis upregulates Egr-1 protein and T-cell myocardial infiltration, and enhances HDAC 5 and 6 activities that, through the MKK3/P38/PRAK pathway, causes less angiogenesis and more apoptosis, resulting in non-ischemic HF. Also, SCFAs decrement through enhancement in ROS and inflammatory cytokines production and C3/CAV-1/ACE-2 axis activation can lead to ischemic HF. (<b>C</b>) Changes in BAs, such as reduced deoxycholic acid and increased taurocholate, stimulate IL-1 and IL-1ß expression and worsen contractility, respectively, and affect mitochondrial apoptosis, leading to non-ischemic and ischemic HF through infarct expansion; in addition, with BAs reduction, cholesterol accumulates and plaque formation enhances and myocardium becomes prone to ischemic HF.</p>
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31 pages, 14554 KiB  
Article
The Spatiotemporal Fluctuations of Extreme Rainfall and Their Potential Influencing Factors in Sichuan Province, China, from 1970 to 2022
by Lin Bai, Tao Liu, Agamo Sha and Dinghong Li
Remote Sens. 2025, 17(5), 883; https://doi.org/10.3390/rs17050883 - 1 Mar 2025
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Abstract
Utilizing daily data gathered from 63 meteorological stations across Sichuan Province between 1970 and 2022, this study investigates the spatial and temporal shifts in extreme precipitation patterns, alongside the connections between changes in extreme precipitation indices (EPIs) and the underlying drivers, such as [...] Read more.
Utilizing daily data gathered from 63 meteorological stations across Sichuan Province between 1970 and 2022, this study investigates the spatial and temporal shifts in extreme precipitation patterns, alongside the connections between changes in extreme precipitation indices (EPIs) and the underlying drivers, such as geographic characteristics and atmospheric circulation influences, within the region. The response of precipitation to these factors was examined through various methods, including linear trend analysis, the Mann–Kendall test, cumulative anomaly analysis, the Pettitt test, R/S analysis, Pearson correlation analysis, and wavelet transformation. The findings revealed that (1) Sichuan Province’s EPIs generally show an upward trend, with the simple daily intensity index (SDII) demonstrating the most pronounced increase. Notably, the escalation in precipitation indices was more substantial during the summer months compared to other seasons. (2) The magnitude of extreme precipitation variations showed a rising pattern in the plateau regions of western and northern Sichuan, whereas a decline was observed in the central and southeastern basin areas. (3) The number of days with precipitation exceeding 5 mm (R5mm), 10 mm (R10mm), and 20 mm (R20mm) all exhibited a significant change point in 2012, surpassing the 95% significance threshold. The future projections for EPIs, excluding consecutive dry days (CDDs), align with historical trends and suggest a continuing possibility of an upward shift. (4) Most precipitation indices, with the exception of CDDs, demonstrated a robust positive correlation with longitude and a negative correlation with both latitude and elevation. Except for the duration indicators (CDDs, CWDs), EPIs generally showed a gradual decrease with increasing altitude. (5) Atmospheric circulation patterns were found to have a substantial impact on extreme precipitation events in Sichuan Province, with the precipitation indices showing the strongest associations with the Atlantic Multidecadal Oscillation (AMO), the Sea Surface Temperature of the East Central Tropical Pacific (Niño 3.4), and the South China Sea Summer Monsoon Index (SCSSMI). Rising global temperatures and changes in subtropical high pressure in the western Pacific may be deeper factors contributing to changes in extreme precipitation. These insights enhance the understanding and forecasting of extreme precipitation events in the region. Full article
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Figure 1

Figure 1
<p>Geomorphological types and meteorological station distribution of Sichuan Province. L: Low-elevation, M: Mid-elevation, H-M: High-to-mid elevation, H: High-elevation, E: Extreme-elevation.</p>
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<p>Linear trends and five-year moving averages of EPIs. (<b>a</b>) Linear trend of CDD. (<b>b</b>) Linear trend of CWD. (<b>c</b>) Linear trend of SDII. (<b>d</b>) Linear trend of RX1day. (<b>e</b>) Linear trend of R20mm. (<b>f</b>) Linear trend of PRCPTOT. (<b>g</b>) Linear trend of R95P.</p>
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<p>Spatial distribution patterns of sites in EPIs and mean annual precipitation distribution. (<b>a</b>) Spatial distribution of CDD. (<b>b</b>) Spatial distribution of CWD. (<b>c</b>) Spatial distribution of SDII. (<b>d</b>) Spatial distribution of RX1day. (<b>e</b>) Spatial distribution of R20mm. (<b>f</b>) Spatial distribution of PRCPTOT. (<b>g</b>) Spatial distribution of R95P. (<b>h</b>) Average annual precipitation distribution.</p>
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<p>Seasonally averaged linear trends in EPIs. (<b>a</b>) Seasonal trends of CDD. (<b>b</b>) Seasonal trends of CWD. (<b>c</b>) Seasonal trends of SDII. (<b>d</b>) Seasonal trends of RX1day. (e) Seasonal trends of R20mm. (<b>f</b>) Seasonal trends of PRCPTPT. (<b>g</b>) Seasonal trends of R95P. (green: Spring, blue: Summer, yellow: Autumn, black: Winter).</p>
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<p>Seasonally averaged linear trends in EPIs. (<b>a</b>) Seasonal trends of CDD. (<b>b</b>) Seasonal trends of CWD. (<b>c</b>) Seasonal trends of SDII. (<b>d</b>) Seasonal trends of RX1day. (e) Seasonal trends of R20mm. (<b>f</b>) Seasonal trends of PRCPTPT. (<b>g</b>) Seasonal trends of R95P. (green: Spring, blue: Summer, yellow: Autumn, black: Winter).</p>
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<p>Cumulative anomaly maps for EPIs. (<b>a</b>) Cumulative mutation map of CDD. (<b>b</b>) Cumulative mutation map of CWD. (<b>c</b>) Cumulative mutation map of SDII. (<b>d</b>) Cumulative mutation map of RX1day. (<b>e</b>) Cumulative mutation map of R20mm. (<b>f</b>) Cumulative mutation map of PRCPTOT. (<b>g</b>) Cumulative mutation map of R95P.</p>
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<p>Correlation between EPIs and PRCPTOT.</p>
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<p>Pearson correlation coefficients of geographic factors on EPIs.</p>
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<p>Distribution by altitude and fitting curve.</p>
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<p>Correlation of EPIs with atmospheric circulation patterns, 1970–2022.</p>
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<p>The periodic relationships between AMO and Niño 3.4 and precipitation by using XWT. (<b>a</b>–<b>f</b>) are the results of XWT between CWD, SDII, RX1day, R20mm, PRCPTOT, and R95P and AMO respectively. (<b>g</b>–<b>l</b>) are the results of XWT between CWD, SDII, RX1day, R20mm, PRCPTOT, and R95P and Niño 3.4 respectively.</p>
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<p>The periodic relationships between AMO and Niño 3.4 and precipitation by using WTC. (<b>a</b>–<b>f</b>) are the results of WTC between CWD, SDII, RX1day, R20mm, PRCPTOT, and R95P and AMO respectively. (<b>g</b>–<b>l</b>) are the results of WTC between CWD, SDII, RX1day, R20mm, PRCPTOT, and R95P and Niño 3.4 respectively.</p>
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<p>(<b>a</b>) Changes in mean annual temperature, 1970–2022. (<b>b</b>) Changes in mean annual total precipitation, 1970–2022.</p>
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<p>Complete site map. (<b>a</b>) Spatial distribution of CDD. (<b>b</b>) Spatial distribution of CWD. (<b>c</b>) Spatial distribution of SDII. (<b>d</b>) Spatial distribution of RX1day. (<b>e</b>) Spatial distribution of RX5day. (<b>f</b>) Spatial distribution of R5mm. (<b>g</b>) Spatial distribution of R10mm. (<b>h</b>) Spatial distribution of R20mm. (<b>i</b>) Spatial distribution of PRCPTOT. (<b>j</b>) Spatial distribution of R95P. (k) Spatial distribution of R99P. (<b>l</b>) Average annual precipitation distribution.</p>
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<p>Complete cumulative mutation map of EPIs. (<b>a</b>) Cumulative mutation map of CDD. (<b>b</b>) Cumulative mutation map of CWD. (<b>c</b>) Cumulative mutation map of SDII. (<b>d</b>) Cumulative mutation map of RX1day. (<b>e</b>) Cumulative mutation map of RX5day. (<b>f</b>) Cumulative mutation map of R5mm. (<b>g</b>) Cumulative mutation map of R10mm. (<b>h</b>) Cumulative mutation map of R20mm. (<b>i</b>) Cumulative mutation map of PRCPTOT. (<b>j</b>) Cumulative mutation map of R95P. (k) Cumulative mutation map of R99P.</p>
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