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18 pages, 4115 KiB  
Article
Novel Co-Cultivation Bioprocess with Immobilized Paenibacillus polymyxa and Scenedesmus obliquus for Lipid and Butanediol Production
by Jnanada Shrikant Joshi, Laura Fladung, Olaf Kruse and Anant Patel
Microorganisms 2025, 13(3), 606; https://doi.org/10.3390/microorganisms13030606 - 5 Mar 2025
Viewed by 419
Abstract
Microalgal biotechnology is gaining attention due to its potential to produce pigments, lipids, biofuels, and value-added products. However, challenges persist in terms of the economic viability of microalgal lipid production in photobioreactors due to slow growth rates, expensive media, complex downstream processing, limited [...] Read more.
Microalgal biotechnology is gaining attention due to its potential to produce pigments, lipids, biofuels, and value-added products. However, challenges persist in terms of the economic viability of microalgal lipid production in photobioreactors due to slow growth rates, expensive media, complex downstream processing, limited product yields, and contamination risks. Recent studies suggest that co-cultivating microalgae with bacteria can enhance the profitability of microalgal bioprocesses. Immobilizing bacteria offers advantages such as protection against shear forces, the prevention of overgrowth, and continuous product secretion. Previous work has shown that biopolymeric immobilization of Paenibacillus polymyxa enhances 2,3-butanediol production. In this study, a novel co-fermentation process was developed by exploiting the chemical crosstalk between a freshwater microalga Scenedesmus obliquus, also known as Tetradesmus obliquus, and an immobilized plant-growth-promoting bacterium, Paenibacillus polymyxa. This co-cultivation resulted in increased metabolite production, with a 1.5-fold increase in the bacterial 2,3-butanediol concentration and a 3-fold increase in the microalgal growth rates compared to these values in free-cell co-cultivation. Moreover, the co-culture with the immobilized bacterium exhibited a 5-fold increase in the photosynthetic pigments and a 3-fold increase in the microalgal lipid concentration compared to these values in free-cell co-cultivation. A fixed bed photobioreactor was further constructed, and the co-cultivation bioprocess was implemented to improve the bacterial 2,3-butanediol and microalgal lipid production. In conclusion, this study provides conclusive evidence for the potential of co-cultivation and biopolymeric immobilization techniques to enhance 2,3-butanediol and lipid production. Full article
(This article belongs to the Special Issue The Application Potential of Microalgae in Green Biotechnology)
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<p>Setup of the utilized self-constructed fixed bed photobioreactor (<b>A</b>) and a photo of the utilized self-constructed tubular fixed bed photobioreactor with the main light source of the tubular photobioreactor removed to visualize the medium (<b>B</b>). Fluidized bed photobioreactor can improve the product yields with proper mixing due to gas sparging and improved light transmission (<b>C</b>).</p>
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<p>Maximum specific growth rates (μmax) determined in the cultivation of axenic microalgae in the PS medium with the addition of empty chitosan-coated carrageenan beads and the co-cultivation with immobilized bacteria. <span class="html-italic">n</span> = 5; mean ± SD. Different letters a, b, and c indicate a significant difference according to the one-way ANOVA F<sub>2,14</sub> = 1501.51; <span class="html-italic">p</span> &lt; 0.001 with Bonferroni’s post hoc test at <span class="html-italic">p</span> &lt; 0.05. <span class="html-italic">n</span> = 5; mean <math display="inline"><semantics> <mrow> <mo>±</mo> </mrow> </semantics></math> SD; one-way ANOVA with Bonferroni’s post hoc test, <span class="html-italic">p</span> &lt; 0.05 (<b>A</b>). Total chlorophyll contents determined in the cultivation of axenic microalgae in the PS medium with the addition of empty chitosan-coated carrageenan beads and the co-cultivation with immobilized bacteria. <span class="html-italic">n</span> = 5; mean ± SD. Different letters a, b, and c indicate a significant difference according to the one-way ANOVA F<sub>2,14</sub> = 2894.11; <span class="html-italic">p</span> &lt; 0.001 with Bonferroni’s post hoc test at <span class="html-italic">p</span> &lt; 0.05 (<b>B</b>).</p>
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<p>Determined 2,3-BDL concentrations of co-cultivation of free cells and chitosan-coated calcium alginate bead- and chitosan-coated carrageenan bead-immobilized bacteria. <span class="html-italic">n</span> = 5; mean ± SD. Different letters a and b indicate a significant difference according to one-way ANOVA F<sub>2,24</sub> = 166.58; <span class="html-italic">p</span> &lt; 0.001 with Bonferroni’s post hoc test at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Co-cultivation of axenic <span class="html-italic">S. obliquus</span> with <span class="html-italic">P. polymyxa</span> immobilized in chitosan-coated carrageenan beads in PS medium using a self-constructed tubular fixed bed photobioreactor over 366 h; photos with the main light source of the tubular photobioreactor removed to visualize the medium.</p>
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<p>Samples of <span class="html-italic">S. obliquus</span> in co-culture with chitosan-coated carrageenan <span class="html-italic">P. polymyxa</span> beads in PS medium in a photobioreactor for 0 h to 336 h.</p>
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14 pages, 2439 KiB  
Article
A Context-Preserving Tokenization Mismatch Resolution Method for Korean Word Sense Disambiguation Based on the Sejong Corpus and BERT
by Hanjo Jeong
Mathematics 2025, 13(5), 864; https://doi.org/10.3390/math13050864 - 5 Mar 2025
Viewed by 116
Abstract
The disambiguation of word senses (Word Sense Disambiguation, WSD) plays a crucial role in various natural language processing (NLP) tasks, such as machine translation, sentiment analysis, and information retrieval. Due to the complex morphological structure and polysemy of the Korean language, the meaning [...] Read more.
The disambiguation of word senses (Word Sense Disambiguation, WSD) plays a crucial role in various natural language processing (NLP) tasks, such as machine translation, sentiment analysis, and information retrieval. Due to the complex morphological structure and polysemy of the Korean language, the meaning of words can change depending on the context, making the WSD problem challenging. Since a single word can have multiple meanings, accurately distinguishing between them is essential for improving the performance of NLP models. Recently, large-scale pre-trained models like BERT and GPT, based on transfer learning, have shown promising results in addressing this issue. However, for languages with complex morphological structures, like Korean, the tokenization mismatch between pre-trained models and fine-tuning data prevents the rich contextual and lexical information learned by the pre-trained models from being fully utilized in downstream tasks. This paper proposes a novel method to address the tokenization mismatch issue during the fine-tuning of Korean WSD, leveraging BERT-based pre-trained models and the Sejong corpus, which has been annotated by language experts. Experimental results using various BERT-based pre-trained models and datasets from the Sejong corpus demonstrate that the proposed method improves performance by approximately 3–5% compared to existing approaches. Full article
(This article belongs to the Section E1: Mathematics and Computer Science)
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<p>BERT-based input and output embedding representations for the proposed method.</p>
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<p>Overall architecture of the BERT-based proposed model.</p>
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<p>ROC analysis results for the top 20 most frequent sense ID classes using the proposed model with word tokens only.</p>
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<p>ROC analysis results for the top 20 most frequent sense ID classes using the proposed model with both word and POS tokens.</p>
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15 pages, 968 KiB  
Article
A Radical-Based Token Representation Method for Enhancing Chinese Pre-Trained Language Models
by Honglun Qin, Meiwen Li, Lin Wang, Youming Ge, Junlong Zhu and Ruijuan Zheng
Electronics 2025, 14(5), 1031; https://doi.org/10.3390/electronics14051031 - 5 Mar 2025
Viewed by 208
Abstract
In the domain of natural language processing (NLP), a primary challenge pertains to the process of Chinese tokenization, which remains challenging due to the lack of explicit word boundaries in written Chinese. The existing tokenization methods often treat each Chinese character as an [...] Read more.
In the domain of natural language processing (NLP), a primary challenge pertains to the process of Chinese tokenization, which remains challenging due to the lack of explicit word boundaries in written Chinese. The existing tokenization methods often treat each Chinese character as an indivisible unit, neglecting the finer semantic features embedded in the characters, such as radicals. To tackle this issue, we propose a novel token representation method that integrates radical-based features into the process. The proposed method extends the vocabulary to include both radicals and original character tokens, enabling a more granular understanding of Chinese text. We also conduct experiments on seven datasets covering multiple Chinese natural language processing tasks. The results show that our method significantly improves model performance on downstream tasks. Specifically, the accuracy of BERT on the BQ Croups dataset was enhanced to 86.95%, showing an improvement of 1.65% over the baseline. Additionally, the BERT-wwm performance demonstrated a 1.28% enhancement, suggesting that the incorporation of fine-grained radical features offers a more efficacious solution for Chinese tokenization and paves the way for future research in Chinese text processing. Full article
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<p>Radical extraction example: extracting the “鬼” radical from the characters “魑魅魍魉”.</p>
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<p>The overall framework of our proposed method, which integrates radical embeddings into pre-trained models to optimize Chinese word segmentation. The framework includes dynamic radical extraction, radical vocabulary construction, and weighted fusion of radical embeddings with token embeddings. By incorporating fine-grained radical features, this approach enhances the performance of downstream tasks while preserving computational efficiency by avoiding model re-training.</p>
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<p>The model architecture, where token embeddings and radical embeddings are combined via a weighted fusion mechanism to enhance downstream task performance.</p>
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<p>Performance comparison for natural language inference across different datasets.</p>
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12 pages, 753 KiB  
Review
GRK2 and Mitochondrial Dynamics in Cardiovascular Health and Disease
by Cristina Gatto, Maria Rosaria Rusciano, Valeria Visco and Michele Ciccarelli
Int. J. Mol. Sci. 2025, 26(5), 2299; https://doi.org/10.3390/ijms26052299 - 5 Mar 2025
Viewed by 59
Abstract
G protein-coupled receptors (GPCRs) represent a family of membrane proteins that regulate several cellular processes. Among the GPCRs, G protein-coupled receptor kinases (GRKs) regulate downstream signaling pathways and receptor desensitization. GRK2 has gained significant interest due to its cardiovascular physiology and pathological involvement. [...] Read more.
G protein-coupled receptors (GPCRs) represent a family of membrane proteins that regulate several cellular processes. Among the GPCRs, G protein-coupled receptor kinases (GRKs) regulate downstream signaling pathways and receptor desensitization. GRK2 has gained significant interest due to its cardiovascular physiology and pathological involvement. GRK2’s presence in cardiac tissue and its influence on cardiac function, β-adrenergic signaling, and myocardial remodeling underlies its involvement in cardiovascular diseases such as heart failure and ischemia. GRK2’s canonical role is receptor desensitization, but emerging evidence suggests its involvement in mitochondrial dynamics and bioenergetics, influencing processes such as oxidative phosphorylation, reactive oxygen species production, and apoptosis. Moreover, GRK2’s localization within mitochondria suggests a direct role in regulating mitochondrial health and function. Notably, while GRK2 inhibition seems to be a therapeutic approach to heart failure, its precise role in mitochondrial dynamics and pathology needs further investigation. This review explores the complex relationship between mitochondrial function and GRK2 and clarifies the implications for cardiovascular health. Cardiovascular medicine might greatly benefit from future studies that focus on understanding the processes behind GRK2–mitochondrial crosstalk to develop personalized therapies Full article
(This article belongs to the Special Issue Heart Failure: From Molecular Basis to Therapeutic Strategies)
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Graphical abstract

Graphical abstract
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<p>The role of GRK2 in cardiovascular disease. βAR—β-adrenergic receptor; CA—catecholamines; AC—adenylate cyclase; PKA—protein kinase A.</p>
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17 pages, 975 KiB  
Review
Proteomics of Extracellular Vesicles: Recent Updates, Challenges and Limitations
by Mohini Singh, Prashant Kumar Tiwari, Vivek Kashyap and Sanjay Kumar
Proteomes 2025, 13(1), 12; https://doi.org/10.3390/proteomes13010012 - 4 Mar 2025
Viewed by 200
Abstract
Extracellular vesicles (EVs) are lipid-bound vesicles secreted by cells, including exosomes, microvesicles, and apoptotic bodies. Proteomic analyses of EVs, particularly in relation to cancer, reveal specific biomarkers crucial for diagnosis and therapy. However, isolation techniques such as ultracentrifugation, size-exclusion chromatography, and ultrafiltration face [...] Read more.
Extracellular vesicles (EVs) are lipid-bound vesicles secreted by cells, including exosomes, microvesicles, and apoptotic bodies. Proteomic analyses of EVs, particularly in relation to cancer, reveal specific biomarkers crucial for diagnosis and therapy. However, isolation techniques such as ultracentrifugation, size-exclusion chromatography, and ultrafiltration face challenges regarding purity, contamination, and yield. Contamination from other proteins complicates downstream processing, leading to difficulties in identifying biomarkers and interpreting results. Future research will focus on refining EV characterization for diagnostic and therapeutic applications, improving proteomics tools for greater accuracy, and exploring the use of EVs in drug delivery and regenerative medicine. In this review, we provide a bird’s eye view of various challenges, starting with EV isolation methods, yield, purity, and limitations in the proteome analysis of EVs for identifying protein targets. Full article
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<p>Exosome biogenesis involves multiple stages. Exosomes originate as small vesicles within larger structures known as multivesicular bodies (MVBs). This formation typically involves the ESCRT complex. MVBs then migrate either to the plasma membrane or to lysosomes. At the plasma membrane, MVBs fuse and release exosomes with the assistance of the SNARE complex. In contrast, microvesicles form by directly budding out from the plasma membrane. Apoptotic bodies, produced only by dying cells, break off from the cell surface. These extracellular vesicles are characterized by a lipid bilayer and contain various components such as DNA, RNA, proteins, receptors, lipids, and metabolites.</p>
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27 pages, 2047 KiB  
Review
Innovative Processing and Industrial Applications of Seaweed
by Abhishek Sharma, Shrestha Dubey, Kavita Singh, Rochak Mittal, Patrick Quille and Gaurav Rajauria
Phycology 2025, 5(1), 10; https://doi.org/10.3390/phycology5010010 - 3 Mar 2025
Viewed by 275
Abstract
Seaweed is a resilient macrophytic plant thriving in intertidal zones. These are rapidly gaining attention due to their autotrophic nourishment, rapid growth, and minimal land requirement for cultivation. Seaweed is used in various food and non-food sectors, thus possessing immense potential as a [...] Read more.
Seaweed is a resilient macrophytic plant thriving in intertidal zones. These are rapidly gaining attention due to their autotrophic nourishment, rapid growth, and minimal land requirement for cultivation. Seaweed is used in various food and non-food sectors, thus possessing immense potential as a valuable bioresource with high commercial value. However, utilizing seaweed as a bioresource comes with various challenges at processing levels, particularly at cost-effective downstream processing. Hence, this review highlights the advancement in seaweed biomass processing together with its application in food, nutraceuticals, pharmaceuticals, cosmetics, and non-food sectors. Additionally, the advancements in seaweed cultivation and the applications of seaweed in agriculture as a biostimulant, biofuel production, and packaging material are also reviewed. Finally, this review addresses the need for technology intensification, public awareness, and financial investment to enhance the commercialization and integration of seaweed-based products into the bioeconomy. The potential of seaweed to contribute to climate change mitigation and the circular economy is underscored, calling for further research and development to optimize its multifaceted applications. Full article
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<p>Different applications of seaweed.</p>
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<p>Strategies for enhancement of seaweed cultivation.</p>
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<p>Application of Bioengineering in Seaweed Cultivation.</p>
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<p>Commercially important biomolecules present in green, brown, and red seaweed.</p>
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18 pages, 2041 KiB  
Review
Insights on the Role of Sialic Acids in Acute Lymphoblastic Leukemia in Children
by Kimberley Rinai Radu and Kwang-Hyun Baek
Int. J. Mol. Sci. 2025, 26(5), 2233; https://doi.org/10.3390/ijms26052233 - 1 Mar 2025
Viewed by 320
Abstract
Sialic acids serve as crucial terminal sugars on glycoproteins or glycolipids present on cell surfaces. These sugars are involved in diverse physiological and pathological processes through their interactions with carbohydrate-binding proteins, facilitating cell–cell communication and influencing the outcomes of bacterial and viral infections. [...] Read more.
Sialic acids serve as crucial terminal sugars on glycoproteins or glycolipids present on cell surfaces. These sugars are involved in diverse physiological and pathological processes through their interactions with carbohydrate-binding proteins, facilitating cell–cell communication and influencing the outcomes of bacterial and viral infections. The role of hypersialylation in tumor growth and metastasis has been widely studied. Recent research has highlighted the significance of aberrant sialylation in enabling tumor cells to escape immune surveillance and sustain their malignant behavior. Acute lymphoblastic leukemia (ALL) is a heterogenous hematological malignancy that primarily affects children and is the second leading cause of mortality among individuals aged 1 to 14. ALL is characterized by the uncontrolled proliferation of immature lymphoid cells in the bone marrow, peripheral blood, and various organs. Sialic acid-binding immunoglobulin-like lectins (Siglecs) are cell surface proteins that can bind to sialic acids. Activation of Siglecs triggers downstream reactions, including induction of cell apoptosis. Siglec-7 and Siglec-9 have been reported to promote cancer progression by driving macrophage polarization, and their expressions on natural killer cells can inhibit tumor cell death. This comprehensive review aims to explore the sialylation mechanisms and their effects on ALL in children. Understanding the complex interplay between sialylation and ALL holds great potential for developing novel diagnostic tools and therapeutic interventions in managing this pediatric malignancy. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
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<p>The basic structures of sialic acids. (<b>a</b>) N-acetylneuraminic acid (Neu5Ac), (<b>b</b>) N-glycolylneuraminic acid (Neu5Gc), and (<b>c</b>) 3-deoxy-d-glycero-d-galacto-2-nonulosonic acid (KDN). (Red indicates -O bonds, while blue indicates -NH bonds).</p>
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<p>Schematic representation of the sialic acid biosynthesis pathway in mammalian cells.</p>
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<p>Depiction of hypersialylation from a regular cell growing beyond its regular cell cycle into cancerous cells of several heterogeneity that enables them to increase chances of survival. Created with <a href="http://BioRender.com" target="_blank">BioRender.com</a>.</p>
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<p>Interaction between immune cells (T- and B-cells) and cancer cells within the immunosuppressive tumor microenvironment (TME), highlighting the attachment of Siglecs to signals from cancel cells and MHC antigens as recognition sites. Created with <a href="http://BioRender.com" target="_blank">BioRender.com</a>.</p>
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<p>Recent developments on targeting Siglecs as tumor-associated markers.</p>
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23 pages, 7091 KiB  
Article
Research on Control Strategy of Stainless Steel Diamond Plate Pattern Height Rolling Based on Local Constraints
by Zezhou Xin, Siyuan Qiu, Chunliu Wang, Huadong Qiu, Chuanmeng Sun and Zhibo Wu
Materials 2025, 18(5), 1116; https://doi.org/10.3390/ma18051116 - 1 Mar 2025
Viewed by 214
Abstract
The rolling system for stainless steel, particularly in the production of diamond plates, represents a complex industrial control scenario. The process requires precise load distribution to effectively manage pattern height, due to the high strength, hardness, and required dimensional accuracy of the material. [...] Read more.
The rolling system for stainless steel, particularly in the production of diamond plates, represents a complex industrial control scenario. The process requires precise load distribution to effectively manage pattern height, due to the high strength, hardness, and required dimensional accuracy of the material. This paper addresses the limitations of offline methods, which include heavy reliance on initial conditions, intricate parameter settings, susceptibility to local optima, and suboptimal performance under stringent constraints. A Multi-Objective Adaptive Rolling Iteration method that incorporates local constraints (MOARI-LC) is proposed. The MOARI-LC method simplifies the complex multi-dimensional nonlinear constrained optimization problem of load distribution, into a one-dimensional multi-stage optimization problem without explicit constraints. This simplification is achieved through a single variable cycle iteration involving reduction rate and rolling equipment selection. The rolling results of HBD-SUS304 show that the pattern height to thickness ratio obtained by MOARI-LC is 0.20–0.22, which is within a specific range of dimensional accuracy. It outperforms the other two existing methods, FCRA-NC and DCRA-GC, with results of 0.19~0.24 and 0.15~0.25, respectively. MOARI-LC has increased the qualification rate of test products by more than 25%, and it has also been applied to the other six industrial production experiments. The results show that MOARI-LC can control the absolute value of the rolling force prediction error of the downstream stands of the hot strip finishing rolls within 5%, and the absolute value of the finished stand within 3%. These results validate the scalability and accuracy of MOARI-LC. Full article
(This article belongs to the Special Issue High-Performance Alloys and Steels)
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<p>Layout of hot strip rolling process equipment.</p>
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<p>Height signal of the stainless steel diamond plate pattern.</p>
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<p>Strip warping wave shape.</p>
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<p>The diamond stand selection.</p>
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<p>MOARI method flow chart.</p>
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<p>Iterative optimization of each stand reduction rate.</p>
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<p>Predicted rolling force, actual rolling force, and percentage error of each stand.</p>
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<p>The spatial distribution and correlation of reduction rate, rolling force, and exit thickness.</p>
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<p>Load distribution index synthesis and correlation.</p>
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<p>Austenitic stainless steel diamond plate HBD-SUS304 product appearance.</p>
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<p>Statistics and variance distribution of the pattern height to thickness ratio data obtained by the three methods.</p>
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<p>Data distribution of the pattern height to thickness ratio obtained by three methods.</p>
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<p>Distribution of rolling force prediction errors for each stand under 6 different conditions.</p>
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<p>Comparison of prediction errors of rolling force between upstream and downstream stands under 6 different conditions.</p>
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18 pages, 4118 KiB  
Article
A Dynamic Flowmeter-Monitoring Path-Partitioning Strategy for Real-Time Demand Estimation in Water Distribution Systems
by Xiujuan Li, Yisu Zhou, Chenxi Hu, Yong Zhang, Jiangxia Wang and Jingqing Liu
Water 2025, 17(5), 703; https://doi.org/10.3390/w17050703 - 28 Feb 2025
Viewed by 144
Abstract
The hydraulic model serves as an effective tool for operational simulation, dispatch decision-making, and engineering planning in water distribution systems (WDSs). The increasing complexity of large-scale networks and the growing number of monitoring devices present both challenges and opportunities for the online calibration [...] Read more.
The hydraulic model serves as an effective tool for operational simulation, dispatch decision-making, and engineering planning in water distribution systems (WDSs). The increasing complexity of large-scale networks and the growing number of monitoring devices present both challenges and opportunities for the online calibration of WDSs in terms of efficiency and accuracy. To address these issues, this paper introduces a novel strategy, Flowmeter-Monitoring Path-Partitioning (FMPP), for nodal demand calibration of hydraulic models. FMPP partitions nodes based on the monitoring paths of flowmeters, which include all downstream nodes of a given flowmeter. Then, a system of equations is formulated from the mass and energy conservation, and an iterative optimization process is employed to calibrate the nodal demands. This method enables the partitioning of nodes to achieve the optimal granularity, enabling each flowmeter to be calibrated individually and also reducing the calibration parameters through node grouping. The performance of the proposed method has been validated through two comprehensive case studies, demonstrating its superiority to conventional calibration techniques in terms of accuracy, computational efficiency, and practical applicability in real-time nodal demand estimation. This approach meets the requirements for the real-time calibration of nodal demand in complex large-scale pipe networks. Full article
(This article belongs to the Section Urban Water Management)
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<p>Flowchart summarizing steps of the proposed method.</p>
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<p>Dynamic pre-allocation of nodal demand by (<b>a</b>) using pipes that upload real-time flow data to segment the undirected graph G abstracted from pipe network, (<b>b</b>) obtaining the set of isolated sub-districts by computing the connected components of <math display="inline"><semantics> <mrow> <mi>G</mi> </mrow> </semantics></math>, (<b>d</b>) computing the water demand for each isolated sub-district by real-time observed data of inflow and outflow pipes, and (<b>c</b>) proportionally updating the nodal demand based on the initial static nodal demand.</p>
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<p>Diagram of flowmeter monitoring path. (<b>a</b>) Simulated flow directions within an isolated sub-district using WNTR. (<b>b</b>) Nodes are partitioned based on the monitoring paths of flowmeters. Nodes with the same color indicate that they are downstream of the same flowmeter combination.</p>
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<p>Flow conservation of zones. Solid lines represent pipes with flowmeters, and dashed lines represent those without.</p>
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<p>Calibrate the flow of boundary pipes without flowmeters based on pressure sensors by (<b>a</b>) selecting the pressure sensors within the zone and (<b>b</b>) calculating the nodal pressure at the boundary pipe using intra-zone pressure sensors.</p>
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<p>Layout and sensor locations of the two case studies: (<b>a</b>) Case A, (<b>b</b>) Case B.</p>
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<p>The partitioning results of the two case studies: (<b>a</b>) isolated sub-districts for Case A, (<b>b</b>) flowmeter monitoring path partitioning for Case A, (<b>c</b>) isolated sub-districts for Case B, (<b>d</b>) flowmeter monitoring path partitioning for Case B.</p>
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<p>Flow and pressure errors of Case A between real values and calibration results: (<b>a</b>) pipe flow errors of the FMPP method, (<b>b</b>) pipe flow errors of the GA method, (<b>c</b>) junction pressure errors of the FMPP method, (<b>d</b>) junction pressure errors of the GA method.</p>
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<p>Probability density of flow and pressure errors of the Case A: (<b>a</b>) the flow errors, (<b>b</b>) the pressure errors.</p>
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<p>Boxplots of flow errors for Case B obtained by (<b>a</b>) the FMPP method for calibration, (<b>b</b>) the GA method for calibration, (<b>c</b>) the FMPP method for validation, (<b>d</b>) the GA method for validation.</p>
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<p>Boxplots of pressure errors for Case B obtained by (<b>a</b>) the FMPP method for calibration, (<b>b</b>) the GA method for calibration, (<b>c</b>) the FMPP method for validation, (<b>d</b>) the GA method for validation.</p>
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<p>Comparison of errors between actual and calibrated results for Case B, using the FMPP and GA methods with different numbers of flowmeters. (<b>a</b>) MARE of all pipe flows, (<b>b</b>) MAE of all nodal pressures.</p>
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24 pages, 2285 KiB  
Review
The Function of Myostatin in Ameliorating Bone Metabolism Abnormalities in Individuals with Type 2 Diabetes Mellitus by Exercise
by Chenghao Zhong, Xinyu Zeng, Xiaoyan Yi, Yuxin Yang, Jianbo Hu, Rongbin Yin and Xianghe Chen
Curr. Issues Mol. Biol. 2025, 47(3), 158; https://doi.org/10.3390/cimb47030158 - 27 Feb 2025
Viewed by 151
Abstract
Purpose: The molecular mechanisms involved in bone metabolism abnormalities in individuals with type 2 diabetes mellitus (T2DM) are a prominent area of investigation within the life sciences field. Myostatin (MSTN), a member of the TGF-β superfamily, serves as a critical negative regulator of [...] Read more.
Purpose: The molecular mechanisms involved in bone metabolism abnormalities in individuals with type 2 diabetes mellitus (T2DM) are a prominent area of investigation within the life sciences field. Myostatin (MSTN), a member of the TGF-β superfamily, serves as a critical negative regulator of skeletal muscle growth and bone metabolism. Current research on the exercise-mediated regulation of MSTN expression predominantly focuses on its role in skeletal muscle. However, due to the intricate and multifaceted mechanical and biochemical interactions between muscle and bone, the precise mechanisms by which exercise modulates MSTN to enhance bone metabolic disorders in T2DM necessitate additional exploration. The objective of this review is to systematically synthesize and evaluate the role of MSTN in the development of bone metabolism disorders associated with T2DM and elucidate the underlying mechanisms influenced by exercise interventions, aiming to offer novel insights and theoretical recommendations for enhancing bone health through physical activity. Methods: Relevant articles in Chinese and English up to July 2024 were selected using specific search terms and databases (PubMed, CNKI, Web of Science); 147 studies were finally included after evaluation, and the reference lists were checked for other relevant research. Results: Myostatin’s heightened expression in the bone and skeletal muscle of individuals with T2DM can impede various pathways, such as PI3K/AKT/mTOR and Wnt/β-catenin, hindering osteoblast differentiation and bone mineralization. Additionally, it can stimulate osteoclast differentiation and bone resorption capacity by facilitating Smad2-dependent NFATc1 nuclear translocation and PI3K/AKT/AP-1-mediated pro-inflammatory factor expression pathways, thereby contributing to bone metabolism disorders. Physical exercise plays a crucial role in ameliorating bone metabolism abnormalities in individuals with T2DM. Exercise can activate pathways like Wnt/GSK-3β/β-catenin, thereby suppressing myostatin and downstream Smads, CCL20/CCR6, and Nox4 target gene expression, fostering bone formation, inhibiting bone resorption, and enhancing bone metabolism in T2DM. Conclusion: In the context of T2DM, MSTN has been shown to exacerbate bone metabolic disorders by inhibiting the differentiation of osteoblasts and the process of bone mineralization while simultaneously promoting the differentiation and activity of osteoclasts. Exercise interventions have demonstrated efficacy in downregulating MSTN expression, disrupting its downstream signaling pathways, and enhancing bone metabolism. Full article
(This article belongs to the Section Biochemistry, Molecular and Cellular Biology)
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<p>The PRISMA 2020 flow diagram was used for the identification of the studies included in this review. No automation tools were used for the screening process.</p>
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<p>The function of MSTN in bone metabolism related to health and T2DM. Generated with Adobe Illustrator 2023 v27.0.</p>
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<p>Mechanism of MSTN in bone metabolism disorder of T2DM. IGF-1—insulin-like growth factor 1; PI3k—Phosphoinositide-3 kinase; AKT—protein kinase B; mTOR—Mammalian target of rapamycin; NOX4—Nicotinamide adenine dinucleotide phosphate oxidase 4; SOST—sclerostin; DKK1—Dickkopf-1; GSK3β—Glycogen synthase kinase 3 beta; ROS—reactive oxygen species; NF-κB—nuclear factor-kappa B; SOCE—Store-operated Ca<sup>2+</sup> entry; MAPK—Mitogen-activated protein kinase; FGF23—fibroblast growth factor 23; ERK1/2—extracellular regulated protein kinases 1/2; TNAP—tissue-nonspecific alkaline phosphatase; PPi—Pyrophosphoric acid; Pi—inorganic phosphate; ALK4—Activin receptor-like kinases 4; ALK5—Activin receptor-like kinases 5; ACTRIIB—Activin receptor IIB; Runx2—Runt-related transcription factor 2; OSF-2—osteoblast-specific factor 2; BMP-2—bone morphogenetic protein-2; MEK1—Mitogen-activated protein kinase 1; IL-6—interleukin-6; AP-1—activator protein 1; TNF-α—tumor necrosis factor-alpha; JNK—cJun N-terminal kinase; NFATc1—nuclear factor of activated T cells 1; Ccdc50—Coiled-coil domain-containing protein 50; RANKL—receptor activator for nuclear factor-κB ligand. MSTN inhibits OB differentiation and bone mineralization through multiple signal pathways, promoting OC differentiation and bone resorption, leading to disturbed bone metabolism in T2DM. Generated with Adobe Illustrator 2023 v27.0.</p>
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<p>Mechanisms of MSTN in the improvement of T2DM bone metabolism disorders by exercise. MOTS-c—mitochondrial open reading frame of the 12S ribosomal RNA type-c; CK2—casein kinase 2; mTORC2—Mammalian target of rapamycin complex 1; PTEN—phosphatase and tensin homolog; AMPK—AMP-activated protein kinase; PGC-1α—peroxisome proliferator-activated receptor-gamma coactivator-1 alpha; AR—Androgen receptor; C/EBPδ—CCAAT/Enhancer binding protein δ; MMP-2—matrix metalloproteinases 2; TIMP-2—tissue inhibitor of metalloproteinases 2; DCN—Decorin; ROS—reactive oxygen species; TNF-α—tumor necrosis factor-alpha; JNK—cJun N-terminal kinase; AP-1—activator protein 1; IL-6—interleukin-6; IL-1β—interleukin-1 beta; IL-1ra—interleukin-1 receptor antagonist; GSK3β—Glycogen synthase kinase 3 beta; IFN-γ—Interferon-gamma; IκB—inhibitor of κB; NF-κB—nuclear factor-kappa B; ERK—extracellular regulated protein kinases; MAPK—Mitogen-activated protein kinase; NFATc1—nuclear factor of activated T cells; ALK4—Activin receptor-like kinases 4; ALK5—Activin receptor-like kinases 5; ACTRIIB—Activin receptor IIB; RANKL—receptor activator for nuclear factor-κB ligand. Exercise inhibits MSTN expression directly through multiple signal pathways or inhibits MSTN downstream pathways by improving mitochondrial function, inflammatory response, etc., which in turn improves T2DM bone metabolism disorders. Generated with Adobe Illustrator 2023 v27.0.</p>
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<p>Schematic diagram of how exercise improves myostatin-mediated bone metabolism disorders in T2DM. The part above the dashed line indicates how MSTN impairs bone metabolism in the T2DM state, while the part below the dashed line indicates how exercise reverses this process. MOTS-c—mitochondrial open reading frame of the 12S ribosomal RNA type-c; AR—Androgen receptor; DCN—Decorin; IL-6—interleukin-6; GSK3β—Glycogen synthase kinase 3 beta; NFATc1—nuclear factor of activated T cells. Generated with Adobe Illustrator 2023 v27.0. Runner icon by Servier (<a href="https://smart.servier.com/" target="_blank">https://smart.servier.com/</a> (accessed on 15 October 2023)) is licensed under CC-BY 3.0 Unported (<a href="https://creativecommons.org/licenses/by/3.0/" target="_blank">https://creativecommons.org/licenses/by/3.0/</a>).</p>
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22 pages, 2896 KiB  
Article
The Spatial Association Network Structure and Influencing Factors of Pollution Reduction and Carbon Emission Reduction Synergy Efficiency in the Yellow River Basin
by Fan Yang, Jianghong Zhen and Xiaolong Chen
Sustainability 2025, 17(5), 2068; https://doi.org/10.3390/su17052068 - 27 Feb 2025
Viewed by 202
Abstract
As a national strategic development area, the Yellow River Basin (YRB) has seen progress in research on the synergy efficiency of pollution reduction and carbon reduction (SEPCR). However, there are still notable gaps. The theoretical framework for this area is lacking, leading to [...] Read more.
As a national strategic development area, the Yellow River Basin (YRB) has seen progress in research on the synergy efficiency of pollution reduction and carbon reduction (SEPCR). However, there are still notable gaps. The theoretical framework for this area is lacking, leading to diverse and inconsistent conclusions. Additionally, difficulties in data collection and processing, along with incomplete and inconsistent data, negatively affect the accuracy of research findings. Current studies tend to focus on single aspects and lack a comprehensive and systematic analysis of the SEPCR across the entire basin. There is insufficient understanding of key network nodes, connections, and overall structural characteristics. A scientific assessment of its spatial correlation structure has far-reaching implications for the national battle against pollution and the realization of “dual carbon” goals. This study is based on panel data from 75 cities in the YRB from 2006 to 2022. It employs an ultra-efficiency SBM model to measure the SEPCR. Additionally, it utilizes a modified gravity model and social network analysis to explore the spatial network correlation structure in depth. Furthermore, the QAP model is used to clarify the mechanisms of various influencing factors. The research findings indicate that there is an imbalance in the spatial and temporal distribution of the SEPCR in the YRB. Although there is a fluctuating upward trend over time, significant internal spatial disparities exist. While the gaps between regions are gradually narrowing, there are still evident research disparities. Moreover, the spatial connectivity of the SEPCR in the YRB is gradually strengthening, with overall network connectivity also improving, yet there remains a considerable distance from an ideal state. The network density shows a decreasing trend from the downstream to the midstream and then to the upstream regions, with significant differences in spatial network centrality among these areas, particularly pronounced between the midstream and upstream regions. Differences in economic development levels, technological development levels, and industrial structure development levels promote the formation of spatial correlations in SEPCR, while disparities in energy utilization have a suppressive effect. Full article
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<p>Theoretical relationship between urban network structure and collaborative efficiency of pollution and carbon reduction.</p>
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<p>Mean and coefficient of variation of collaborative efficiency for pollution reduction and carbon reduction in the Yellow River Basin.</p>
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<p>Kernel density of collaborative efficiency for pollution reduction and carbon decrease in the Yellow River Basin.</p>
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<p>Spatial pattern of synergistic efficiency of pollution reduction and carbon reduction in the Yellow River Basin.</p>
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<p>The spatial correlation strength of synergistic efficiency in pollution reduction and carbon reduction in the Yellow River Basin.</p>
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<p>Evolution of spatial correlation network assess urban resilience and associated weights. Note: The color shade of the network evolution represents the size of the node in the spatial correlation network, and the darker the color, the larger the degree value.</p>
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<p>Yellow River Basin centrality analysis.</p>
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28 pages, 1086 KiB  
Review
Phytochemicals Targeting BDNF Signaling for Treating Neurological Disorders
by Alka Ashok Singh, Shweta Katiyar and Minseok Song
Brain Sci. 2025, 15(3), 252; https://doi.org/10.3390/brainsci15030252 - 27 Feb 2025
Viewed by 376
Abstract
Neurological disorders are defined by a deterioration or disruption of the nervous system’s structure and function. These diseases, which include multiple sclerosis, Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, and schizophrenia, are caused by intricate pathological processes that include excitotoxicity, neuroinflammation, oxidative stress, genetic [...] Read more.
Neurological disorders are defined by a deterioration or disruption of the nervous system’s structure and function. These diseases, which include multiple sclerosis, Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, and schizophrenia, are caused by intricate pathological processes that include excitotoxicity, neuroinflammation, oxidative stress, genetic mutations, and compromised neurotrophic signaling. Although current pharmaceutical treatments relieve symptoms, their long-term efficacy is limited due to adverse side effects and weak neuroprotective properties. However, when combined with other neuroprotective drugs or adjunct therapy, they may offer additional benefits and improve treatment outcomes. Phytochemicals have emerged as attractive therapeutic agents due to their ability to regulate essential neurotrophic pathways, especially the brain-derived neurotrophic factor (BDNF) signaling cascade. BDNF is an important target for neurodegenerative disease (ND) treatment since it regulates neuronal survival, synaptic plasticity, neurogenesis, and neuroprotection. This review emphasizes the molecular pathways through which various phytochemicals—such as flavonoids, terpenoids, alkaloids, and phenolic compounds—stimulate BDNF expression and modulate its downstream signaling pathways, including GSK-3β, MAPK/ERK, PI3K/Akt/mTOR, CREB, and Wnt/β-catenin. This paper also highlights how phytochemical combinations may interact to enhance BDNF activity, offering new therapeutic options for ND treatment. Despite their potential for neuroprotection, phytochemicals face challenges related to pharmacokinetics, blood–brain barrier (BBB) permeability, and absorption, highlighting the need for further research into combination therapies and improved formulations. Clinical assessment and mechanistic understanding of BDNF-targeted phytotherapy should be the main goals of future studies. The therapeutic efficacy of natural compounds in regulating neurotrophic signaling is highlighted in this review, providing a viable approach to the prevention and treatment of NDs. Full article
(This article belongs to the Section Neuropharmacology and Neuropathology)
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<p>Intron and exon arrangement of the human BDNF gene; alternative polyadenylation sites (PolyA) in the 3′-UTR and internal alternative splice sites in exons 2, 6, and 9 (letters a, b, c, and d) are indicated by the structure and splicing variation in human BDNF (created by using draw.io, a free standalone application version: v26.0.16).</p>
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<p>BDNF/TrkB signaling pathway: three main signaling pathways—MAPK/ERK, PI3K, and PLCγ—are activated when BDNF binds to TrkB-FL in neurons, leading to receptor homodimerization and stimulation and regulating various processes essential to neuronal function. As an alternative, TrkB-T1 also plays a role in regulating the level of BDNF in a given area as well as the shape of individual cells in astrocytes and neurons (created by draw.io, version v26.0.16).</p>
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<p>ProBDNF/p75NTR reverses the effects of BDNF/TrkB signaling, which activates the mTOR pathway to control actin remodeling and spine protein production, hence weakening dendritic spines [<a href="#B115-brainsci-15-00252" class="html-bibr">115</a>]. Copyright: © 2015 by authors Autism Open Access.</p>
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17 pages, 4739 KiB  
Communication
Salt Removal and Peptide Recovery by Crossflow Membrane Filtration of Calanus finmarchicus Hydrolysate
by Lelum Duminda Manamperuma, Janka Dibdiakova, Ocelie Kjønnø, Bjørn Rusten, Josipa Matic, Sileshi Gizachew Wubshet and Eilen Arctander Vik
Purification 2025, 1(1), 2; https://doi.org/10.3390/purification1010002 - 27 Feb 2025
Viewed by 145
Abstract
Crossflow membrane separation was used as a scalable downstream process for the up concentrate of low-molecular-weight peptides and for the removal of salt (NaCl) from Calanus finmarchicus hydrolysate. Membrane processes are increasingly used for various applications in both upstream and downstream processing. The [...] Read more.
Crossflow membrane separation was used as a scalable downstream process for the up concentrate of low-molecular-weight peptides and for the removal of salt (NaCl) from Calanus finmarchicus hydrolysate. Membrane processes are increasingly used for various applications in both upstream and downstream processing. The C. finmarchicus hydrolysate was prepared by enzymatic hydrolysis, followed by crossflow separation. The stepwise membrane nanofiltration of hydrolysate contributed to a progressive reduction in salt in the hydrolysate. The salt concentration in the concentrates decreased by 34%, 53%, and 75%, highlighting the efficiency of the filtration process in separating NaCl from peptides. This gradual reduction in salt concentration suggests that the membrane effectively facilitated NaCl removal while retaining peptides. Briefly, 75% NaCl removal was achieved, with peptide recovery reaching 57% using an NFX membrane in crossflow filtration. Full article
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<p>A schematic diagram of the current study.</p>
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<p>(<b>a</b>) C. finmarchicus zooplankton in the Norwegian Sea; (<b>b</b>) direct harvesting of C. finmarchicus biomass from the sea by the company Zooca<sup>TM</sup>, which has patented the environmental technology for harvesting <span class="html-italic">C. finmarchicus</span> [<a href="#B27-purification-01-00002" class="html-bibr">27</a>]; (<b>c</b>) frozen blocks of <span class="html-italic">C. finmarchicus</span> biomass obtained from Zooca™.</p>
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<p>(<b>a</b>) The test unit used for crossflow filtration in the Aquateam COWI’ laboratory; (<b>b</b>) a scheme of the crossflow filtration experimental setup used to remove salt and recover the C. finmarchicus peptides from hydrolysate.</p>
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<p>The experimental procedure for the three-step crossflow filtration of C. finmarchicus hydrolysate is illustrated in the scheme. The image depicts the filter cake collected after three filtration stages.</p>
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<p>Preliminary test results showing salt removal and measured peptide concentrations with different membranes in the crossflow filtration of <span class="html-italic">C. finmarchicus</span> hydrolysate.</p>
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<p>(<b>a</b>) Peptide concentrations and salt removal of each crossflow filtration step for <span class="html-italic">C. finmarchicus</span> hydrolysate; (<b>b</b>) filtrate sample (Filt 1) after first cycle of crossflow filtration of <span class="html-italic">C. finmarchicus</span> using NFX membrane (<b>left</b>) and raw sample before filtration (<b>right</b>).</p>
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<p>(<b>a</b>) Correlation between peptide concentration and TN of <span class="html-italic">C. finmarchicus</span> hydrolysate after stepwise crossflow filtration; (<b>b</b>) peptide concentration of <span class="html-italic">C. finmarchicus</span> hydrolysate samples after stepwise crossflow filtration.</p>
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<p>(<b>a</b>) Correlation between peptide concentrations and COD of <span class="html-italic">C. finmarchicus</span> hydrolysate after stepwise crossflow filtration; (<b>b</b>) peptide recovery of <span class="html-italic">C. finmarchicus</span> hydrolysate samples after stepwise crossflow filtration.</p>
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<p>(<b>a</b>) Correlation between salinity and Cl content in the raw Calanus f. hydrolysate; (<b>b</b>) correlation between salinity and Na content in the raw Calanus f. hydrolysate.</p>
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<p>Size exclusion chromatograms of the <span class="html-italic">C. finmarchicus</span> hydrolysate processed by crossflow filtration.</p>
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<p>Size exclusion chromatograms of the <span class="html-italic">C. finmarchicus</span> hydrolysate processed by crossflow filtration.</p>
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16 pages, 2917 KiB  
Article
Vicenin-2 Hinders Pro-Inflammatory Response via Targeting the CaMKKβ-AMPK-SIRT1 Axis in Lipopolysaccharide-Stressed THP-1 Cells
by Alessandro Maugeri, Caterina Russo, Giuseppe Tancredi Patanè, Martina Farina, Antonio Rapisarda, Mariorosario Masullo and Michele Navarra
Int. J. Mol. Sci. 2025, 26(5), 2077; https://doi.org/10.3390/ijms26052077 - 27 Feb 2025
Viewed by 206
Abstract
Plant secondary metabolites are known to be valuable agents to hamper inflammation owing to their multiple mechanisms of action. This study investigates the molecular mechanisms underlying the anti-inflammatory effects of vicenin-2 in lipopolysaccharide (LPS)-stressed THP-1 cells. After ascertaining the safety of vicenin-2 in [...] Read more.
Plant secondary metabolites are known to be valuable agents to hamper inflammation owing to their multiple mechanisms of action. This study investigates the molecular mechanisms underlying the anti-inflammatory effects of vicenin-2 in lipopolysaccharide (LPS)-stressed THP-1 cells. After ascertaining the safety of vicenin-2 in our in vitro model, we assessed the anti-inflammatory potential of this flavonoid. Indeed, it counteracted the increase of tumor necrosis factor (TNF)-α, interleukin (IL)-1β, and IL-6 levels, as well as the overexpression of both inducible nitric oxide synthase (iNOS) and cyclooxygenase (COX)-2 caused by the exposure of THP-1 cells to LPS. Acknowledged the role of SIRT1 in the inflammatory process, we focused our attention on this enzyme. Our results showed that LPS dramatically decreased the expression of SIRT1, whereas vicenin-2 restored the levels of this enzyme to those of unexposed cells. These effects were also observed in terms of acetylated p53, a SIRT1 substrate. Notably, we observed that vicenin-2 did not act as a direct activator of SIRT1. Therefore, we investigated the potential involvement of AMP-activated protein kinase (AMPK), an upstream activator of SIRT1. Of note, by blocking AMPK by dorsomorphin, the protective effects of vicenin-2 on SIRT1 expression and activity were lost, suggesting the engagement of this kinase. Consequently, the blockage of AMPK caused a downstream loss of the anti-inflammatory effect of vicenin-2, which was no longer able to decrease both the activation of nuclear factor (NF)-κB and the production of cytokines induced by LPS. Finally, docking simulation suggested that vicenin-2 might act as an activator of Ca2+/calmodulin-dependent protein kinase kinase β (CaMKKβ), one of the regulators of AMPK. Overall, our results suggest that the anti-inflammatory effects of vicenin-2 may be due to the interaction with the CaMKKβ-AMPK-SIRT1 axis. Full article
(This article belongs to the Special Issue Biological Research on Plant Bioactive Compounds)
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<p>Effect of vicenin-2 on THP-1 cell viability. THP-1 cells were exposed to different concentrations of vicenin-2 (from 12.5 to 200 µM) for 24 h. Cell viability was assessed by the MTT test. Results are expressed as percentages of the values detected in untreated cultures containing DMSO as vehicle (CTRL). Data are expressed as means ± SEM of three independent experiments performed in eight replicates (<span class="html-italic">n</span> = 24).</p>
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<p>Effect of vicenin-2 on TNF-α, IL-1β, and IL-6 mRNA expression and release after LPS exposure of THP-1 cells. (<b>A</b>,<b>C</b>,<b>E</b>) Real-time PCR was employed to assess the levels of mRNA, and results are expressed as a relative fold change in exposed cells compared to those of untreated ones after normalization to β-actin. (<b>B</b>,<b>D</b>,<b>F</b>) Evaluation of secreted cytokines was carried out by ELISA in supernatants of THP-1 monocytes treated and untreated with vicenin-2 and LPS. Results are shown as fold change in cytokine release of exposed cells compared to that of untreated ones. (<b>A</b>–<b>F</b>) Data are expressed as the mean ± SEM of three experiments performed separately (<span class="html-italic">n</span> = 9). * <span class="html-italic">p</span> &lt; 0.05, *** <span class="html-italic">p</span> &lt; 0.001, and **** <span class="html-italic">p</span> &lt; 0.0001 vs. LPS-exposed THP-1 cells (blue bar); °°°° <span class="html-italic">p</span> &lt; 0.0001 vs. CTRL cells (light-gray bar).</p>
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<p>Levels of mRNA of iNOS (<b>A</b>) and COX-2 (<b>B</b>) in LPS-exposed THP-1 cells after vicenin-2 pre-treatment. Real-time PCR was employed to assess the levels of mRNA, and results are expressed as a relative fold change in exposed cells compared to those of untreated ones after normalization to β-actin. Data are expressed as the mean ± SEM of three experiments performed separately in triplicate (<span class="html-italic">n</span> = 9). * <span class="html-italic">p</span> &lt; 0.05 and *** <span class="html-italic">p</span> &lt; 0.001 vs. LPS-treated THP-1 cells (blue bar); °°°° <span class="html-italic">p</span> &lt; 0.0001 vs. CTRL cells (light-gray bar).</p>
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<p>Effect of vicenin-2 on SIRT1 mRNA expression (<b>A</b>) and levels of acetylated p53 (<b>B</b>) after LPS exposure of THP-1 cells. Real-time PCR was employed to assess the levels of mRNA, and results are expressed as a relative fold change in exposed cells compared to those of untreated ones after normalization to β-actin (<b>A</b>). Relative protein levels of acetylated p53 were quantified by ELISA (<b>B</b>). Data are expressed as the mean ± SEM of three experiments performed separately in triplicate (<span class="html-italic">n</span> = 9). * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01 and *** <span class="html-italic">p</span> &lt; 0.001 vs. LPS-treated THP-1 cells (blue bar); °°°° <span class="html-italic">p</span> &lt; 0.0001 vs. CTRL cells (light-gray bar).</p>
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<p>Cell-free SIRT1 enzymatic activity assessed after exposure to vicenin-2 (0.1–1000 µM). Control (CTRL, light-gray bar) consisted of the enzyme alone, while vicenin-2 (green bars) was tested at the shown concentrations. Data are expressed as the mean ± SEM of three experiments performed separately in triplicate (<span class="html-italic">n</span> = 9).</p>
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<p>Blockage of the effect of vicenin-2 mediated by dorsomorphin on SIRT1 mRNA expression (<b>A</b>) and levels of acetylated p53 (<b>B</b>) after LPS exposure of THP-1 cells. (<b>A</b>) Real-time PCR was employed to assess the levels of mRNA, and results are expressed as a relative fold change in exposed cells compared to those of untreated ones after normalization to β-actin. (<b>B</b>) Relative protein levels of acetylated p53 were quantified by ELISA. Data are expressed as the mean ± SEM of three experiments performed separately in triplicate (<span class="html-italic">n</span> = 9). ° <span class="html-italic">p</span> &lt; 0.05 and °° <span class="html-italic">p</span> &lt; 0.01 vs. CTRL cells (light-gray bar).</p>
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<p>Role of dorsomorphin in counteracting the anti-inflammatory effect of vicenin-2 in LPS-treated THP-1 cells. (<b>A</b>) Representative immunoblots of the p65 phosphorylation status of three separate experiments are shown. (<b>B</b>) Densitometric analysis of bands from three independent blots is presented. The results are expressed as the ratio of phosphorylated form compared to the total protein (p-p65/p65), and compared to the untreated cells (CTRL, light-gray bar), which are arbitrarily assigned as 1. Results are expressed as fold change compared to the untreated cells. (<b>C</b>) Real-time PCR was employed to assess the levels of mRNA of cytokines, and results are expressed as a relative fold change in exposed cells compared to those of untreated ones after normalization to β-actin. (<b>D</b>) Evaluation of secreted cytokines was carried out by ELISA in supernatants of THP-1 monocytes treated and untreated with vicenin-2 and LPS. Results are shown as fold change in cytokine release of exposed cells compared to that of untreated ones. Data are expressed as the mean ± SEM of three experiments performed separately (for Western blotting, <span class="html-italic">n</span> = 3, while for RT-PCR and cytokine assays, <span class="html-italic">n</span> = 9). **** <span class="html-italic">p</span> &lt; 0.0001 vs. LPS-stressed THP-1 cells (blue bar); °°° <span class="html-italic">p</span> &lt; 0.001 and °°°° <span class="html-italic">p</span> &lt; 0.0001 vs. CTRL cells (light-gray bar).</p>
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<p>Interaction of vicenin-2 in the active site of CaMKKβ determined in silico. (<b>A</b>) Best docked pose of vicenin-2 (in green; PDB code 2ZV2) within the CaMKKβ protein (in cyan surface; PDB code 2ZV2). (<b>B</b>) Interactions of vicenin-2 at selectivity pocket of CaMKKβ. Crucial residues are shown in yellow sticks, while hydrogen bonds are shown as dashed lines.</p>
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<p>Putative mechanism underlying the anti-inflammatory effect of vicenin-2 in LPS-stressed THP-1 cells. Red arrows represent the cascade activated by LPS, while green arrows represent the potential path followed by vicenin-2 to hamper inflammation.</p>
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36 pages, 12339 KiB  
Article
ATIS-Driven 3DCNet: A Novel Three-Stream Hyperspectral Fusion Framework with Knowledge from Downstream Classification Performance
by Quan Zhang, Jian Long, Jun Li, Chunchao Li, Jianxin Si and Yuanxi Peng
Remote Sens. 2025, 17(5), 825; https://doi.org/10.3390/rs17050825 - 26 Feb 2025
Viewed by 213
Abstract
Reconstructing high-resolution hyperspectral images (HR-HSIs) by fusing low-resolution hyperspectral images (LR-HSIs) and high-resolution multispectral images (HR-MSIs) is a significant challenge in image processing. Traditional fusion methods focus on visual and statistical metrics, often neglecting the requirements of downstream tasks. To address this gap, [...] Read more.
Reconstructing high-resolution hyperspectral images (HR-HSIs) by fusing low-resolution hyperspectral images (LR-HSIs) and high-resolution multispectral images (HR-MSIs) is a significant challenge in image processing. Traditional fusion methods focus on visual and statistical metrics, often neglecting the requirements of downstream tasks. To address this gap, we propose a novel three-stream fusion network, 3DCNet, designed to integrate spatial and spectral information from LR-HSIs and HR-MSIs. The framework includes two dedicated branches for extracting spatial and spectral features, alongside a hybrid spatial–spectral branch (HSSI). The spatial block (SpatB) and the spectral block (SpecB) are designed to extract spatial and spectral details. The training process employs the global loss, spatial edge loss, and spectral angle loss for fusion tasks, with an alternating training iteration strategy (ATIS) to enhance downstream classification by iteratively refining the fusion and classification networks. Fusion experiments on seven datasets demonstrate that 3DCNet outperforms existing methods in generating high-quality HR-HSIs. Superior performance in downstream classification tasks on four datasets proves the importance of the ATIS. Ablation studies validate the importance of each module and the ATIS process. The 3DCNet framework not only advances the fusion process by leveraging downstream knowledge but also sets a new benchmark for classification-oriented hyperspectral fusion. Full article
(This article belongs to the Section Remote Sensing Image Processing)
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<p>The fusion of an LR-HSI and an HR-MSI to generate an HR-HSI. Initially, the interactions are captured by the hybrid information capturing operation. Then, three-stream data are passed to train 3DCNet. The alternating training iteration strategy is utilized to complete the downstream high-level classification task using the predicted HR-HSI.</p>
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<p>Three-stream LR-HSI and HR-MSI fusion network. SpatB refers to the spatial block, and SpecB refers to the spectral block.</p>
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<p>Channel attention mechanism utilized in SpecB. Two data streams share parameters in the shared module.</p>
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<p>Fusion results of Pavia University based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (67-29-1 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Fusion results of Pavia Center based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (67-29-1 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Fusion results of Indian Pines based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (29-15-4 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Fusion results of Botswana based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (48-15-4 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Fusion results of Washington DC Mall based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (55-35-11 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Fusion results of Urban based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (26-11-1 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Fusion results of CAVE based on different models, where “GT” refers to the ground truth image. The (<b>first row</b>) shows the RGB images (31-21-11 bands) of the estimated HR-HSIs, and the (<b>second row</b>) shows the difference images between the estimated and reference RGB images, which are processed by a pseudo-color technique.</p>
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<p>Downstream classification maps for the Pavia University dataset using 1% training samples. “GT” refers to the classification ground truth. Overall accuracies are as follows: SSF, 82.30%; ConSSF, 90.18%; TFNet, 72.42%; ResTFNet, 62.01%; MSDCNN, 79.47%; SSRNet, 94.04%; MSST, 91.01%; DCFormer, 91.57%; 3DCNet, 99.00%. The classification colors are explained in DBDA [<a href="#B18-remotesensing-17-00825" class="html-bibr">18</a>].</p>
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<p>Hyperparameter analysis plot on the Urban dataset. Lambda 1, Lambda 2, and Lambda 3 represent the coefficients of the loss functions <math display="inline"><semantics> <msub> <mi mathvariant="script">L</mi> <mrow> <mi>g</mi> <mi>l</mi> <mi>o</mi> <mi>b</mi> <mi>a</mi> <mi>l</mi> </mrow> </msub> </semantics></math>, <math display="inline"><semantics> <msub> <mi mathvariant="script">L</mi> <mrow> <mi>c</mi> <mi>a</mi> <mi>n</mi> <mi>n</mi> <mi>y</mi> </mrow> </msub> </semantics></math>, and <math display="inline"><semantics> <msub> <mi mathvariant="script">L</mi> <mrow> <mi>a</mi> <mi>n</mi> <mi>g</mi> <mi>l</mi> <mi>e</mi> </mrow> </msub> </semantics></math>, respectively. The learning rate represents the initial learning rate.</p>
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