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26 pages, 568 KiB  
Article
Yield Responses to Total Water Input from Irrigation and Rainfall in Six Wheat Cultivars Under Different Climatic Zones in Egypt
by Ahmed Fawzy Elkot, Yasser Shabana, Maha L. Elsayed, Samir Mahmoud Saleh, Maha A. M. Gadallah, Bruce D. L. Fitt, Benjamin Richard and Aiming Qi
Agronomy 2024, 14(12), 3057; https://doi.org/10.3390/agronomy14123057 (registering DOI) - 21 Dec 2024
Abstract
In Egypt, wheat is the most consumed cereal grain, and its availability and affordability are important for social stability. Irrigation plays a vital role in wheat cultivation, despite intense competition for water resources from the River Nile across various societal sectors. To explore [...] Read more.
In Egypt, wheat is the most consumed cereal grain, and its availability and affordability are important for social stability. Irrigation plays a vital role in wheat cultivation, despite intense competition for water resources from the River Nile across various societal sectors. To explore how grain and above-ground biomass yields respond to total seasonal water input from sowing to maturity in six bread wheat cultivars, eight field irrigation experiments were performed at four locations representative of three agro-climatic zones in two consecutive cropping seasons. A three-replicate strip-plot design was used with cultivars nested within the main plots featuring five irrigation treatments, ranging from six to two applications. Overall, irrigation treatment significantly affected nine agronomic traits. Compared with the six irrigation applications treatment (T1), the two irrigation applications treatment (T5) decreased the times to heading and maturity by 6.6 (7.3%) and 8.6 (6.3%) days, respectively. Similarly, T5 reduced the plant height by 14.9 cm (14.3%), flag leaf area by 12.0 cm2 (27.2%), number of spikes per square metre by 77.7 (20.1%), number of kernels per spike by 13.9 (25.2%) and thousand grain weight by 10.0 g (19.6%). T5 also decreased the overall mean grain yield and above-ground biomass yield by 2834.9 (32.0%) and 7910.4 (32.86%) kg/ha, respectively. The grain yield and above-ground biomass production were consistently greater for all six cultivars at Al Mataenah and Sids than at Nubaria and Ismailia in the two cropping seasons. All six cultivars showed significantly greater responses to total seasonal water input for the grain yield and above-ground biomass at Al Mataenah and Ismailia. These results emphasise the necessity for choosing regions with favourable soil and climatic conditions to grow wheat cultivars that respond better to irrigation to enhance the large-scale production of wheat in Egypt. The grain and above-ground biomass yields were mostly linearly and positively associated with the total seasonal water input for all six cultivars at all four locations. This suggests that maintaining the current irrigation schedule of six irrigations is valid and should be practised to maximise productivity, particularly in areas similar to the three representative agro-climatic zones in Egypt. Full article
(This article belongs to the Section Water Use and Irrigation)
45 pages, 6789 KiB  
Article
Biomass Refined: 99% of Organic Carbon in Soils
by Robert J. Blakemore
Biomass 2024, 4(4), 1257-1301; https://doi.org/10.3390/biomass4040070 (registering DOI) - 20 Dec 2024
Abstract
Basic inventory is required for proper understanding and utilization of Earth’s natural resources, especially with increasing soil degradation and species loss. Soil carbon is newly refined at >30,000 Gt C (gigatonnes C), ten times above prior totals. Soil organic carbon (SOC) is up [...] Read more.
Basic inventory is required for proper understanding and utilization of Earth’s natural resources, especially with increasing soil degradation and species loss. Soil carbon is newly refined at >30,000 Gt C (gigatonnes C), ten times above prior totals. Soil organic carbon (SOC) is up to 24,000 Gt C, plus plant stocks at ~2400 Gt C, both above- and below-ground, hold >99% of Earth’s biomass. On a topographic surface area of 25 Gha with mean 21 m depth, Soil has more organic carbon than all trees, seas, fossil fuels, or the Atmosphere combined. Soils are both the greatest biotic carbon store and the most active CO2 source. Values are raised considerably. Disparity is due to lack of full soil depth survey, neglect of terrain, and other omissions. Herein, totals for mineral soils, Permafrost, and Peat (of all forms and ages), are determined to full depth (easily doubling shallow values), then raised for terrain that is ignored in all terrestrial models (doubling most values again), plus SOC in recalcitrant glomalin (+25%) and friable saprock (+26%). Additional factors include soil inorganic carbon (SIC some of biotic origin), aquatic sediments (SeOC), and dissolved fractions (DIC/DOC). Soil biota (e.g., forests, fungi, bacteria, and earthworms) are similarly upgraded. Primary productivity is confirmed at >220 Gt C/yr on land supported by Barrow’s “bounce” flux, C/O isotopes, glomalin, and Rubisco. Priority issues of species extinction, humic topsoil loss, and atmospheric CO2 are remedied by SOC restoration and biomass recycling via (vermi-)compost for 100% organic husbandry under Permaculture principals, based upon the Scientific observation of Nature. Full article
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Figure 1
<p>Atmospheric CO<sub>2</sub> drawdown and O<sub>2</sub> release is from invasion and expansion of land plants. Ref. [<a href="#B7-biomass-04-00070" class="html-bibr">7</a>] extend this with “<span class="html-italic">plant evolution from fresh water to salt water and, at least 500 million years ago, to land</span>”. figure 5 in ref. [<a href="#B8-biomass-04-00070" class="html-bibr">8</a>], who stated “<span class="html-italic">The first land plants buried so much</span> [soil organic] <span class="html-italic">carbon that O<sub>2</sub> accumulated in the atmosphere to roughly present levels</span>”. Most biomass and organic matter are yet found in soils, especially with the most recent ecological studies including terrestrial plants that root or seed as being soil-based thus within a soil inventory.</p>
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<p>Interlinked exchange recycling between endosymbiotic plant Chloroplasts and eukaryote Mitochondria in both autotrophic and heterotrophic plants, fungi, or animals. (Source with permission: Cornell, B: <a href="https://old-ib.bioninja.com.au/higher-level/topic-8-metabolism-cell/untitled-2/photosynthesis-vs-respirati.html" target="_blank">https://old-ib.bioninja.com.au/higher-level/topic-8-metabolism-cell/untitled-2/photosynthesis-vs-respirati.html</a>, accessed 10 May 2024).</p>
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<p>Different models have different CO<sub>2</sub> values, but 550 Ma ago when submerged plants emerged, the (shaded/yellow) estimates range from 20,000 down to 2500 ppm and, as discussed later in Results, this implies &gt;5000–40,000 (median 23,000) Gt C active drawdown via living biomass into soils. (<a href="https://en.wikipedia.org/wiki/File:Phanerozoic_Carbon_Dioxide.png" target="_blank">https://en.wikipedia.org/wiki/File:Phanerozoic_Carbon_Dioxide.png</a> 27 May 2024. CC-BY, accessed on 11 November 2024).</p>
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<p>Countering a common misconception that Ocean supports most biomass and abundance (=productivity and biodiversity) is a recent summary (<a href="https://ourworldindata.org/grapher/biomass-vs-abundance-taxa" target="_blank">https://ourworldindata.org/grapher/biomass-vs-abundance-taxa</a>, accessed on 11 November 2024; CC-BY). Terrestrial soil data presented are wide underestimations lacking both full depth and 3D area; however, those taxa inventoried from registers, such as humans or livestock (possibly birds), are not subject to similar areal gains. Annelid counts are terrestrial earthworms (not marine worms). Cnidarians are mostly marine corals/jellies.</p>
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<p>Major global carbon stores [<a href="#B39-biomass-04-00070" class="html-bibr">39</a>] prior to current Biosphere and Soil carbon revisions. Lithosphere is the rocky mantle with calcitic or dolomitic rocks such as dolomite, limestone, chalk, or marble. Soil organic and inorganic carbon (SOC + SIC) total is ~3000 Gt C, cf., the current study concluding &gt;30,000 Gt C or ×10, approaching Oceans’ dissolved carbon (DOC + DIC) mostly eroded from soils or rocks. Should the 5000–10,000 Gt C in mainly terrestrial fossil fuel stocks (e.g., coal, oil, gas) be added, the Soil tally matches the Oceans’. Note: Pg C = Gt C.</p>
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<p>Figure 6 in ref. [<a href="#B40-biomass-04-00070" class="html-bibr">40</a>] with data taken from [<a href="#B42-biomass-04-00070" class="html-bibr">42</a>]. Conventional summary of carbon stocks and sources as reviewed in the current study. Note: Oceanic dissolved inorganic carbon (DIC) is shown, but neither soil inorganic carbon (SIC + DIC) nor the enormous inorganic carbon in Lithospheric rocks on land (as shown in <a href="#biomass-04-00070-f005" class="html-fig">Figure 5</a>). Another disparity example is in the misplaced priorities of online search of the GCP website with 102 hits for “<span class="html-italic">ocean</span>/<span class="html-italic">marine</span>” but only 26 for “<span class="html-italic">soil</span>”.</p>
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<p>Figure 9.16 in ref. [<a href="#B42-biomass-04-00070" class="html-bibr">42</a>]. Compared to [<a href="#B40-biomass-04-00070" class="html-bibr">40</a>], total soil (2900 Gt C) is less by 200 Gt C (in Permafrost) and NPP is a bit higher at (142/2 =) 71 Gt C/yr. Dissolved organic carbon (DOC) in the Ocean, amounting to about 660–680 Gt C, is spread throughout its depth, and may be relatively ancient and non-reactive [<a href="#B45-biomass-04-00070" class="html-bibr">45</a>]. Ref. [<a href="#B42-biomass-04-00070" class="html-bibr">42</a>] say vertical transfer of DOC creates a downward flux of organic carbon from upper ocean known as “<span class="html-italic">export production</span>” of roughly 11 Gt C that may better reflect Ocean NPP, cf., Land’s 142 Gt C/yr GPP, yet further diminishing marine relevance. An admission is that “<span class="html-italic">Ocean-atmosphere</span>” flux is (passive) “<span class="html-italic">gas exchange</span>”.</p>
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<p>AR5 (figure 10.5 in ref. [<a href="#B41-biomass-04-00070" class="html-bibr">41</a>]) wherein Ocean values are the same as AR6 (IPCC 2024: fig. 5.12) but all terrestrial values differ: Viz., Vegetation 450–650, median 550 vs. 450; Soils 1500–2400, median ~2000 vs. 1700; Permafrost ~1700(!) vs. 1200 Gt C. Fossil fuel reserve values differ too.</p>
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<p>Carbon cycle modified from figure 5 in ref. [<a href="#B87-biomass-04-00070" class="html-bibr">87</a>], updated as discussed.</p>
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<p>(<b>A</b>) Atmospheric CO<sub>2</sub> (log-scale ppm) and (<b>B</b>) O<sub>2</sub> (linear %) correlations modelled through time with black line medians and 95% confidence intervals shaded grey. Five prior extinction events are marked on a pink Era band. Fluctuations in atmospheric CO<sub>2</sub> and O<sub>2</sub> levels are from biotic, climatic, or mass extinction events altering global biomass stocks, then as now [<a href="#B91-biomass-04-00070" class="html-bibr">91</a>].</p>
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<p>From figure 12 in ref. [<a href="#B106-biomass-04-00070" class="html-bibr">106</a>] of SOC with abbreviations of MNC for Microbial Necromass-C; EE- and T-GRSP for easily extractable and total Glomalin-Related Soil Proteins; AMF for Arbuscular mycorrhiza; BRC and FRC for Bacterial and Fungal Residual carbon. GRSP made up 24% or 18% of 20.4 or 25.1 g/kg SOC stocks, respectively. Of note, outside of FRC and GRSP-C, bacterial BRC contributed about 15% of their absolute total SOC carbon across both study habitats. It is likely mistaken to claim increases from Crop to Woodland, as woodlands are cleared for crops.</p>
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<p>Soil carbon to &gt;2.5 m from figure 5 in ref. [<a href="#B50-biomass-04-00070" class="html-bibr">50</a>]. DIC (in blue) is for subsurface soils and, as average soil depth is now &gt;13–21 m, doubling for greater depth seems entirely justified.</p>
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<p>After NOAA (<a href="https://gml.noaa.gov/ccgg/trends/global.html" target="_blank">https://gml.noaa.gov/ccgg/trends/global.html</a>, accessed 11 November 2022) mean CO<sub>2</sub> globally averaged over marine surface sites (i.e., remote from immediate land influences), showing median (black) and seasonal (red) CO<sub>2</sub> fluxes mainly attributed to continual Soil Respiration (brown) or boreal spring/summer land plant Drawdown (green) factors. Note lack of any signal of COVID-19 transport reductions with industry shutdowns from 2020–2022. (Source: [<a href="#B154-biomass-04-00070" class="html-bibr">154</a>], 2022—<a href="https://vermecology.wordpress.com/2020/08/31/barrow/" target="_blank">https://vermecology.wordpress.com/2020/08/31/barrow/</a>, accessed 11 November 2024).</p>
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<p>NOAA’s Barrow site in Alaska is the northernmost monitoring station yielding seasonally fluctuating curves of 60–80 Gt C/yr flux (blue), what I call the “<span class="html-italic">Barrow bounce</span>”, being much higher than fossil fuel emissions and far in excess of any expensive Biomass Energy or Carbon Capture &amp; Storage (BECCS/CCS) schemes. Revised terrestrial NPP (green) vs. soil respiration SR (brown) fluxes just about balance out, more or less; being much greater than the prior guesstimates (black).</p>
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33 pages, 6727 KiB  
Article
Assessment of the Impact of Coastal Wetland Saltmarsh Vegetation Types on Aboveground Biomass Inversion
by Nan Wu, Chao Zhang, Wei Zhuo, Runhe Shi, Fengquan Zhu and Shichang Liu
Remote Sens. 2024, 16(24), 4762; https://doi.org/10.3390/rs16244762 (registering DOI) - 20 Dec 2024
Abstract
Coastal wetlands play an important carbon sequestration role in China's "carbon peaking" and "carbon neutrality" goals. Monitoring aboveground biomass (AGB) is crucial for wetland management. Satellite remote sensing enables efficient retrieval of AGB. However, a variety of statistical models can be used for [...] Read more.
Coastal wetlands play an important carbon sequestration role in China's "carbon peaking" and "carbon neutrality" goals. Monitoring aboveground biomass (AGB) is crucial for wetland management. Satellite remote sensing enables efficient retrieval of AGB. However, a variety of statistical models can be used for biomass inversion, depending on factors such as the vegetation type and inversion method. In this study, Landsat 8 Operational Land Imager (OLI) images were preprocessed in the study area through radiation calibration and atmospheric correction for modeling. In terms of model selection, 13 different models, including the univariate regression model, multiple regression model, and machine learning regression model, were compared in terms of their accuracy in estimating the biomass of various wetland vegetation types under their respective optimal parameters. The findings revealed that: (1) the regression models varied across vegetation types, with the accuracy of the biomass estimates decreasing in the order of Scirpus spp. > Spartina alterniflora > Phragmites australis; (2) overall modeling, without distinguishing vegetation types, addressed the challenges of limited samples availability and sampling difficulty. Among them, the random forest regression model outperformed the others in estimating wet and dry AGB with R2 values of 0.806 and 0.839, respectively. (3) Comparatively, individual modeling of vegetation types can better reflect the biomass of each wetland vegetation type, especially the dry AGB of Scirpus spp., whose R2 and RMSE values increased by 0.248 and 11.470 g/m2, respectively. This study evaluates the impact of coastal saltmarsh vegetation types on biomass estimation, providing insights into biomass dynamics and valuable support for wetland conservation and restoration, with potential contributions to global habitat assessment models and international policies like the 30x30 Conservation Agenda. Full article
(This article belongs to the Special Issue Remote Sensing of Coastal, Wetland, and Intertidal Zones)
14 pages, 2794 KiB  
Article
Changes in Photosynthetic Efficiency, Biomass, and Sugar Content of Sweet Sorghum Under Different Water and Salt Conditions in Arid Region of Northwest China
by Weihao Sun, Zhibin He, Bing Liu, Dengke Ma, Rui Si, Rui Li, Shuai Wang and Arash Malekian
Agriculture 2024, 14(12), 2321; https://doi.org/10.3390/agriculture14122321 - 17 Dec 2024
Viewed by 344
Abstract
Sweet sorghum (Sorghum bicolor L. Moench) has significant cultivation potential in arid and saline–alkaline regions due to its drought and salt tolerance. This study aims to evaluate the mechanisms by which increased soil salinity and reduced irrigation affect the growth, aboveground biomass, [...] Read more.
Sweet sorghum (Sorghum bicolor L. Moench) has significant cultivation potential in arid and saline–alkaline regions due to its drought and salt tolerance. This study aims to evaluate the mechanisms by which increased soil salinity and reduced irrigation affect the growth, aboveground biomass, and stem sugar content of sweet sorghum. A two-year field experiment was conducted, with four salinity levels (CK: 4.17 dS/m, S1: 5.83 dS/m, S2: 7.50 dS/m, and S3: 9.17 dS/m) and three irrigation levels (W1: 90 mm, W2: 70 mm, and W3: 50 mm). The results showed that increased salinity and reduced irrigation significantly reduced both the emergence rate and aboveground biomass, with the decreases in the emergence rate ranging from 11.0% to 36.2% and the reductions in the aboveground biomass ranging from 15.9% to 43.8%. Additionally, increased soil salinity led to reductions in stem sugar content of 6.3% (S1), 8.8% (S2), and 12.8% (S3), respectively. The results also indicated that photosynthetic efficiency, including the net photosynthetic rate (Pn), stomatal conductance (Gs), and chlorophyll content (SPAD), was significantly hindered under increased water and salt stress, with the Pn decreasing by up to 50.4% and the SPAD values decreasing by up to 36.3% under the highest stress conditions. These findings underscore the adverse impacts of increased soil salinity and reduced irrigation on sweet sorghum’s growth, photosynthetic performance, and sugar accumulation, offering critical insights for optimizing its cultivation in arid and saline environments. Full article
(This article belongs to the Special Issue Crop Response and Tolerance to Salinity and Water Stress)
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<p>The total monthly rainfalls and mean monthly temperatures during the experiment.</p>
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<p>Plant height (<b>a</b>,<b>b</b>), stem diameter (<b>c</b>,<b>d</b>), internode number (<b>e</b>,<b>f</b>) and blade number (<b>g</b>,<b>h</b>) of sweet sorghum under different water and salt stress treatments in 2021 and 2022 (<span class="html-italic">n</span> = 9). Different letters indicate significant differences between treatments at a level of α = 0.05 with Duncan’s multiple range test. Error bars represent standard deviation.</p>
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<p>Photosynthetic rate (Pn, (<b>a</b>,<b>b</b>)), stomatal conductance (Gs, (<b>c</b>,<b>d</b>)), intercellular CO<sub>2</sub> concentration (Ci, (<b>e</b>,<b>f</b>)), and chlorophyll content (SPAD, (<b>g</b>,<b>h</b>)) of sweet sorghum under different water and salt stress treatments in 2021 and 2022 (<span class="html-italic">n</span> = 9). Different letters indicate significant differences between treatments at a level of α = 0.05 with Duncan’s multiple range test. Error bars represent standard deviation.</p>
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<p>Aboveground biomass accumulation and distribution of sweet sorghum in 2021 and 2022 (<span class="html-italic">n</span> = 9). Different letters indicate significant differences between treatments at a level of α = 0.05 with Duncan’s multiple range test. Error bars represent standard deviation.</p>
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<p>Total sugar content and distribution of sweet sorghum stems in 2021 and 2022 (<span class="html-italic">n</span> = 9). Different letters indicate significant differences between treatments at a level of α = 0.05 with Duncan’s multiple range test. Error bars represent standard deviation.</p>
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<p>The Principal Component Analysis (PCA) and correlation matrix illustrating the relationships between environmental factors (irrigation quota and salinity), growth characteristics (plant height, stem diameter, internode number, and blade number), photosynthetic parameters (Pn, Gs, Ci, and SPAD), aboveground biomass, and sugar content in sweet sorghum during the 2021 and 2022 growing seasons. The PCA biplot (<b>left</b>) shows the loadings and distribution of the variables across the first two principal components (PC1: 86.1%, PC2: 5.1%). The correlation matrix (<b>right</b>) reveals significant relationships (* <span class="html-italic">p</span> ≤ 0.05) between key variables, with positive correlations shown in red and negative correlations in blue.</p>
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12 pages, 3507 KiB  
Article
Sustainability Potential of Kikuyu Grass (Pennisetum clandestinum) in Livestock Farming of Peru’s Highland Regions
by Wuesley Yusmein Alvarez-García, Arturo Diaz Herrera, Yessica Becerra, Luis A. Vallejos-Fernández, Roy Florián, William Carrasco-Chilón, Marieta Cervantes-Peralta, Carlos Quilcate and Yudith Muñoz-Vilchez
Sustainability 2024, 16(24), 11021; https://doi.org/10.3390/su162411021 - 16 Dec 2024
Viewed by 393
Abstract
Sustainable Kikuyu (Pennisetum clandestinum) production in the Peruvian highlands was evaluated through productivity, growth, and chemical composition. This study assessed the effects of nitrogen (N) rate, organic matter application, and cutting frequency on Kikuyu grass’s yield, chemical composition, plant height, and [...] Read more.
Sustainable Kikuyu (Pennisetum clandestinum) production in the Peruvian highlands was evaluated through productivity, growth, and chemical composition. This study assessed the effects of nitrogen (N) rate, organic matter application, and cutting frequency on Kikuyu grass’s yield, chemical composition, plant height, and growth rate. The experiment followed a randomised block design with split plots. A multivariate analysis of variance (MANOVA) assessed the differences across study factors. Applying 120 kg of N ha−1 yr−1 raised the protein yield to 3454.53 kg ha−1, with a crude protein (CP) content of 23.54%. Moreover, fencing with cypress (Cupressus lusitanica) trees influenced the Kikuyu biomass, producing 19,176.23 kg of dry matter (DM) ha−1 yr−1 at 8.5–11.5 m from the tree base. Organic matter enhanced the Kikuyu aboveground biomass. While dry matter production showed no significant difference between 30- and 60-day cutting intervals, CP content was higher at 30 days (p < 0.05). Peak daily dry matter (DM) production occurred at 45 days, achieving a biomass accumulation of 21,186.9 kg of DM ha−1 yr−1. Given its high yield and favourable chemical composition, Kikuyu is a viable option for dairy cattle feed, especially in highland areas. Implementing a plant improvement programme for Kikuyu could further enhance its nutritional value for high-production dairy cows. Full article
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<p>Average annual rainfall at the Centro de Investigación y Promoción Pecuaria (CIPP) ‘Huayrapongo’, Los Baños del Inca District, Cajamarca Province, Peru.</p>
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<p>Experimental design (EXP1) using split plots as the main factor for the nitrogen and subplots for cutting frequency and organic matter application.</p>
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<p>Photographs of the evaluation of the experiment: (<b>A</b>) Homogenisation and signposting of the experiment. (<b>B</b>) Cleaning of alleys and establishment of the experiment. (<b>C</b>) Cutting of subplots after 30 days. (<b>D</b>) Cutting of subplots after 60 days.</p>
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<p>The growth rate in millimetres and dry matter accumulation per day at different cutting frequencies or phenological ages. Different letters in each column represent significant differences (Duncan’s test, <span class="html-italic">p</span> &lt; 0.05).</p>
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17 pages, 4141 KiB  
Article
Understory Vegetation Preservation Offsets the Decline in Soil Organic Carbon Stock Caused by Aboveground Litter Removal in a Subtropical Chinese Fir Plantation
by Bingshi Xu, Fangchao Wang, Kuan Liang, Ren Liu, Xiaofei Hu, Huimin Wang, Fusheng Chen and Mingquan Yu
Forests 2024, 15(12), 2204; https://doi.org/10.3390/f15122204 - 14 Dec 2024
Viewed by 389
Abstract
Forest soils play a key role in the global carbon (C) pool and in mitigating climate change. The mechanisms by which understory and litter management affect soil organic C (SOC) concentrations are unclear in subtropical forests. We collected soils along a 60 cm [...] Read more.
Forest soils play a key role in the global carbon (C) pool and in mitigating climate change. The mechanisms by which understory and litter management affect soil organic C (SOC) concentrations are unclear in subtropical forests. We collected soils along a 60 cm profile in a Chinese fir (Cunninghamia lanceolata) plantation treated by only aboveground litter removal and understory vegetation preservation (Only-ALR), both aboveground litter and understory vegetation removal (ALR+UVR), and both aboveground litter and understory vegetation preservation (control) for 7 consecutive years. Five SOC fractions, physico-chemical properties, the biomass of microbial communities and the activities of C-acquiring enzymes were measured, and their correlations were analyzed for each of four soil layers (0–10, 10–20, 20–40 and 40–60 cm). Compared with control, Only-ALR decreased labile C pool I (LP-C I), labile C pool II (LP-C II) and dissolved organic C (DOC) in topsoil (0–20 cm) but had no effect on soil C fractions in subsoil (20–60 cm). A higher fungi and bacteria biomass in LP-C II and microbial biomass C (MBC) stock was observed in Only-ALR compared to ALR+UVR treatment. Soil pH and Gram-positive bacteria generally had impact on the variation of soil C fractions in topsoil and subsoil, respectively. Understory vegetation preservation offsets the declines of SOC and recalcitrant C but not the decreases in labile C caused by aboveground litter removal. Understory vegetation helps sustain SOC stock mainly via decreased C input and elevated soil pH which would change microbial biomass and activities when litter is removed. Our findings highlight the potential influence of long-term understory manipulation practices on C pool within a soil profile in subtropical plantation forests. Full article
(This article belongs to the Special Issue Carbon, Nitrogen, and Phosphorus Storage and Cycling in Forest Soil)
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Figure 1
<p>The stocks of soil organic carbon (SOC) and its fractions varied with understory manipulation along a 60 cm profile in a Chinese fir plantation. LP-C I: labile C I pool; LP-C II: labile C II pool; RP-C: recalcitrant C pool; DOC: dissolved organic carbon; MBC: microbial biomass carbon; Control: none removal; Only-ALR: only aboveground litter removal; ALR+UVR: both aboveground litter and understory vegetation removal. Data are shown as means and standard errors of three replicate plots. Different capital letters above the bars indicate statistically significant differences among three treatments in the same layer and different small letters indicate statistically significant differences among four layers in the same treatment. ns <span class="html-italic">p</span> &gt; 0.05; * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Soil physico-chemical properties varied with understory manipulation along a 60 cm profile in a Chinese fir plantation. MWD: mean weight diameter of soil aggregates. Data are shown as means and standard errors of three replicate plots. Different capital letters above the bars indicate statistically significant differences among three treatments in the same layer and different small letters indicate statistically significant differences among four layers in the same treatment. Two-way ANOVA of the effects of treatments, soil layers and their interactions on soil physico-chemical properties, ns <span class="html-italic">p</span> &gt; 0.05; * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Soil microbial PLFAs biomass and the ratios of different microbial community varied with understory manipulation along a 60 cm profile in a Chinese fir plantation. G+: Gram-positive bacteria; G−: Gram-negative bacteria; F/B: the ratio of fungi to bacteria; G+/G−: the ratio of G+ bacteria to G− bacteria. Data are shown as means and standard errors of three replicate plots. Different capital letters above the bars indicate statistically significant differences among three treatments in the same layer and different small letters indicate statistically significant differences among four layers in the same treatment. Two-way ANOVA of the effects of treatments, soil layers and their interactions on soil microbial properties, ns <span class="html-italic">p</span> &gt; 0.05; * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Soil C-acquiring enzyme activities varied with understory manipulation along a 60 cm profile in a Chinese fir plantation. BG: β-glucosidase, CB: cellobioside. Data are shown as means and standard errors of three replicate plots. Different capital letters above the bars indicate statistically significant differences among three treatments in the same layer and different small letters indicate statistically significant differences among four layers in the same treatment. Two-way ANOVA of the effects of treatments, soil layers and their interactions on soil enzyme activities, * <span class="html-italic">p</span> &lt; 0.05; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Redundancy analysis of soil organic carbon (SOC) fractions and soil other properties driven by understory manipulation along a 60 cm profile in a Chinese fir plantation. SOC fractions are represented as black solid lines with filled arrows and soil environmental factors are represented as blue solid lines with empty arrows. LP-C I: labile C I pool; LP-C II: labile C II pool; RP-C: recalcitrant C pool; DOC: dissolved organic carbon; MBC: microbial biomass carbon; MWD: mean weight diameter of soil aggregates; BG: β-glucosidase; CB: cellobioside; G+: Gram-positive bacteria; G−: Gram-negative bacteria.</p>
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21 pages, 7388 KiB  
Article
Groundcovers Improve Soil Properties in Woody Crops Under Semiarid Climate
by Blanca Sastre, Omar Antón-Iruela, Ana Moreno-Delafuente, Mariela J. Navas, Maria Jose Marques, Javier González-Canales, Juan Pedro Martín-Sanz, Rubén Ramos, Andrés García-Díaz and Ramón Bienes
Agriculture 2024, 14(12), 2288; https://doi.org/10.3390/agriculture14122288 - 13 Dec 2024
Viewed by 414
Abstract
There is a worldwide need to enhance soil health, particularly in agricultural areas. Groundcovers are widely recognized sustainable land management (SLM) practices that improve soil health and provide climate benefits by sequestering atmospheric carbon. A paired-plots study was carried out in woody crops [...] Read more.
There is a worldwide need to enhance soil health, particularly in agricultural areas. Groundcovers are widely recognized sustainable land management (SLM) practices that improve soil health and provide climate benefits by sequestering atmospheric carbon. A paired-plots study was carried out in woody crops (17 sites, olive groves and vineyards) in a semiarid area of central Spain to measure soil parameter changes induced by different management practices in the medium term. The selection across different locations aimed to determine whether the impact of groundcovers was substantial enough to produce significant changes in the studied soil parameters, even when accounting for variations in soil types. Each site consisted of neighboring plots: One was managed with conventional tillage (CT). The other was managed with an alternative soil management practice: (1) spontaneous groundcovers (GC) or (2) no soil management (NM). Vegetation and soil parameters were measured in spring 2021. Despite the low aboveground biomass in GC (77 g m−2), this treatment improved soil organic carbon stock (+4.4 Mg ha−1), infiltration rate (+50%), and aggregate stability (+35%) compared to CT, but higher compaction along the profile was detected. NM only resulted in a better infiltration rate, with high soil compaction. Our study provides supplementary information to long-term studies, which may include soil biological parameters as soil health indicators and yield response. Outcomes of these soil assessments lend support to the implementation of agricultural policies that promote GC as a SLM practice, in order to extend this technique to woody crops. Full article
(This article belongs to the Special Issue Soil Conservation in Olive Orchard)
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<p>The Community of Madrid in light gray on the map of Spain (<b>a</b>) and sampling points (pink circles) on the Community of Madrid map. (<b>b</b>) A red line marks the “Las Vegas region” and the purple one the “La Campina region”.</p>
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<p>Pictures of the pairs of plots in 3 sites: (<b>a</b>) site O-8 (<b>a1</b>: GC, <b>a2</b>: CT), (<b>b</b>) site O-9 (<b>b1</b>: NM, <b>b2</b>: CT), and (<b>c</b>) site O-28 (<b>c1</b>: GC, <b>c2</b>: CT).</p>
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<p>Number of species per family in the alternative managements (GC and NM).</p>
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<p>Total SOC stock for each treatment (GC: groundcover; NM: no management; and CT: conventional tillage) and depth.</p>
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<p>Least-squares means of SOC stock for the treatments (GC: groundcover; NM: no management; CT: conventional tillage) and depth.</p>
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<p>Waterstable aggregates (WSAs) for the treatments (GC: groundcover; NM: no management; and CT: conventional tillage) at different depths.</p>
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<p>Least–squares means of water–stable aggregates (%) for the treatments (GC: groundcover; NM: no management; and CT: conventional tillage) and depth.</p>
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<p>Penetration resistance (PR) for the treatments (GC: groundcover; NM: no management; and CT: conventional tillage) and depths from 2.5 to 45 cm (N = 8).</p>
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<p>Fruchterman–Reingold correlogram representation of the Pearson correlation matrix between the main variables. Stronger correlations are represented by thicker lines, with green lines indicating positive correlations and red lines indicating negative correlations. The included variables are bulk density (BD), aboveground biomass (Biomass), vegetation cover, soil organic carbon stock (SOC), water–stable microaggregates (WSA), infiltration rate (Infiltration), field capacity (FC), permanent wilting point (PWP), and penetration resistance (PR).</p>
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<p>Percentage of soil covered by vegetation (living or dead, including mosses, lichens, and litter); rocks and bare soil in each site considering the type of soil management practice (A: alternative management, B: conventional tillage, C: permanent seeded grass, and D: annual legume cover crop) measured in spring (N = 4).</p>
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<p>Dry aboveground biomass measured in spring in each site considering the type of soil management practice (A: alternative management, B: tillage, C: permanent seeded grass, and D: annual legume cover crop) (N = 4).</p>
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<p>Soil organic carbon (SOC) stock per depth in each site with the plot under alternative management (A), conventional tillage (B), permanent grass cover (C), and annual legume cover (D) (N = 4).</p>
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<p>Water aggregate stability (WAS) in percentage in each site, with the soil managements and depths (N = 4). GC: groundcover; NM: no management; and CT: conventional tillage.</p>
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<p>Infiltration rate (mm h<sup>−1</sup>) at the different sites with soil managements (N = 4). GC: groundcover; NM: no management; and CT: conventional tillage.</p>
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<p>Penetration resistance (N) at the different sites with soil managements (N = 8). GC: groundcover; NM: no management; and CT: conventional tillage.</p>
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17 pages, 3424 KiB  
Article
Role of the Foliar Endophyte Colletotrichum in the Resistance of Invasive Ageratina adenophora to Disease and Abiotic Stress
by Ailing Yang, Yuxuan Li, Zhaoying Zeng and Hanbo Zhang
Microorganisms 2024, 12(12), 2565; https://doi.org/10.3390/microorganisms12122565 - 12 Dec 2024
Viewed by 344
Abstract
Plant-associated fungi often drive plant invasion success by increasing host growth, disease resistance, and tolerance to environmental stress. A high abundance of Colletotrichum asymptomatically accumulated in the leaves of Ageratina adenophora. In this study, we aimed to clarify whether three genetically distinct [...] Read more.
Plant-associated fungi often drive plant invasion success by increasing host growth, disease resistance, and tolerance to environmental stress. A high abundance of Colletotrichum asymptomatically accumulated in the leaves of Ageratina adenophora. In this study, we aimed to clarify whether three genetically distinct endophytic Colletotrichum isolates (AX39, AX115, and AX198) activate invasive plant defenses against disease and environmental stress. We observed that, in the absence of pathogen attack and environmental stress, the foliar endophyte Colletotrichum reduced photosynthesis-related physiological indicators (i.e., chlorophyll content and soluble sugar content), increased resistance-related indicators (i.e., total phenolic (TP) and peroxidase (POD) activity), and decreased the biomass of A. adenophora. However, endophytic Colletotrichum strains exhibit positive effects on resistance to certain foliar pathogen attacks. Strains AX39 and AX115 promoted but AX198 attenuated the pathogenic effects of pathogen strains G56 and Y122 (members of Mesophoma ageratinae). In contrast, AX39 and AX115 weakened, but AX198 had no effect on, the pathogenic effect of the pathogen strain S188 (Mesophoma speciosa; Didymellaceae family). We also found that endophytes increase the biomass of A. adenophora under drought or nutrient stress. Strain AX198 significantly increased stem length and chlorophyll content under drought stress. Strain AX198 significantly increased the aboveground dry weight, AX115 increased the stem length, and AX39 significantly increased the chlorophyll content under nutrient stress. Our results revealed that there are certain positive effects of foliar Colletotrichum endophytes on A. adenophora in response to biotic and abiotic stresses, which may be beneficial for its invasion. Full article
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<p>Physiological indices of <span class="html-italic">A. adenophora</span> inoculated with endophytic <span class="html-italic">Colletotrichum</span> strains. (<b>a</b>) Chlorophyll content, (<b>b</b>) soluble sugar content, (<b>c</b>) total phenol content, and (<b>d</b>) peroxidase activity. Dots with different colors represent the raw data of each sample inoculated with the <span class="html-italic">Colletotrichum</span> AX39, AX115, and AX198 strains. The RI represents the response index, where the negative RI in panels (<b>a</b>,<b>b</b>) indicates reduced chlorophyll content and soluble sugar content in the treatment with <span class="html-italic">Colletotrichum</span> spp. infection compared with the control without <span class="html-italic">Colletotrichum</span> spp. infection. The positive RIs in panels (<b>c</b>,<b>d</b>) indicate increased total phenol content and peroxidase POD activity in the treatment with <span class="html-italic">Colletotrichum</span> spp. infection compared with the control without <span class="html-italic">Colletotrichum</span> spp. infection. Nonparametric Mann–Whitney U tests or independent sample T tests were used to identify the differences between each treatment group and the control group (* &lt;0.05, *** &lt;0.001). Post hoc comparisons were performed via Duncan’s test for equal variance and Dunnett’s test for unequal variance (T3 test) to determine whether the difference in the RI was significant among the treatments inoculated with AX39, AX115, and AX198, with different letters indicating significant differences. The error bars are the standard errors.</p>
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<p>Biomass of <span class="html-italic">A. adenophora</span> inoculated with endophytic <span class="html-italic">Colletotrichum</span> strains. (<b>a</b>) Aboveground parts, (<b>b</b>) underground parts, (<b>c</b>) branch number, (<b>d</b>) stem length, (<b>e</b>) root length, and (<b>f</b>) root–to-shoot ratio. Dots with different colors represent the raw data of each sample inoculated with the <span class="html-italic">Colletotrichum</span> AX39, AX115, and AX198 strains. A negative RI indicates a reduced biomass of <span class="html-italic">A. adenophora</span> in the experimental treatment with <span class="html-italic">Colletotrichum</span> spp. infection compared with that in the control without <span class="html-italic">Colletotrichum</span> spp. infection. Nonparametric Mann–Whitney U tests or independent sample T tests were used to identify the differences between each treatment group and the control group (* &lt;0.05, ** &lt;0.01, *** &lt;0.001). Post hoc comparisons were performed via Duncan’s test for equal variance and Dunnett’s test for unequal variance (T3 test) to determine whether the difference in the RI was significant among the treatments inoculated with AX39, AX115, and AX198, with different letters indicating significant differences. The error bars are the standard errors.</p>
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<p>LMA (dry weight per unit area) of <span class="html-italic">A. adenophora</span> inoculated with endophytic <span class="html-italic">Colletotrichum</span> strains. (<b>a</b>) The second pair of leaves, (<b>b</b>) the fifth pair of leaves. Dots with different colors represent the raw data of each sample inoculated with the <span class="html-italic">Colletotrichum</span> AX39, AX115, and AX198 strains. A negative RI indicates a reduced LMA of <span class="html-italic">A. adenophora</span> in the experimental treatment with <span class="html-italic">Colletotrichum</span> spp. infection compared with that in the control without <span class="html-italic">Colletotrichum</span> spp. infection. Nonparametric Mann–Whitney U tests or independent sample T tests were used to identify the differences between each treatment group and the control group (* &lt;0.05). Post hoc comparisons were performed via Duncan’s test for equal variance and Dunnett’s test for unequal variance (T3 test) to determine whether the difference in the RI was significant among the different treatments inoculated with AX39, AX115, and AX198, with different letters indicating significant differences. The error bars are the standard errors.</p>
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<p>The asymptomatic leaves of <span class="html-italic">A. adenophora</span> plants inoculated with a <span class="html-italic">Colletotrichum</span> spore mixture (<b>a</b>) and wounded and inoculated with agar discs of <span class="html-italic">Colletotrichum</span> (<b>b</b>). “CK” represents the control group without <span class="html-italic">Colletotrichum</span> inoculation.</p>
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<p>Pathogenicity effects of inoculating endophyte <span class="html-italic">Colletotrichum</span> strains on <span class="html-italic">A. adenophora</span> after challenge with the (<b>a</b>) pathogen G56, (<b>b</b>) pathogen Y122, and (<b>c</b>) pathogen S188. Dots with different colors represent the raw data of each sample inoculated with <span class="html-italic">the Colletotrichum</span> AX39, AX115, and AX198 strains. The specific leaf spot area and morphology are shown in (<b>d</b>); scale bar = 10 mm, and “CK” represents the control group without <span class="html-italic">Colletotrichum</span> inoculation. Nonparametric Mann–Whitney U tests or independent sample T tests were used to identify the differences between each treatment group and the control group (* &lt;0.05, *** &lt;0.001). Post hoc comparisons were performed via Duncan’s test for equal variance and Dunnett’s test for unequal variance (T3 test) to determine whether the difference in the RI was significant among the different treatments inoculated with AX39, AX115, and AX198, with different letters indicating significant differences. The error bars are the standard errors.</p>
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<p>Biomass and chlorophyll content of <span class="html-italic">A. adenophora</span> inoculated with endophyte <span class="html-italic">Colletotrichum</span> strains under normal conditions and drought stress. (<b>a</b>) Aboveground parts, (<b>b</b>) underground parts, (<b>c</b>) root/shoot ratio, (<b>d</b>) stem length, (<b>e</b>) root length, (<b>f</b>) branch number, and (<b>g</b>) chlorophyll content. A positive RI indicates an increased biomass of <span class="html-italic">A. adenophora</span> in the drought stress (−W) treatment with <span class="html-italic">Colletotrichum</span> strain (AX39, AX115, or AX198) inoculation compared with that without <span class="html-italic">Colletotrichum</span> inoculation. The formula is as follows: (treatment_Wcontrol_W)/control_W. Nonparametric Mann–Whitney U tests or independent sample T tests were used to identify the differences between each drought stress treatment group and the normal treatment group (** &lt;0.01). Post hoc comparisons were performed via Duncan’s test for equal variance and Dunnett’s test for unequal variance (T3 test) to show that the differences in the RIs were significant among the treatments inoculated with strains AX39, AX115, and AX198, with different letters indicating significant differences. The error bars are the standard errors.</p>
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<p>Growth effects of <span class="html-italic">A. adenophora</span> inoculated with endophyte <span class="html-italic">Colletotrichum</span> strains under nutrient stress and drought stress. Individuals of <span class="html-italic">A. adenophora</span> were inoculated with AX39, AX115, or AX198 and grown for one month in a plant growth chamber under nutrient stress (−N) and drought (−W).</p>
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<p>Biomass and chlorophyll content of <span class="html-italic">A. adenophora</span> plants inoculated with endophytic <span class="html-italic">Colletotrichum</span> strains under normal conditions and nutrient stress conditions. (<b>a</b>) Aboveground parts, (<b>b</b>) underground parts, (<b>c</b>) root/shoot ratio, (<b>d</b>) stem length, (<b>e</b>) root length, (<b>f</b>) branch number, and (<b>g</b>) chlorophyll content. A positive RI indicates an increased biomass of <span class="html-italic">A. adenophora</span> in the nutrient stress (−N) treatment with <span class="html-italic">Colletotrichum</span> strain (AX39, AX115, or AX198) inoculation compared with that without <span class="html-italic">Colletotrichum</span> inoculation. The formula is as follows: (treatment_Ncontrol_N)/control_N. Nonparametric Mann–Whitney U tests or independent sample T tests were used to identify the differences between each nutrient stress treatment and the normal treatment (* &lt;0.05,*** &lt;0.001). Post hoc comparisons were performed via Duncan’s test for equal variance and Dunnett’s test for unequal variance (T3 test) to show that the differences in the RIs were significant among the treatments inoculated with strains AX39, AX115, and AX198, with different letters indicating significant differences. The error bars are the standard errors.</p>
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14 pages, 1234 KiB  
Article
Heat Wave Adaptations: Unraveling the Competitive Dynamics Between Invasive Wedelia trilobata and Native Wedelia chinensis
by Haochen Yu, Cheng Han, Guangqian Ren, Xuanwen Wu, Shanshan Qi, Bin Yang, Miaomiao Cui, Xue Fan, Zhaoqi Zhu, Zhicong Dai and Daolin Du
Plants 2024, 13(24), 3480; https://doi.org/10.3390/plants13243480 - 12 Dec 2024
Viewed by 370
Abstract
Heat waves (HW) are projected to become more frequent and intense with climate change, potentially enhancing the invasiveness of certain plant species. This study aims to compare the physiological and photosynthetic responses of the invasive Wedelia trilobata and its native congener Wedelia chinensis [...] Read more.
Heat waves (HW) are projected to become more frequent and intense with climate change, potentially enhancing the invasiveness of certain plant species. This study aims to compare the physiological and photosynthetic responses of the invasive Wedelia trilobata and its native congener Wedelia chinensis under simulated heat wave conditions (40.1 °C, derived from local historical data). Results show that W. trilobata maintained higher photosynthetic efficiency, water-use efficiency (WUE), and total biomass under HW, suggesting that its ability to optimize above-ground growth contributes to its success in heat-prone environments. In contrast, W. chinensis focused more on root development and antioxidant protection, exhibiting a decrease in total biomass under heat wave conditions. These results indicate that W. trilobata employs a more effective strategy to cope with heat stress, likely enhancing its competitive advantage in regions affected by heat waves. This study highlights the importance of understanding species-specific responses to extreme climate events and underscores the potential for heat waves to drive ecological shifts, favoring invasive species with higher phenotypic plasticity. Full article
(This article belongs to the Special Issue Interactions within Invasive Ecosystems)
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<p>Comparative response of <span class="html-italic">W. trilobata</span> and <span class="html-italic">W. chinensis</span> to control (CK) and heat wave (T) in mixed culture conditions. Graphs (<b>a</b>–<b>e</b>) display the mean values and standard errors for plant height, total biomass, root length, leaf mass, and leaf surface area, respectively. Statistically significant differences are indicated as follows: ‘ns’ denotes no statistically significant difference, while * indicates a statistically significant difference at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Comparative response of <span class="html-italic">W. trilobata</span> and <span class="html-italic">W. chinensis</span> to control (CK) and heat wave (T) in mixed culture conditions. Graphs (<b>a</b>–<b>h</b>) display the mean values and standard errors for chlorophyll content (<b>a</b>), leaf nitrogen content (<b>b</b>), flavonoid content (<b>c</b>), anthocyanin content (<b>d</b>), Fv/Fm (<b>e</b>), transpiration rate (<b>f</b>), water use efficiency (<b>g</b>), and CO<sub>2</sub> assimilation rate (<b>h</b>), respectively. Statistically significant differences are indicated as follows: ‘ns’ denotes no statistically significant difference, while * and ** indicate a statistically significant difference at <span class="html-italic">p</span> &lt; 0.05 and <span class="html-italic">p</span> &lt; 0.01, respectively.</p>
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<p>Path analyses and stress response indices of <span class="html-italic">W. trilobata</span> and <span class="html-italic">W. chinensis</span> under HW conditions. Panels (<b>a</b>,<b>b</b>) show path analyses for <span class="html-italic">W. trilobata</span> and <span class="html-italic">W. chinensis</span>, respectively, illustrating the relationships between HW, vegetative growth, photosynthetic capacity, and either invasiveness (<span class="html-italic">W. trilobata</span>) or resistance (<span class="html-italic">W. chinensis</span>). Statistically significant pathways are indicated by * and ***, with <span class="html-italic">p</span> &lt; 0.05 and <span class="html-italic">p</span> &lt; 0.001, while R<sup>2</sup> values represent the proportion of variance explained by the model. Panel (<b>c</b>) displays the stress resistance index for both species under HW conditions. Panel (<b>d</b>) shows the relative competition intensity index (RCI) for <span class="html-italic">W. trilobata</span> against <span class="html-italic">W. chinensis</span> under control and HW. Panel (<b>e</b>) illustrates the relative dominance index (RDI) of <span class="html-italic">W. trilobata</span> against <span class="html-italic">W. chinensis</span> under control and HW.</p>
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17 pages, 3482 KiB  
Article
Improving Lettuce Tolerance to Cadmium Stress: Insights from Raw vs. Cystamine-Modified Biochar
by Rongqi Chen, Xi Duan, Ruoxuan Xu and Tao Zhao
Horticulturae 2024, 10(12), 1323; https://doi.org/10.3390/horticulturae10121323 - 11 Dec 2024
Viewed by 324
Abstract
Understanding the interactions among biochar, plants, soils, and microbial communities is essential for developing effective and eco-friendly soil remediation strategies. This study investigates the role of cystamine-modified biochar (Cys-BC) in alleviating cadmium (Cd) toxicity in lettuce, comparing its effects to those of raw [...] Read more.
Understanding the interactions among biochar, plants, soils, and microbial communities is essential for developing effective and eco-friendly soil remediation strategies. This study investigates the role of cystamine-modified biochar (Cys-BC) in alleviating cadmium (Cd) toxicity in lettuce, comparing its effects to those of raw biochar. Lettuce plants were exposed to Cd stress (1–5 mg kg−1), and the effects of Cys-BC were assessed by measuring plant biomass, photosynthetic efficiency, antioxidant activity, Cd bioavailability, and soil microbial diversity. Cys-BC significantly enhanced plant biomass, with increases in above-ground growth (40.54–44.95%) and root biomass (37.54–47.44%) compared to Cd-stressed controls. Photosynthetic parameters improved by up to 91.02% for chlorophyll-a content and 37.93% for the net photosynthetic rate. Cys-BC mitigated oxidative stress, increasing antioxidant activities by 73.83% to 99.39%. Additionally, Cys-BC reduced available Cd levels in the soil, primarily through enhanced cation exchange rather than changes in pH. Plant responses to Cd stress included increased glutathione reductase activity and elevated cysteine levels, which further contributed to Cd passivation. Microbial diversity in the soil increased, particularly among sulfur- and nitrogen-cycling bacteria such as Deltaproteobacteria and Nitrospira, suggesting their role in mitigating Cd stress. These findings highlight the potential of Cys-BC as an effective agent for the remediation of Cd-contaminated soils. Full article
(This article belongs to the Special Issue Microbial Interaction with Horticulture Plant Growth and Development)
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<p>Effects of different biochar treatments on oxidative stress markers content in lettuce: (<b>a</b>) malondialdehyde, (<b>b</b>) hydrogen peroxide, (<b>c</b>) glutathione, and (<b>d</b>) cysteine. Lowercase (a–d) letters are used to denote differential rankings.</p>
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<p>Effects of different biochar treatments on the activity of antioxidant enzymes of lettuce: (<b>a</b>) superoxide dismutase, (<b>b</b>) peroxidase, (<b>c</b>) catalase, and (<b>d</b>) reductase. Lowercase (a–d) letters are used to denote differential rankings.</p>
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<p>The linear regression models correlating Cd residues in lettuce with DTPA-extractable Cd in soil. (<b>a</b>) shoot Cd and (<b>b</b>) root Cd under raw BC treatments; (<b>c</b>) shoot Cd and (<b>d</b>) root Cd under Cys-BC treatments.</p>
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<p>Effects of different biochar treatments on soil properties: (<b>a</b>) proportion of various Cd fractions, (<b>b</b>) DPTA available Cd content, (<b>c</b>) soil pH, and (<b>d</b>) soil CEC.</p>
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<p>The <span class="html-italic">t</span>-test for the variability in the abundance of soil bacteria and fungi in the different biochar treatments, (<b>a</b>) differences in bacteria of raw BC treatments at the phylum level, (<b>b</b>) differences in bacteria of Cys-BC treatments at the phylum level, (<b>c</b>) differences in fungi at the phylum level, (<b>d</b>) differences in bacteria of raw BC treatments at the program level, (<b>e</b>) differences in bacteria of Cys-BC treatments at the program level, (<b>f</b>) differences in fungi at the program level, (<b>g</b>) differences in bacteria of raw BC treatments at the order level, (<b>h</b>) differences in bacteria in Cys-BC treatments at the order level, (<b>i</b>) differences in fungi at the order level. Analyses of variance levels of significance (LS): * <span class="html-italic">p</span> &lt; 0.1, ** <span class="html-italic">p</span> &lt; 0.01, ns: not significant.</p>
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<p>Canonical correspondence analysis (CCA) of bacteria (<b>a</b>,<b>b</b>) fungi in soil sample groups.</p>
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15 pages, 4995 KiB  
Article
Biomass Allocation in Gentianella turkestanorum is Driven by Environmental Factors and Functional Traits
by Qingzhen Sun, Enzhao Wang, Xiaoling Fan and Bin Liu
Plants 2024, 13(24), 3463; https://doi.org/10.3390/plants13243463 - 11 Dec 2024
Viewed by 359
Abstract
Exploring the elevation distribution characteristics, biomass allocation strategies, and the effects of elevation, soil factors, and functional traits on the biomass of Gentianella turkestanorum (Gand.) Holub is of great significance for the production, development, utilization, and protection of the medicinal material resources. In [...] Read more.
Exploring the elevation distribution characteristics, biomass allocation strategies, and the effects of elevation, soil factors, and functional traits on the biomass of Gentianella turkestanorum (Gand.) Holub is of great significance for the production, development, utilization, and protection of the medicinal material resources. In this study, we investigated the biomass and functional traits of the root, stem, leaf, and flower of G. turkestanorum, analyzing their elevation distribution patterns, allometric growth trajectories, and their correlations. The results showed that the biomass of different organs of G. turkestanorum decreases with increasing elevation, and the belowground biomass/aboveground biomass increases with elevation. The flower biomass accounts for 59.24% of the total biomass, which was significantly higher than that of other organs. G. turkestanorum biomass follows the optimal allocation theory, adopting a ‘pioneering’ growth strategy at low elevations and a ‘conservative’ strategy at high elevations. Chlorophyll content and leaf thickness of G. turkestanorum were positively correlated with elevation, but leaf dry matter content and the number of flowers were negatively correlated with elevation. Compared to functional traits, elevation and soil factors have a stronger explanatory power regarding the biomass of G. turkestanorum. Elevation, soil moisture content, pH, available phosphorus, total nitrogen, and ammonium nitrogen significantly affect the biomass of G. turkestanorum, with only pH showing a positive correlation with biomass. Among these factors, elevation, soil moisture content, and pH significantly impact the accurate prediction of G. turkestanorum biomass. The number of flowers, crown width, root length, root diameter, and leaf dry matter content all have a significantly positive correlation with the biomass of G. turkestanorum, with the number of flowers and root diameter making significant contributions to the accurate prediction of biomass. Elevation can directly affect the biomass of G. turkestanorum and can also indirectly affect it through other pathways, with the direct effect being greater than the indirect effect. Full article
(This article belongs to the Section Plant Ecology)
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<p>Habitat photo (<b>A</b>) and sampling sites (<b>B</b>) of <span class="html-italic">Gentianella turkestanorum</span> (Gand.) Holub.</p>
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<p>Elevation distribution characteristics of biomass and BGB/AGB in different organs. The red line indicates a linear fit. BGB/AGB: belowground biomass/aboveground biomass. Elevation distribution characteristics of root (<b>A</b>), stem (<b>B</b>), leaf (<b>C</b>), flower (<b>D</b>), total biomass (<b>E</b>) and BGB/AGB (<b>F</b>).</p>
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<p>Allometric growth trajectories of different organ biomass of <span class="html-italic">G. turkestanorum</span> at different elevation gradients. (<b>A</b>) log AGB–log BGB; (<b>B</b>) log SB–log RB; (<b>C</b>) log LB–log RB; (<b>D</b>) log FB–log RB; (<b>E</b>) log LB–log SB; (<b>F</b>) log FB–log SB; (<b>G</b>) log FB–log LB. In the histograms, uppercase letters denote differences in slopes and lowercase letters denote differences in intercepts among different elevations gradients.</p>
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<p>Elevation distribution of functional traits. H: plant height; CD: crown diameter; RL: root length; RD: root diameter; SL: stem length; SD: stem diameter; CHL: chlorophyll; LDMC: leaf dry matter content; LT: leaf thickness; LA: leaf area; SLA: specific leaf area; NOFs: number of flowers: COFs: crown diameter of flowers. The same below.</p>
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<p>Pearson correlation between functional traits and elevation. Blue indicates positive correlation, red indicates negative correlation, *: <span class="html-italic">p</span> &lt; 0.05; **: <span class="html-italic">p</span> &lt; 0.01; ***: <span class="html-italic">p</span> &lt; 0.001. H: plant height; CD: crown diameter; RL: root length; RD: root diameter; SL: stem length; SD: stem diameter; CHL: chlorophyll; LDMC: leaf dry matter content; LT: leaf thickness; LA: leaf area; SLA: specific leaf area; NOFs: number of flowers; COFs; crown diameter of flowers.</p>
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<p>Variance decomposition results of biomass of <span class="html-italic">G. turkestanorum</span>.</p>
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<p>RDA ranking of biomass and elevation-soil factors (<b>A</b>) and functional traits (<b>B</b>) of <span class="html-italic">G. turkestanorum</span>. TC: soil total carbon content; TN: soil total nitrogen content; TP: soil total phosphorus content; TK: soil total potassium content; AN: soil ammonium nitrogen content; NN: soil nitrate nitrogen content; AP: soil available phosphorus content; AK: soil available potassium content; SW: soil water content; pH: soil ph.</p>
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<p>Analysis of biomass and elevation-soil factors and functional traits by random forest model in <span class="html-italic">G. turkestanorum</span>. “Increase in MSE” means that when a factor is removed, the accuracy of predicting biomass decreases. *: <span class="html-italic">p</span> &lt; 0.05; **: <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Direct and indirect drivers of biomass of <span class="html-italic">G. turkestanorum</span>. The number next to the arrow is the normalized path coefficient, which represents the size of the direct normalized effect of the relationship (positive values represent positive effects and negative values represent negative effects). The black lines represent positive effects and the red lines represent negative effects. The solid line means there is a significant correlation, and the dashed line means there is no significant correlation. The respective significance of each predictor was * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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14 pages, 6324 KiB  
Article
A Comparative Study on Rapeseed Sprayed with Film Antitranspirant Under Two Contrasting Rates of Soil Water Depletion
by Jie Xiang, Martin C. Hare, Laura H. Vickers and Peter S. Kettlewell
Agronomy 2024, 14(12), 2944; https://doi.org/10.3390/agronomy14122944 - 10 Dec 2024
Viewed by 327
Abstract
Rapeseed (Brassica napus L.), as one of the most important oil crops around the world, has been affected by drought considerably, particularly at flowering when crops are most sensitive to water stress. It has been shown that film antitranspirant (AT) can effectively [...] Read more.
Rapeseed (Brassica napus L.), as one of the most important oil crops around the world, has been affected by drought considerably, particularly at flowering when crops are most sensitive to water stress. It has been shown that film antitranspirant (AT) can effectively reduce the yield loss of droughted crops if applied at the critical stage. However, the mechanism remains unclear by which AT mitigates drought damage to plants under different rates of water depletion. Two experiments in randomised complete block designs were conducted on spring rapeseed with two levels of irrigation, well-watered (WW) and water-stressed (WS), where slow and fast soil water depletion were imposed during the flowering stage in mesocosms (Expt 1_SD) and pots (Expt 2_FD), respectively, and different concentrations of AT, 0, 0.25%, 0.5%, and 1% and 0, 0.5%, and 1%, were applied. Leaf physiological traits, seed yield, and yield components were determined. The results showed that compared to WW, water stress reduced leaf relative water content (RWC) by 2% and 6% in Expt 1_SD and Expt 2_FD, respectively, and had detrimental effects on stomatal conductance, CO2 assimilation rate, and intrinsic water use efficiency. Following AT application, a positive linear relationship was observed in leaf RWC against AT concentrations, albeit with large variations. In Expt 1_SD, seed dry weight and aboveground biomass increased significantly with increasing AT concentrations, while no yield responses were observed in Expt 2_FD, indicating that soil water status may play an important role in rapeseed responses to AT application regardless of concentrations. Therefore, the timing of AT application needs to consider soil water conditions in addition to the growth development of rapeseed plants. Full article
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<p>Daily mean temperature (°C, <span class="html-fig-inline" id="agronomy-14-02944-i001"><img alt="Agronomy 14 02944 i001" src="/agronomy/agronomy-14-02944/article_deploy/html/images/agronomy-14-02944-i001.png"/></span>), maximum (<span class="html-fig-inline" id="agronomy-14-02944-i002"><img alt="Agronomy 14 02944 i002" src="/agronomy/agronomy-14-02944/article_deploy/html/images/agronomy-14-02944-i002.png"/></span>) and minimum (<span class="html-fig-inline" id="agronomy-14-02944-i003"><img alt="Agronomy 14 02944 i003" src="/agronomy/agronomy-14-02944/article_deploy/html/images/agronomy-14-02944-i003.png"/></span>) relative humidity (%) inside the polytunnel/glasshouse during the growing season in Expt 1_SD (<b>a</b>) and Expt 2_FD (<b>b</b>), where two vertical lines represent the days soil water depletion started and stopped, respectively, and arrows represent the day of spraying film antitranspirant; (<b>c</b>) daily solar radiation (MJ m<sup>−2</sup>, <span class="html-fig-inline" id="agronomy-14-02944-i004"><img alt="Agronomy 14 02944 i004" src="/agronomy/agronomy-14-02944/article_deploy/html/images/agronomy-14-02944-i004.png"/></span>) recorded by the meteorological station based at Harper Adams University, where the duration between two vertical solid and dashed lines represents the period of the growing season in Exp1_SD and Expt 2_FD, respectively.</p>
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<p>Soil volumetric water content and soil matric water potential of mesocosms under fast water depletion (FD) and well-watered (WW) conditions in Expt 1_SD (<b>a</b>,<b>b</b>), and of pots under slow water depletion (SD) and WW conditions in Expt 2_FD (<b>c</b>,<b>d</b>). Dotted lines represent field capacity (FC) and the permanent wilting point (PWP), as indicated on the graph. Black arrows represent the day of spraying film antitranspirant. Data are means (n = 9 in Expt 1_SD; n = 10 in Expt 2_FD) ± standard error of the means (SEM).</p>
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<p>Leaf relative water content of rapeseed plants subjected to well-watered (WW) and water-stressed (WS) conditions with the application of film antitranspirant (AT) in Expt 1_SD (<b>a</b>) and in Expt 2_FD (<b>b</b>). Data are means of combined two samplings (n = 9 in Expt 1; n = 10 in Expt 2) ± standard error of the means (SEM). Different lowercase letters indicate significant differences between treatments according to Tukey’s test.</p>
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<p>Comparison of yield parameters in Expt 1_SD and Expt 2_FD of rapeseed plants subjected to well-watered (WW) and water-stressed (WS) conditions with application of film antitranspirant (AT) at different concentrations, i.e., aboveground biomass, seed dry weight, pod number per plant, seed number per pod, thousand-seed weight (TSW) and harvest index (<b>a</b>–<b>l</b>). Data are means (n = 9 in Expt 1; n = 10 in Expt 2) ± standard error of the means (SEM). Different lowercase letters indicate significant differences between treatments according to Tukey’s test.</p>
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<p>Comparison of yield parameters in Expt 1_SD and Expt 2_FD of rapeseed plants subjected to well-watered (WW) and water-stressed (WS) conditions with application of film antitranspirant (AT) at different concentrations, i.e., aboveground biomass, seed dry weight, pod number per plant, seed number per pod, thousand-seed weight (TSW) and harvest index (<b>a</b>–<b>l</b>). Data are means (n = 9 in Expt 1; n = 10 in Expt 2) ± standard error of the means (SEM). Different lowercase letters indicate significant differences between treatments according to Tukey’s test.</p>
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<p>Relationships between seed dry weight and yield components of rapeseed plants subjected to conditions in Expt 1_SD (<b>a</b>,<b>c</b>) and Expt 2_FD (<b>b</b>,<b>d</b>). Parallel/common dotted lines were fitted with the linear regression model with/without irrigation as groups, including well-watered (W) and water-stressed (S). Data are means of replicate (Exp1_SD: n = 9, Expt 2_FD: n = 10).</p>
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16 pages, 2421 KiB  
Article
Effect of Warming on Soil Fungal Community Along Altitude Gradients in a Subalpine Meadow
by Jing Yin, Dandan Yuan, Jing Lu, He Li, Shuzheng Luo, Jianhua Zhang and Xingjia Xiang
Microorganisms 2024, 12(12), 2527; https://doi.org/10.3390/microorganisms12122527 - 7 Dec 2024
Viewed by 471
Abstract
The subalpine grassland ecosystem is sensitive to climatic changes. Previous studies investigated the effects of warming on grassland ecosystems at a single altitude, with little information about the response of subalpine meadows to warming along altitude gradients. This study aimed to evaluate the [...] Read more.
The subalpine grassland ecosystem is sensitive to climatic changes. Previous studies investigated the effects of warming on grassland ecosystems at a single altitude, with little information about the response of subalpine meadows to warming along altitude gradients. This study aimed to evaluate the effects of warming on aboveground grass, belowground soil properties, and fungal community along altitude gradients in the subalpine meadow of Mount Wutai using the high-throughput sequencing method. Warming reduced the restriction of low temperatures on the growth of subalpine grass, resulting in increasing grass biomass, community height, and coverage. More grass biomass led to higher soil organic carbon resources, which primarily affected fungal community composition following warming. Warming might induce more stochastic processes of fungal community assembly, increasing fungal diversity at low altitudes. In contrast, warming triggered more deterministic processes to decrease fungal diversity at medium and high altitudes. Warming might improve the efficiency of soil nutrient cycling and organic matter turnover by increasing the relative abundance of soil saprotrophs and improving fungal network connectivity. The relative abundance of certain grass pathogens significantly increased following warming, thereby posing potential risks to the sustainability and stability of subalpine meadow ecosystems. Overall, this study comprehensively evaluated the response of the subalpine meadow ecosystems to warming along altitude gradients, clarifying that warming changes soil fungal community composition at different altitudes. The long-term monitoring of pathogen-related shifts should be conducted in subalpine meadow ecosystem following warming. This study provided significant scientific insights into the impact of future climatic changes on subalpine ecosystems. Full article
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<p>Effects of warming on aboveground grass diversity (<b>A</b>) and biomass (<b>B</b>) along altitude gradients. Letters represent significant differences from paired-samples <span class="html-italic">t</span>-test analysis. CK: control; W: warming. ns: <span class="html-italic">p</span> &gt; 0.05; **: <span class="html-italic">p</span> &lt; 0.01; ***: <span class="html-italic">p</span> &lt; 0.001. Low altitude (2600 masl), medium altitude (2800 masl), medium-high altitude (2900 masl), and high altitude (3000 masl).</p>
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<p>Effect of warming on soil fungal alpha-diversity along altitude gradients. (<b>A</b>) ASV richness; (<b>B</b>) Shannon index. Letters represent significant differences from paired-samples <span class="html-italic">t</span>-test analysis. *: <span class="html-italic">p</span> &lt; 0.05; **: <span class="html-italic">p</span> &lt; 0.01. ASV: Amplicon Sequence Variation. CK: control; W: warming. Low altitude (2600 masl), medium altitude (2800 masl), medium-high altitude (2900 masl), and high altitude (3000 masl).</p>
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<p>Fungal community composition indicated by non-metric multi-dimensional scaling (NMDS) and permutational MANOVA (ADONIS) at 2600 masl (<b>A</b>), 2800 masl (<b>B</b>), 2900 masl (<b>C</b>), 3000 masl (<b>D</b>), non-warming groups (<b>E</b>) and warming groups (<b>F</b>). CK: control; W: warming. Low altitude (2600 masl), medium altitude (2800 masl), medium-high altitude (2900 masl), and high altitude (3000 masl). **: <span class="html-italic">p</span> &lt; 0.01; ***: <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>The diversity (<b>A</b>) and relative abundance (<b>B</b>) of grass pathogens along altitude gradients. Letters represent significant differences from paired-samples <span class="html-italic">t</span>-test analysis. *: <span class="html-italic">p</span> &lt; 0.05; **: <span class="html-italic">p</span> &lt; 0.01; ***: <span class="html-italic">p</span> &lt; 0.001. CK: control; W: warming. Low altitude (2600 masl), medium altitude (2800 masl), medium-high altitude (2900 masl), and high altitude (3000 masl).</p>
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<p>The fungal community assembly processes evaluated by the null deviation value (NDV) along altitude gradients. Letters represent significant differences from paired-samples <span class="html-italic">t</span>-test analysis. CK: control; W: warming. Low altitude (2600 masl), medium altitude (2800 masl), medium-high altitude (2900 masl), and high altitude (3000 masl).</p>
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22 pages, 9868 KiB  
Article
Re-Estimating GEDI Ground Elevation Using Deep Learning: Impacts on Canopy Height and Aboveground Biomass
by Rei Mitsuhashi, Yoshito Sawada, Ken Tsutsui, Hidetake Hirayama, Tadashi Imai, Taishi Sumita, Koji Kajiwara and Yoshiaki Honda
Remote Sens. 2024, 16(23), 4597; https://doi.org/10.3390/rs16234597 - 7 Dec 2024
Viewed by 540
Abstract
This paper presents a method to improve ground elevation estimates through waveform analysis from the Global Ecosystem Dynamics Investigation (GEDI) and examines its impact on canopy height and aboveground biomass (AGB) estimation. The method uses a deep learning model to estimate ground elevation [...] Read more.
This paper presents a method to improve ground elevation estimates through waveform analysis from the Global Ecosystem Dynamics Investigation (GEDI) and examines its impact on canopy height and aboveground biomass (AGB) estimation. The method uses a deep learning model to estimate ground elevation from the GEDI waveform. Geographic transferability was demonstrated by recalculating canopy height and AGB estimation accuracy using the improved ground elevation without changing established GEDI formulas for relative height (RH) and AGB. The study covers four regions in Japan and South America, from subarctic to tropical zones, integrating GEDI waveform data with airborne laser scan (ALS) data. Transfer learning was explored to enhance accuracy in regions not used for training. Ground elevation estimates using deep learning showed an RMSE improvement of over 3 m compared to the conventional GEDI L2A product, with generalization performance. Applying transfer learning and retraining with additional data further improved the estimation accuracy, even with limited datasets. The findings suggest that improving ground elevation estimates enhances canopy height and AGB accuracy, maximizing GEDI’s global AGB estimation algorithms. Optimizing models for each region could further enhance accuracy. The broader application of this method may improve global carbon cycle understanding and climate models. Full article
(This article belongs to the Section Forest Remote Sensing)
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<p>(<b>a</b>) GEDI-observed waveform (GEDI L1B) and (<b>b</b>) calculated relative height (RH) from GEDI L1B, an explanatory variable for AGB (GEDI L2A). The ground elevation estimation of GEDI L2A (<span class="html-italic">elev_lowestmode</span>) and actual elevation are shown for both.</p>
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<p>Study sites in Japan. (<b>a</b>) Geospatial location and Köppen–Geiger climate classification of Area 1 to Area 3 in Japan. <span class="html-italic">Cfa</span> is humid subtropical climate, <span class="html-italic">Cfb</span> is oceanic climate, <span class="html-italic">Dfa</span> is hot-summer humid continental climate, <span class="html-italic">Dfb</span> is warm-summer humid continental climate, and <span class="html-italic">Dfc</span> is subarctic climate. (<b>b</b>) GEDI footprint at ALS observation sites in Area 1 (Shizuoka: mostly <span class="html-italic">Cfa</span> warm oceanic climate, wide range of elevations and steep terrain). (<b>c</b>) GEDI footprint at ALS observation sites and AGB calculation site in Area 2 (Fukuoka: similar climate with Area 1, planted needleleaf forest). (<b>d</b>) GEDI footprint at ALS observation sites and AGB calculation site in Area 3 (Tsubetsu: mostly <span class="html-italic">Dfc</span> subarctic climate).</p>
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<p>Study site in South America (Area 4: tropical climate). GEDI footprint at ALS observation sites and AGB calculation site.</p>
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<p>Evaluation flow.</p>
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<p>Comparison of ground bins corresponding to ALS-derived ground within the GEDI footprint and the results of ground estimations from waveforms under various conditions. The dashed line in the figure represents the reference line where the data should overlap when the error is zero.</p>
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<p>Relationship between <span class="html-italic">ground_bin SNR</span> and ground elevation estimation accuracy (<b>upper</b>), slope calculated with ALS, and ground elevation estimation accuracy (<b>lower</b>).</p>
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<p>Relationship between the amount of data used for transfer learning in each area and ground elevation estimation accuracy.</p>
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<p>Comparison between RH98 from simulation waveforms generated from ALS with corrected coordinates and RH98 derived from GEDI waveforms under various conditions. The dashed line in the figure represents the reference line where the data should overlap when the error is zero.</p>
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<p>Relationship between <span class="html-italic">ground_bin SNR</span> and RH98 from simulation waveforms generated from ALS estimation accuracy (<b>upper</b>), slope calculated with ALS, and RH98 from simulation waveforms generated from ALS estimation accuracy (<b>lower</b>).</p>
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<p>Comparison of RH98 calculated from GEDI observation waveforms using ground elevation derived from ALS with RH98 from simulation waveforms. The dashed line in the figure represents the reference line where the data should overlap when the error is zero.</p>
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<p>Comparison of aboveground biomass (AGB) derived from ALS within the GEDI footprint and AGB estimated under various conditions. The dashed line in the figure represents the reference line where the data should overlap when the error is zero.</p>
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<p>Relationship between <span class="html-italic">ground_bin SNR</span> and AGB estimation accuracy (<b>upper</b>), slope calculated with ALS, and AGB estimation accuracy (<b>lower</b>).</p>
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<p>Comparison of AGB estimated from GEDI observation waveforms using ground elevation derived from ALS with AGB derived from ALS and local measurements. The dashed line in the figure represents the reference line where the data should overlap when the error is zero. (<b>a</b>) RH metrics for estimating AGB recalculated using ground elevation derived from ALS. (<b>b</b>) The estimation formula will be recalculated after adjusting for local land cover.</p>
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36 pages, 41599 KiB  
Article
A Large-Scale Inter-Comparison and Evaluation of Spatial Feature Engineering Strategies for Forest Aboveground Biomass Estimation Using Landsat Satellite Imagery
by John B. Kilbride and Robert E. Kennedy
Remote Sens. 2024, 16(23), 4586; https://doi.org/10.3390/rs16234586 - 6 Dec 2024
Viewed by 485
Abstract
Aboveground biomass (AGB) estimates derived from Landsat’s spectral bands are limited by spectral saturation when AGB densities exceed 150–300 Mg ha1. Statistical features that characterize image texture have been proposed as a means to alleviate spectral saturation. However, apart from [...] Read more.
Aboveground biomass (AGB) estimates derived from Landsat’s spectral bands are limited by spectral saturation when AGB densities exceed 150–300 Mg ha1. Statistical features that characterize image texture have been proposed as a means to alleviate spectral saturation. However, apart from Gray Level Co-occurrence Matrix (GLCM) statistics, many spatial feature engineering techniques (e.g., morphological operations or edge detectors) have not been evaluated in the context of forest AGB estimation. Moreover, many prior investigations have been constrained by limited geographic domains and sample sizes. We utilize 176 lidar-derived AGB maps covering ∼9.3 million ha of forests in the Pacific Northwest of the United States to construct an expansive AGB modeling dataset that spans numerous biophysical gradients and contains AGB densities exceeding 1000 Mg ha1. We conduct a large-scale inter-comparison of multiple spatial feature engineering techniques, including GLCMs, edge detectors, morphological operations, spatial buffers, neighborhood vectorization, and neighborhood similarity features. Our numerical experiments indicate that statistical features derived from GLCMs and spatial buffers yield the greatest improvement in AGB model performance out of the spatial feature engineering strategies considered. Including spatial features in Random Forest AGB models reduces the root mean squared error (RMSE) by 9.97 Mg ha1. We contextualize this improvement model performance by comparing to AGB models developed with multi-temporal features derived from the LandTrendr and Continuous Change Detection and Classification algorithms. The inclusion of temporal features reduces the model RMSE by 18.41 Mg ha1. When spatial and temporal features are both included in the model’s feature set, the RMSE decreases by 21.71 Mg ha1. We conclude that spatial feature engineering strategies can yield nominal gains in model performance. However, this improvement came at the cost of increased model prediction bias. Full article
(This article belongs to the Section Biogeosciences Remote Sensing)
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<p>The perimeters of the lidar AGB maps that were used as reference data in this analysis. The average forest AGB (Mg <math display="inline"><semantics> <mrow> <msup> <mi>ha</mi> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> </mrow> </semantics></math>) in each perimeter is depicted.</p>
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<p>An illustration of the sampling and data partitioning scheme used to generate the modeling dataset. A 500 m buffer was placed around test set locations to exclude samples from the training and development. This mitigates the impact of of spatial autocorrelation on our numerical experiments. Plots are superimposed over Landsat imagery (shortwave infrared-2, near-infrared, red reflectance; <b>left panel</b>) and true color National Agricultural Imagery Program 1 m imagery (<b>right panel</b>).</p>
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<p>An overview of the image processing and feature engineering workflow used in this analysis.</p>
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<p>RMSE distributions for the RF models developed in experiment 1.</p>
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<p>Predicted vs. observed AGB values from the second experiment comparing the AGB predictions generated by Random Forest models over the testing set. Models were produced using (<b>A</b>) the baseline features, (<b>B</b>) the baseline and spatial features, (<b>C</b>) the baseline and temporal features, (<b>D</b>) the baseline, spatial, and temporal features. The relationships are summarized using an ordinary least square regression curve (red line). The black dashed line is the one-to-one curve.</p>
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<p>The location of the four 15 <math display="inline"><semantics> <mrow> <msup> <mi>km</mi> <mn>2</mn> </msup> </mrow> </semantics></math> subsets (red squares) that were selected to visualize the outputs from the AGB models developed in experiment 2. The subsets are located in (A) the Coast Range in Oregon, (B) Eastern Oregon, (C) North Central Washington, and (D) Central Idaho.</p>
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<p>The reference lidar AGB map and the spatial residuals from each of the four models applied to a 15 <math display="inline"><semantics> <mrow> <msup> <mi>km</mi> <mn>2</mn> </msup> </mrow> </semantics></math> area in the Oregon Coast Range. Red colors indicate that the model overestimated the lidar AGB density. Blue indicates that the model underestimated the lidar AGB density.</p>
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<p>The reference lidar AGB map and the spatial residuals from each of the four models applied to a 15 <math display="inline"><semantics> <mrow> <msup> <mi>km</mi> <mn>2</mn> </msup> </mrow> </semantics></math> area in Eastern Oregon. Red colors indicate that the model overestimated the lidar AGB density. Blue indicates that the model underestimated the lidar AGB density.</p>
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<p>The reference lidar AGB map and the spatial residuals from each of the four models applied to a 15 <math display="inline"><semantics> <mrow> <msup> <mi>km</mi> <mn>2</mn> </msup> </mrow> </semantics></math> area in Central Idaho. Red colors indicate that the model overestimated the lidar AGB density. Blue indicates that the model underestimated the lidar AGB density.</p>
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<p>The reference lidar AGB map and the spatial residuals from each of the four models applied to a 15 <math display="inline"><semantics> <mrow> <msup> <mi>km</mi> <mn>2</mn> </msup> </mrow> </semantics></math> area in North Central Washington. Red colors indicate the model overestimated the lidar AGB density. Blue indicates the model underestimated the the lidar AGB density.</p>
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