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20 pages, 9291 KiB  
Article
Development Using Bioluminescence Imaging of a Recombinant Anguillid Herpesvirus 1 Vaccine Candidate Associated with Normal Replication In Vitro but Abortive Infection In Vivo
by Haiyan Zhang, Arun Sridhar, Natacha Delrez, Bo He, Sophie Fourny, Yuan Gao, Owen Donohoe and Alain F. C. Vanderplasschen
Vaccines 2024, 12(12), 1423; https://doi.org/10.3390/vaccines12121423 - 17 Dec 2024
Viewed by 863
Abstract
Background/Objectives: Anguillid herpesvirus 1 (AngHV-1) (recently renamed Cyvirus anguillidallo 1) is the etiologic agent of a lethal disease that affects several eel species. It is thought to be one of the main infectious agents causing a population decline in wild eels and economic [...] Read more.
Background/Objectives: Anguillid herpesvirus 1 (AngHV-1) (recently renamed Cyvirus anguillidallo 1) is the etiologic agent of a lethal disease that affects several eel species. It is thought to be one of the main infectious agents causing a population decline in wild eels and economic loss within the eel aquaculture sector. To date, no vaccines are available against AngHV-1. Recently, we developed a safe and efficacious live attenuated recombinant vaccine against Cyprinid herpesvirus 3 (CyHV-3). This CyHV-3 recombinant vaccine encodes a deletion of ORF57. Orthologues of CyHV-3 ORF57 exist in Cyprinid herpesvirus 2 (CyHV-2, ORF57) and AngHV-1 (ORF35). Methods: In the present study, using recombinant strains and bioluminescent in vivo imaging, we investigated the effect of AngHV-1 ORF35 deletion on virus replication in vitro, virulence in vivo, and the potential of an AngHV-1 ORF35-deleted recombinant as a vaccine candidate for the mass vaccination of eels by immersion. With this goal in mind, we produced ORF35-deleted recombinants using two parental strains: a UK strain and a recombinant derived from the former strain by insertion of a Luciferase–GFP reporter cassette into a non-coding intergenic region. Results: Analyses of ORF35-deleted recombinants led to the following observations: (i) AngHV-1 ORF35 is not essential for viral growth in cell culture, and its deletion does not affect the production of extracellular virions despite reducing the size of viral plaque. (ii) In contrast to what has been observed for CyHV-3 ORF57 and CyHV-2 ORF57, in vivo bioluminescent analyses revealed that AngHV-1 ORF35 is an essential virulence factor and that its deletion led to abortive infection in vivo. (iii) Inoculation of the AngHV-1 ORF35-deleted recombinant by immersion induced a protective immune response against a wild-type challenge. This protection was shown to be dose-dependent and to rely on the infectivity of AngHV-1 ORF35-deleted virions. Conclusions: This study suggests that the AngHV-1 ORF35 protein has singular properties compared to its orthologues encoded by CyHV-2 and CyHV-3. It also supports the potential of AngHV-1 ORF35-deleted recombinants for the mass vaccination of eels by immersion. Full article
(This article belongs to the Special Issue Animal Herpesviruses)
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Graphical abstract

Graphical abstract
Full article ">Figure 1
<p>Schematic representation of the strategy used to produce AngHV-1 recombinants by homologous directed recombination (HDR). (<b>A</b>) Flowchart of the production of the UK Luc and ORF35 Del recombinant strains by HDR in eukaryotic cells. (<b>B</b>) Genotype of the UK parental strain and derived recombinant strains for the ORF32–ORF33 intergenic region and the ORF35 locus. WT, wild-type; Luc, inserted LucGFP cassette; Del, deleted. (<b>C</b>) A schematic representation of the genome structure of UK Luc. The genome of AngHV-1 flanked by two terminal repeats (LTR and RTR) and the intergenic ORF32–ORF33 genome region are shown at the top. (<b>D</b>) Schematic representation of the genome structure of the UK ORF35 Del recombinant. The genome of AngHV-1 flanked by two terminal repeats (LTR and RTR) and the ORF35 genome region are shown at the top. In panels (<b>C</b>,<b>D</b>), SacI restriction sites and predicted restriction fragments (in kb) are shown. Coordinates are those of the AngHV-1 reference strain available in GenBank (accession number: MW580855.1).</p>
Full article ">Figure 2
<p>Characterization of AngHV-1 recombinant strains. (<b>A</b>) Transcriptional analysis of genes ORF32, ORF33, ORF34, ORF35, ORF36, and ORF55 expressed by the indicated strains of AngHV-1. ORF55 (AngHV-1 DNA polymerase) expression was used as a control. Marker sizes (MSs) in base pairs (bps) are indicated on the left. The left part and the right part of the figure represent the results of the PCR performed on cDNA and RNA, respectively. (<b>B</b>) Expression of reporter genes. EK-1 cells grown in 12-well plates were infected with the indicated strains, then overlaid with a medium containing CMC. At 4 dpi, infected cells were analyzed for the expression of bioluminescence and epifluorescence. The Luc signal was detected using the IVIS system (left frame). The reporters (copGFP and mCherry) and immunofluorescent staining (anti-AngHV-1) were detected by epifluorescent microscopy. Plaques of UK and UK ORF35 Del were revealed by indirect immunofluorescent staining (anti-AngHV-1) (right frame). (<b>C</b>) The replication kinetics and (<b>D</b>) viral plaque sizes of the ORF35-deleted strains were compared with those of the parental UK and UK Luc strains. (<b>E</b>) Luc expression of AngHV-1 recombinant strains (UK Luc and UK Luc ORF35 Del). The replication kinetic data represent the mean ± SEM of triplicate measurements. The data on the plaque area are the mean ± SEM of twenty measurements. The data on Luc expression are the mean ± SEM of triplicate measurements. The horizontal dashed line in panel <b>E</b> shows the mean + 3 SD of the data obtained for control non-infected cultures. Results of statistical comparisons between ORF35 Del strains and parental strains are indicated as follows: ns, no significant differences; *, <span class="html-italic">p</span> &lt; 0.05.</p>
Full article ">Figure 3
<p>Effect of ORF35 deletion on AngHV-1 replication in vivo. (<b>A</b>) Flowchart of the experiment. At the time of inoculation, yellow eels (12.06 ± 2.72 g, mean ± SD) were mock-infected or infected with the indicated strains using different routes: IP injection of 200,000 pfu/eel or immersion in water containing 4000 pfu/mL or intradermal inoculation of 200,000 pfu/eel. At the indicated times post-infection, eels (<span class="html-italic">n</span> = 6, consisting of two eels from triplicate tanks) were imaged using an IVIS. (<b>B</b>) The effects of AngHV-1 infection routes: IP injection, immersion, and intradermal inoculation are presented in the left column, middle column, and right column, respectively. Average radiance (individual values, mean ± SEM) measured on the entire body surface of the fish, i.e., skin (individual values represent the mean values obtained for the left and right sides of each fish), gills (individual values represent the mean values obtained for the left and right gills), brain, heart, and gut-liver, were analyzed by IVIS (<span class="html-italic">n</span> = 6 per timepoint). The dashed line represents the threshold of positivity, which is the mean + 3 SD of the values obtained for the mock-infected fish (data not presented). The number of positive fish among the six analyzed fish is represented by bars (right axis). The average emitted radiances (<span class="html-italic">p</span>(<span class="html-italic">rad</span>)) of UK Luc were compared with UK Luc ORF35 Del using unpaired <span class="html-italic">t</span>-test (two-tail, Gaussian distribution) or Wilcoxon test (non-Gaussian distribution). The number of positive fish per group was compared between two strains using the Fisher–Pitman permutation test (<span class="html-italic">p</span>(<span class="html-italic">no</span>)). <span class="html-italic">p</span> values are represented as follows: ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001. (<b>C</b>) Representative images of IVIS data (skin, gills, and brain) are presented. Eels with the closest scores to the mean of each infection route were selected for image illustration.</p>
Full article ">Figure 3 Cont.
<p>Effect of ORF35 deletion on AngHV-1 replication in vivo. (<b>A</b>) Flowchart of the experiment. At the time of inoculation, yellow eels (12.06 ± 2.72 g, mean ± SD) were mock-infected or infected with the indicated strains using different routes: IP injection of 200,000 pfu/eel or immersion in water containing 4000 pfu/mL or intradermal inoculation of 200,000 pfu/eel. At the indicated times post-infection, eels (<span class="html-italic">n</span> = 6, consisting of two eels from triplicate tanks) were imaged using an IVIS. (<b>B</b>) The effects of AngHV-1 infection routes: IP injection, immersion, and intradermal inoculation are presented in the left column, middle column, and right column, respectively. Average radiance (individual values, mean ± SEM) measured on the entire body surface of the fish, i.e., skin (individual values represent the mean values obtained for the left and right sides of each fish), gills (individual values represent the mean values obtained for the left and right gills), brain, heart, and gut-liver, were analyzed by IVIS (<span class="html-italic">n</span> = 6 per timepoint). The dashed line represents the threshold of positivity, which is the mean + 3 SD of the values obtained for the mock-infected fish (data not presented). The number of positive fish among the six analyzed fish is represented by bars (right axis). The average emitted radiances (<span class="html-italic">p</span>(<span class="html-italic">rad</span>)) of UK Luc were compared with UK Luc ORF35 Del using unpaired <span class="html-italic">t</span>-test (two-tail, Gaussian distribution) or Wilcoxon test (non-Gaussian distribution). The number of positive fish per group was compared between two strains using the Fisher–Pitman permutation test (<span class="html-italic">p</span>(<span class="html-italic">no</span>)). <span class="html-italic">p</span> values are represented as follows: ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001. (<b>C</b>) Representative images of IVIS data (skin, gills, and brain) are presented. Eels with the closest scores to the mean of each infection route were selected for image illustration.</p>
Full article ">Figure 4
<p>Dose-protection effect conferred by UK ORF35 Del in vivo. (<b>A</b>) Flowchart of the experiment. At the time of primary inoculation, yellow eels (28.52 ± 7.30 g, mean ± SD) were mock-infected or infected for 2 h by immersion in water containing the indicated doses of UK ORF35 Del or 100,000 pfu/mL of UK ORF35 Del strain treated by psoralen/UV to inactivate virus infectivity. At 36 days post-primary inoculation, eels were infected for 2 h by immersion in water containing 4000 pfu/mL of UK Luc expressing luciferase as a reporter. At the indicated times post-secondary inoculation, eels (<span class="html-italic">n</span> = 6, consisting of two eels from triplicate tanks) were imaged using IVIS. (<b>B</b>) Average radiance (individual values, mean ± SEM) measured on the entire body surface of fish, i.e., skin (individual values represent the mean values obtained for the left and right sides of each fish), gills (individual values represent the mean values obtained for the left and right gills), brain, heart, and gut–liver, were analyzed by IVIS (<span class="html-italic">n</span> = 6 per timepoint). The average radiance (<span class="html-italic">p</span>(<span class="html-italic">rad</span>)) of each group was compared with the “primary mock-infected group” using a non-parametric Kruskal–Wallis test followed by multiple comparisons with the two-stage step-up method of Benjamini, Krieger, and Yekutieli. Throughout this panel, the data obtained for every individual eel (within each group) are represented by the same symbol to allow for a correlation of the data obtained for the different organs at a specific dpi. The dashed line represents the threshold of positivity, which was calculated by the mean + 3 SD of the values obtained for the mock fish. The number of positive fish among the six analyzed fish is represented by bars (right axis). The positive fish (<span class="html-italic">p</span>(<span class="html-italic">no</span>)) from each group was compared with the primary mock-infected group using the Fisher–Pitman permutation test. <span class="html-italic">p</span> values are represented as follows: ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01. (<b>C</b>) Representative images of IVIS data (skin, gills, and brain) are presented in the lower panel. Eels with the closest scores to the mean of each group (mock; UK ORF35 Del, 100,000 pfu/mL; psoralen/UV-inactivated UK ORF35 Del, 100,000 pfu/mL; and mock-infected with UK Luc) were selected for image illustration.</p>
Full article ">Figure 4 Cont.
<p>Dose-protection effect conferred by UK ORF35 Del in vivo. (<b>A</b>) Flowchart of the experiment. At the time of primary inoculation, yellow eels (28.52 ± 7.30 g, mean ± SD) were mock-infected or infected for 2 h by immersion in water containing the indicated doses of UK ORF35 Del or 100,000 pfu/mL of UK ORF35 Del strain treated by psoralen/UV to inactivate virus infectivity. At 36 days post-primary inoculation, eels were infected for 2 h by immersion in water containing 4000 pfu/mL of UK Luc expressing luciferase as a reporter. At the indicated times post-secondary inoculation, eels (<span class="html-italic">n</span> = 6, consisting of two eels from triplicate tanks) were imaged using IVIS. (<b>B</b>) Average radiance (individual values, mean ± SEM) measured on the entire body surface of fish, i.e., skin (individual values represent the mean values obtained for the left and right sides of each fish), gills (individual values represent the mean values obtained for the left and right gills), brain, heart, and gut–liver, were analyzed by IVIS (<span class="html-italic">n</span> = 6 per timepoint). The average radiance (<span class="html-italic">p</span>(<span class="html-italic">rad</span>)) of each group was compared with the “primary mock-infected group” using a non-parametric Kruskal–Wallis test followed by multiple comparisons with the two-stage step-up method of Benjamini, Krieger, and Yekutieli. Throughout this panel, the data obtained for every individual eel (within each group) are represented by the same symbol to allow for a correlation of the data obtained for the different organs at a specific dpi. The dashed line represents the threshold of positivity, which was calculated by the mean + 3 SD of the values obtained for the mock fish. The number of positive fish among the six analyzed fish is represented by bars (right axis). The positive fish (<span class="html-italic">p</span>(<span class="html-italic">no</span>)) from each group was compared with the primary mock-infected group using the Fisher–Pitman permutation test. <span class="html-italic">p</span> values are represented as follows: ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01. (<b>C</b>) Representative images of IVIS data (skin, gills, and brain) are presented in the lower panel. Eels with the closest scores to the mean of each group (mock; UK ORF35 Del, 100,000 pfu/mL; psoralen/UV-inactivated UK ORF35 Del, 100,000 pfu/mL; and mock-infected with UK Luc) were selected for image illustration.</p>
Full article ">Figure 4 Cont.
<p>Dose-protection effect conferred by UK ORF35 Del in vivo. (<b>A</b>) Flowchart of the experiment. At the time of primary inoculation, yellow eels (28.52 ± 7.30 g, mean ± SD) were mock-infected or infected for 2 h by immersion in water containing the indicated doses of UK ORF35 Del or 100,000 pfu/mL of UK ORF35 Del strain treated by psoralen/UV to inactivate virus infectivity. At 36 days post-primary inoculation, eels were infected for 2 h by immersion in water containing 4000 pfu/mL of UK Luc expressing luciferase as a reporter. At the indicated times post-secondary inoculation, eels (<span class="html-italic">n</span> = 6, consisting of two eels from triplicate tanks) were imaged using IVIS. (<b>B</b>) Average radiance (individual values, mean ± SEM) measured on the entire body surface of fish, i.e., skin (individual values represent the mean values obtained for the left and right sides of each fish), gills (individual values represent the mean values obtained for the left and right gills), brain, heart, and gut–liver, were analyzed by IVIS (<span class="html-italic">n</span> = 6 per timepoint). The average radiance (<span class="html-italic">p</span>(<span class="html-italic">rad</span>)) of each group was compared with the “primary mock-infected group” using a non-parametric Kruskal–Wallis test followed by multiple comparisons with the two-stage step-up method of Benjamini, Krieger, and Yekutieli. Throughout this panel, the data obtained for every individual eel (within each group) are represented by the same symbol to allow for a correlation of the data obtained for the different organs at a specific dpi. The dashed line represents the threshold of positivity, which was calculated by the mean + 3 SD of the values obtained for the mock fish. The number of positive fish among the six analyzed fish is represented by bars (right axis). The positive fish (<span class="html-italic">p</span>(<span class="html-italic">no</span>)) from each group was compared with the primary mock-infected group using the Fisher–Pitman permutation test. <span class="html-italic">p</span> values are represented as follows: ns, not significant; *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01. (<b>C</b>) Representative images of IVIS data (skin, gills, and brain) are presented in the lower panel. Eels with the closest scores to the mean of each group (mock; UK ORF35 Del, 100,000 pfu/mL; psoralen/UV-inactivated UK ORF35 Del, 100,000 pfu/mL; and mock-infected with UK Luc) were selected for image illustration.</p>
Full article ">
30 pages, 17669 KiB  
Article
In Vivo Imaging Sheds Light on the Susceptibility and Permissivity of Carassius auratus to Cyprinid Herpesvirus 2 According to Developmental Stage
by Bo He, Arun Sridhar, Cindy Streiff, Caroline Deketelaere, Haiyan Zhang, Yuan Gao, Yunlong Hu, Sebastien Pirotte, Natacha Delrez, Andrew J. Davison, Owen Donohoe and Alain F. C. Vanderplasschen
Viruses 2023, 15(8), 1746; https://doi.org/10.3390/v15081746 - 15 Aug 2023
Cited by 7 | Viewed by 2147 | Correction
Abstract
Cyprinid herpesvirus 2 (CyHV-2) is a virus that causes mass mortality in economically important Carassius spp. However, there have been no comprehensive studies into host susceptibility or permissivity with respect to developmental stage, and the major portal of viral entry into the host [...] Read more.
Cyprinid herpesvirus 2 (CyHV-2) is a virus that causes mass mortality in economically important Carassius spp. However, there have been no comprehensive studies into host susceptibility or permissivity with respect to developmental stage, and the major portal of viral entry into the host is still unclear. To help bridge these knowledge gaps, we developed the first ever recombinant strain of CyHV-2 expressing bioluminescent and fluorescent reporter genes. Infection of Carassius auratus hosts with this recombinant by immersion facilitated the exploitation of various in vivo imaging techniques to establish the spatiotemporal aspects of CyHV-2 replication at larval, juvenile, and adult developmental stages. While less susceptible than later developmental stages, larvae were most permissive to CyHV-2 replication, leading to rapid systemic infection and high mortality. Permissivity to CyHV-2 decreased with advancing development, with adults being the least permissive and, thus, also exhibiting the least mortality. Across all developmental stages, the skin was the most susceptible and permissive organ to infection at the earliest sampling points post-infection, indicating that it represents the major portal of entry into these hosts. Collectively these findings provide important fundamental insights into CyHV-2 pathogenesis and epidemiology in Carassius auratus with high relevance to other related economically important virus-host models. Full article
(This article belongs to the Section Animal Viruses)
Show Figures

Figure 1

Figure 1
<p><b>Production of the CyHV-2 LucGFP recombinant strain.</b> (<b>A</b>) Schematic representation of the genome structure of the recombinant produced. The genome of the CyHV-2 YC-01 strain, flanked by two terminal repeats (LTR and RTR), is shown at the top. A bicistronic reporter expression cassette was inserted into the non-coding ORF64-ORF66 intergenic region. SacI restriction sites and genome coordinates are marked. (<b>B</b>) Genomic analysis of CyHV-2 strains. The genomes of the WT and LucGFP strains were analyzed by SacI RFLP analysis. The white arrowhead indicates the fragment (7.66 kb) of the WT strain genome containing the insertion site. The black arrowheads indicate two new fragments (5.1 and 6.7 kb) that were generated due to the insertion of the LucGFP cassette. The ladder indicates the approximate sizes of each fragment. (<b>C</b>) Transcriptional analysis of genes flanking the insertion site of the transgene. Using reverse transcriptase polymerase chain reaction (RT-PCR), transcription of ORF64 and ORF66 was compared between the LucGFP strain and WT strain during viral replication in vitro. Both ORF64 (546 bp) and ORF66 (610 bp) transcripts were detected in RNA from WT and LucGFP infected cells, indicating that flanking genes were not impacted by the reporter gene insertion. Importantly, the absence of a detectable product in the RT-negative controls (RNA, bottom row) indicated that results were not the result of residual genomic DNA contaminants. Marker sizes (MS) are indicated on the left. ORF79 (CyHV-2, DNA polymerase gene) was used as a loading control, as it is located in a distant part of the CyHV-2 genome and, thus, should not be impacted by the reporter gene insertion between ORF64 and ORF66.</p>
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<p><b>Phenotypic characterization of CyHV-2 strains.</b> (<b>A</b>) Expression of reporter genes. RyuF-2 cells grown in 6-well plates were infected with the indicated strains and then overlaid with medium containing CMC. At 4 dpi, infected cells were analyzed for bioluminescent and fluorescent signal from reporter genes. The Luc signal was detected using an IVIS system (<b>left</b> column, scale bar = 1 cm). The copGFP signal was detected by epifluorescence microscopy (<b>right</b> panels, scale bar = 500 μm). Viral plaques were revealed by indirect immunofluorescent staining. (<b>B</b>) Comparisons of viral growth in vitro. Viral growth assay (<b>top</b> panel). RyuF-2 cells were infected with the indicated strains and the log<sub>10</sub> value of the titer (pfu/mL) in the supernatant was determined at the indicated dpi. Data represent the mean ± SEM of triplicate measurements. Viral plaque assay (<b>lower</b> panel). RyuF-2 cells were infected with the indicated strains, and plaque areas were measured over time. Data represent the mean ± SEM of 20 individual plaques. No significant differences were detected between WT and LucGFP strains. (<b>C</b>) Comparison of virulence in vivo. The virulence of the indicated strains was tested in adult Shubunkin goldfish (triplicate groups each consisting of 20 subjects, average weight 3.5 ± 0.4 g, 8 months old). Fish were mock-infected or infected by IP injection with the indicated strains (10<sup>4</sup> pfu/g). The fish were examined daily for clinical signs of CyHV-2 disease, and fish reaching the endpoints were euthanized. No significant differences were detected between WT and LucGFP strains in the experiments described in (<b>B</b>,<b>C</b>).</p>
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<p><b>Susceptibility and permissivity of goldfish larvae to CyHV-2.</b> (<b>A</b>) Flowchart of the experiments performed to investigate the susceptibility and permissivity of goldfish larvae (4 dpf or 1 d post-hatching, average length = 5.2 ± 0.1 mm) to CyHV-2 after infection by immersion in water containing the virus. (<b>B</b>) Survival curves of larvae following infection with the indicated strain. On day zero, 3 independent replicates of larvae, each group consisting of 60 subjects, were infected by immersion in E3 media containing the virus. Fish were examined daily, and those reaching the endpoints were euthanized. The percentage survival is expressed according to dpi. The three left panels show the survival curves observed for replicates. The right panel shows the mean survival curves based on the three replicates. (<b>C</b>) <b>Top</b> panel: Quantitative measurements of CyHV-2 replication in goldfish larvae obtained by IVIS. On day zero, three independent replicates of larvae, each group consisting of 50 subjects, were infected by immersion in E3 media containing the virus (5 × 10<sup>5</sup> pfu/mL). At the indicated dpi, larvae (<span class="html-italic">n</span> = 30, i.e., 10 per replicate) were analyzed by IVIS. The average radiance (p/sec/cm<sup>2</sup>/sr) emitted by individual infected larvae corrected for the background of each image is represented by dots. For each time point, a group of mock-infected larvae was analyzed to define the threshold of positivity (dotted line), defined as the mean +3 SD. The number of positive larvae among 30 analyzed infected larvae is presented by grey bars. <b>Lower</b> panel: Representative images of analyzed larvae are presented in the lower part of the figure. Images are presented with a relative photon flux scale manually adapted to use the full dynamic range of the pseudo-color scale. Scale bar = 3 mm.</p>
Full article ">Figure 4
<p><b>Visualization of CyHV-2 infection in goldfish larvae using epifluorescence microscopy.</b> The timeline of this experiment has been described in <a href="#viruses-15-01746-f003" class="html-fig">Figure 3</a>A. Epifluorescence microscopy images representative of larvae mock-infected and infected with the LucGFP strain according to time post-infection. Scale bar = 1 mm.</p>
Full article ">Figure 5
<p><b>Visualization of CyHV-2 infection in goldfish larvae using confocal microscopy.</b> The timeline of this experiment has been described in <a href="#viruses-15-01746-f003" class="html-fig">Figure 3</a>A. The larvae were infected (LucGFP strain) or mock-infected by immersion in water containing the virus. At 1 dpi, fish were first observed by epifluorescence microscopy, and infected fish were identified based on the copGFP reporter signal (first row of panels, scale bar = 1 mm). Living skin epidermal cells on the outer body were then stained with DRAQ5. A series of Z-stacks were acquired using a confocal microscope in order to generate a 3D representation of the region of interest, with skin cells (DRAQ5-stained) in white and virally infected cells (copGFP expression) in green (second row of panel, scale bar = 300 µm). These data were used to generate three 2D optical sections in each sample (third row on panel), separated by a distance of 30 μm. These sections were denoted as a, b, and c for the mock-infected group, and d, e, and f for the LucGFP-infected group (each 0.662 μm in thickness). These optical sections are also displayed individually (three last rows, scale bar = 300 µm). Within the optical sections d, e, and f, it can be seen that the virally infected cells (copGFP green) only co-localize with skin epidermal cells (DRAQ5, white) and are indicated by red arrows. Conversely, no viral signal is detected in the mock-infected samples.</p>
Full article ">Figure 6
<p><b>Viral tropism of CyHV-2 in goldfish larvae.</b> The timeline of this experiment has been described in <a href="#viruses-15-01746-f003" class="html-fig">Figure 3</a>A. Mock-infected and infected larvae (LucGFP strain) were first observed by epifluorescence microscopy (Epifluorescence, scale bar = 1 mm) at the indicated dpi, then processed for IHC detection of copGFP. The white boxes with dotted outlines in epifluorescence images indicate the regions analyzed by IHC. The virus was detected by staining for copGFP, with positive staining indicated by brown coloration filling entire cells (red arrows). Scale bars in IHC images represent 100 µm for anterior and caudal regions, and 200 µm for the pericardial region.</p>
Full article ">Figure 7
<p><b>Susceptibility and permissivity of juvenile goldfish to CyHV-2 infection.</b> (<b>A</b>) Flowchart of the experiments performed to investigate the susceptibility and permissivity of juvenile goldfish (75 days post fertilization, average length = 2.3 ± 0.3 cm) to CyHV-2 after infection by immersion in water containing the virus. (<b>B</b>) Survival rates of juveniles following infection with the indicated strain. On day zero, 10 subjects were infected by immersion in water containing the virus. Fish were examined daily and fish reaching the endpoints were euthanized. The percentage of survival is expressed according to dpi. The three left panels show the survival curves observed, respectively, for Mock, WT, and LucGFP groups. The right panel shows the overlay of the three groups. No statistically significant difference was observed between the WT and LucGFP strains. (<b>C</b>) <b>Top</b> panel: Quantitative measurements of CyHV-2 replication in juvenile goldfish by IVIS. Juveniles (<span class="html-italic">n</span> = 30) were infected (LucGFP strain) or mock-infected by immersion in infectious water. At the indicated dpi, juveniles (<span class="html-italic">n</span> = 6 per group) were analyzed by IVIS in vivo (skin) and ex vivo (gut and gills). The average radiance (p/sec/cm<sup>2</sup>/sr) emitted by individual infected juvenile corrected for the background of each image is represented by dots. For each time point, a group of mock-infected juvenile fish was analyzed to define the threshold of positivity (dotted line), defined as the mean +3 SD. The number of positive subjects among six analyzed infected juveniles is presented by grey bars. <b>Lower</b> panel: Representative images of analyzed juveniles are presented in the lower part of the figure. Images are presented with a relative photon flux scale manually adapted to use the full dynamic range of the pseudo-color scale. Scale bar = 5 mm.</p>
Full article ">Figure 8
<p><b>Visualization of CyHV-2 infection in juvenile goldfish using epifluorescence microscopy.</b> The timeline of this experiment has been described in <a href="#viruses-15-01746-f007" class="html-fig">Figure 7</a>A. Epifluorescence microscopy images representative of juvenile fish mock-infected and infected with the LucGFP strain according to time post-infection. Typical infection foci observed in the eye and skin regions are indicated with red arrows. Scale bars related to pictures of eye, skin, and caudal fin represent 1 mm. Scale bars related to pictures of gills represent 400 µm.</p>
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<p><b>Susceptibility and permissivity of adult goldfish to CyHV-2 infection.</b> (<b>A</b>) Flowchart of the experiments performed to investigate the susceptibility and permissivity of adult goldfish (1.5 years old, average weight = 12 ± 3.7 g) to CyHV-2 after infection by immersion in water containing the virus. (<b>B</b>) Survival rates of adults following infection with the indicated strain. On day zero, three independent replicates of adult fish (<span class="html-italic">n</span> = 30) were infected by immersion in water containing the virus. Fish were observed for 30 days and fish reaching the endpoints were euthanized. The percentage of survival is expressed according to dpi. The three left panels show the survival curves observed for replicates. The right panel shows the mean survival curves based on three replicates. (<b>C</b>) Quantitative measurements of CyHV-2 replication in adult goldfish by IVIS. Fish were infected or mock-infected with the LucGFP strain by immersion in infectious water. At the indicated dpi, fish (<span class="html-italic">n</span> = 12 per group) were analyzed by IVIS in vivo (skin) and ex vivo (gut, gills, heart, spleen, and kidney). The average radiance (p/sec/cm<sup>2</sup>/sr) emitted by individual infected fish corrected for the background of each image is represented by dots. For each time point, a group of mock-infected fish was analyzed to define the threshold of positivity (dotted line), defined as the mean +3 SD. The number of positive fish among 12 analyzed infected fish is presented by grey bars.</p>
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<p><b>Illustration of CyHV-2 tropism detected by IVIS in adult fish.</b> This figure is related to the experiment described in <a href="#viruses-15-01746-f009" class="html-fig">Figure 9</a>C. Representative images of IVIS analysis are presented for skin and gills. Images are presented with a relative photon flux scale manually adapted in order to use the full dynamic range of the pseudo-color scale. Scale bars in panels related to skin and gills represent 2 and 1 cm, respectively.</p>
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<p><b>Visualization of CyHV-2 infection in adult goldfish using epifluorescence microscopy.</b> This figure is related to the experiment described in <a href="#viruses-15-01746-f009" class="html-fig">Figure 9</a>C. Epifluorescence microscopy images representative of adult fish mock-infected and infected with LucGFP strain according to time post-infection. Scale bar = 1 mm.</p>
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36 pages, 16874 KiB  
Article
Susceptibility and Permissivity of Zebrafish (Danio rerio) Larvae to Cypriniviruses
by Cindy Streiff, Bo He, Léa Morvan, Haiyan Zhang, Natacha Delrez, Mickael Fourrier, Isabelle Manfroid, Nicolás M. Suárez, Stéphane Betoulle, Andrew J. Davison, Owen Donohoe and Alain Vanderplasschen
Viruses 2023, 15(3), 768; https://doi.org/10.3390/v15030768 - 17 Mar 2023
Cited by 5 | Viewed by 3953
Abstract
The zebrafish (Danio rerio) represents an increasingly important model organism in virology. We evaluated its utility in the study of economically important viruses from the genus Cyprinivirus (anguillid herpesvirus 1, cyprinid herpesvirus 2 and cyprinid herpesvirus 3 (CyHV-3)). This revealed that [...] Read more.
The zebrafish (Danio rerio) represents an increasingly important model organism in virology. We evaluated its utility in the study of economically important viruses from the genus Cyprinivirus (anguillid herpesvirus 1, cyprinid herpesvirus 2 and cyprinid herpesvirus 3 (CyHV-3)). This revealed that zebrafish larvae were not susceptible to these viruses after immersion in contaminated water, but that infections could be established using artificial infection models in vitro (zebrafish cell lines) and in vivo (microinjection of larvae). However, infections were transient, with rapid viral clearance associated with apoptosis-like death of infected cells. Transcriptomic analysis of CyHV-3-infected larvae revealed upregulation of interferon-stimulated genes, in particular those encoding nucleic acid sensors, mediators of programmed cell death and related genes. It was notable that uncharacterized non-coding RNA genes and retrotransposons were also among those most upregulated. CRISPR/Cas9 knockout of the zebrafish gene encoding protein kinase R (PKR) and a related gene encoding a protein kinase containing Z-DNA binding domains (PKZ) had no impact on CyHV-3 clearance in larvae. Our study strongly supports the importance of innate immunity-virus interactions in the adaptation of cypriniviruses to their natural hosts. It also highlights the potential of the CyHV-3-zebrafish model, versus the CyHV-3-carp model, for study of these interactions. Full article
(This article belongs to the Special Issue Fish Virology)
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Figure 1
<p>Generation and verification of CRISPR-Cas9 <span class="html-italic">eif2ak2</span> (<span class="html-italic">pkr</span>) and <span class="html-italic">pkz</span> mutations in zebrafish (<b>a</b>) Structure of zebrafish <span class="html-italic">eif2ak2</span> (<span class="html-italic">pkr</span>) and <span class="html-italic">pkz</span> genes and proteins. The protein domains including double stranded RNA-binding domains (dsRB), Z-DNA/RNA binding domains (zα) and kinase domains are aligned to the corresponding exons. The CRISPR/Cas9 gene editing targets were exon 2 in zebrafish <span class="html-italic">eif2ak2</span> gene and exon 1 in zebrafish <span class="html-italic">pkz</span> gene; sgRNA target sequences are also displayed (orange, PAM lower case). The CRISPR/Cas9-induced changes in the WT <span class="html-italic">eif2ak2</span> gene (34-base insertion) to generate PKR-KO, and WT <span class="html-italic">pkz</span> gene (14-base deletion) to generate the PKZ-KO mutant strains are displayed. After the generation of the PKZ-KO mutant strain, the WT <span class="html-italic">eif2ak2</span> gene in this strain was also mutated, resulting in the PKR-PKZ-KO mutant strain (displayed below). The mutated <span class="html-italic">eif2ak2</span> gene in the PKR-PKZ-KO strain exhibits a different mutation (7-base deletion with 1-base insertion) relative to the mutated <span class="html-italic">eif2ak2</span> gene in PKR-KO mutant. Inserted and deleted sequences are highlighted in green (deleted sequences are represented by “-“). (<b>b</b>) Results from genotyping of homozygous WT, PKR-KO, PKZ-KO and PKR-PKZ-KO zebrafish groups. This involved PCR amplification of <span class="html-italic">eif2ak2</span> (<span class="html-italic">pkr</span>) and <span class="html-italic">pkz</span> genes, in each mutant group (left and right gel images, respectively, with expected sizes of WT alleles indicated). Each gel consists of the same layout: Lane 1: 1kb Molecular Marker, Lanes 2–9 each represent a DNA extracted from single whole larva, Lanes 2–3: WT Larvae, Lanes 4–5: PKR-KO mutants, Lanes 6–7 PKZ-KO mutants, Lanes 8–9 PKR-PKZ-KO mutants. Mutant <span class="html-italic">eif2ak2</span> (<span class="html-italic">pkr</span>) alleles were detected in PKR-KO and PKR-PKZ-KO larvae exhibiting 188-bp and 148-bp amplicons, respectively (left gel). The mutant <span class="html-italic">pkz</span> allele was detected in in PKZ-KO and PKR-PKZ-KO larvae, both exhibiting 151-bp amplicons (right gel). Higher quality figures for the whole manuscript are available in the PDF version.</p>
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<p>Infection of ZF4 cells by cypriniviruses. ZF4 cells were infected with the AngHV-1 Luc-copGFP, CyHV-2 Luc-copGFP and CyHV-3 EGFP recombinant strains. Infection progression was imaged by epifluorescence microscopy. Infected cells were identified based on green fluorescence expression at the indicated timepoints of infection. Scale bars = 100 µm.</p>
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<p>Quantification of CyHV-2 and CyHV-3-infected cells in ZF4 monolayer over time. This data was acquired via time-lapse fluorescent microscopy (IncuCyte). Cells were cultured in a 24-well plate and infected with CyHV-2 Luc-copGFP or CyHV-3 EGFP recombinants (1.2 × 10<sup>6</sup> PFU/mL for each recombinant). At 24 hpi, cells were imaged every 2 h for 11 days. Data represent the mean ± standard errors from three replicates/wells. Data from each replicate at each timepoint represent the sum of fluorescent cells observed in nine separate locations of each well.</p>
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<p>Kinetics of appearance and death of CyHV-2 and CyHV-3-infected cells before and after infection peak. The bars relate to the temporal pattern of appearance and disappearance of CyHV-2-infected or CyHV-3-infected cells (based on fluorescent reporter expression). The quantities are based on the total amount of observations made in 9 different locations in each well/replicate. The green and red curves show the total amount of infected cells up until the peak of infection (represented by the black vertical line) and after the peak, respectively. The values on top of the curves represent the average rate of appearance of infected cells per hour (green) and the average rate of death per hour (red). Analysing the rate of appearance/hour before the peak for CyHV-2 and CyHV-3 revealed no differences between the viruses.</p>
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<p>Survival kinetics for CyHV-2 and CyHV-3-infected cells displayed as Kaplan-Meier plots. CyHV-2 and CyHV-3-infected cells observed at 120 hpi were monitored until the end of the experiment. Cell death events and times were identified based on the disappearance of fluorescent signals (<a href="#app1-viruses-15-00768" class="html-app">Figure S2</a>). N = Number of cells followed.</p>
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<p>Cell death characteristics observed in CyHV-2 and CyHV-3 infections (<b>a</b>) Representative morphological observations among populations of infected cells (those exhibiting fluorescence) in the periods leading up to cell death (disappearance of fluorescence). Top panel: Morphological features consistent with apoptosis (cell shrinkage, membrane blebbing followed by the appearance of cell debris resembling apoptotic bodies, and progressive decrease of fluorescent signal). Bottom panel: Morphological features not consistent with apoptosis (cell swelling, followed by cell shrinkage, and absence of cell debris resembling apoptotic bodies prior to disappearance of fluorescent signal). Key examples of individual cells undergoing apoptosis-like and non-apoptosis-like death in each panel are highlighted by red circle and yellow arrows, respectively, which track the progression of morphology in a single cell with respect to time. Time postinfection (in days and hours) is indicated in images. Scale bars = 100 µm. (<b>b</b>) Percentage of infected cells exhibiting features of apoptosis-like or non-apoptosis-like cell death among those that died during the observation period (<b>c</b>) Mean survival time of infected cells undergoing cell death during the observation period according to the type of death observed. Data represents mean ± standard error from 3 replicates. **** <span class="html-italic">p</span> &lt; 0.0001; *** <span class="html-italic">p</span> &lt; 0.001; * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Susceptibility and permissivity of zebrafish larvae to infection with cypriniviruses after inoculation by microinjection (<b>a</b>) Epifluorescence microscopy images representative of larvae inoculated with CyHV-2 and CyHV-3 according to time postinfection (longitudinal observation of the same larvae over all timepoints) Scale bars = 200 µm. (<b>b</b>) Numbers of CyHV-2 and CyHV-3-infected larvae among groups inoculated by microinjection (n = 15). Data represents mean ± standard errors from 3 independent experiments (longitudinal observation of the same larvae over all timepoints). (<b>c</b>) Levels of AngHV-1, CyHV-2 and CyHV-3 detected in infected larvae according to time postinfection based on Luc2 signal expressed by viral recombinants. The data points represent the mean radiance per larvae according to time postinfection with mean ± standard error represented for each group at each timepoint (n = 30). The discontinuous line represents the cut-off for positivity and represents the mean + 3 × SD of the values obtained for mock-infected larvae. The number of positive larvae at each timepoint is represented by bars. * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Frames from timelapse video of CyHV-3 EGFP infection in zebrafish larvae from 2–3 dpi (<a href="#app1-viruses-15-00768" class="html-app">Video S1</a>). The video represents overlay of brightfield/transmission and EGFP fluorescence (green). Time postinfection (in days, hours, and minutes) is indicated under each frame. (<b>a</b>) Entire field of view from light-sheet microscopy. For the purposes of visual orientation, identifiable anatomical features and corresponding locations within larvae body (inset image) are indicated in the first panel. Images show that the infection is primarily localized around the inoculation site (red square), and a decrease in viral levels from 2.5–3 dpi. Scale bars = 100 µm. (<b>b</b>) Enlarged images of the area within red square in (<b>a</b>), representing key examples of apoptosis-like death occurring among large numbers of infected cells (red circles) around the inoculation site, with such events primarily characterized by blebbing followed by the appearance of cell debris resembling apoptotic bodies (<b>c</b>) Key example of highly motile infected cell (highlighted with yellow circle), migrating away from the site of inoculation.</p>
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<p>Network representing the functional associations between some of the top 250 most significant DEGs at 2 dpi. Using STRING protein query function in Cytoscape, 208 of the top 250 most significant DEGs were identified and scored based on functional association with each other. These data were used to generate a network in Cytoscape, which was then arranged based on GeneMania force directed layout. Each DEG is represented by a node, with edges (connecting lines) representing functional association. The largest contiguous network resulting from this analysis (136 nodes and 696 edges) is displayed. For visualization purposes, nodes in the peripheral regions of the network (representing DEGs <span class="html-italic">LOC100006895</span>, <span class="html-italic">rnasel3</span>, <span class="html-italic">ndrg1b</span>, <span class="html-italic">pde6ha</span>, and <span class="html-italic">serpinb1l1</span>) were omitted. This resulted in one large cluster (<b>a</b>), and two smaller clusters (<b>b</b>) and (<b>c</b>). STRING functional enrichment analysis indicated that most DEGs in this network were related to the immune response to infection (<a href="#app1-viruses-15-00768" class="html-app">Table S6</a>), and genes were labelled based on the main types of gene-set categories enriched in each of their respective clusters. This revealed distinct functions associated with each gene cluster, for example (<b>a</b>) interferon and PRR signalling, (<b>b</b>) antigen processing and presentation, and (<b>c</b>) complement response. The network was also analysed by CytoHubba, which was used to identify the potentially most important hub nodes within the network, with each node scored and coloured based on maximal clique centrality within the network, according to the CytoHubba score colour scale provided; however, this is better represented in <a href="#app1-viruses-15-00768" class="html-app">Figure S5</a>, with corresponding CytoHubba scores in <a href="#app1-viruses-15-00768" class="html-app">Table S7</a>.</p>
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<p>Summary of GSEA output indicating gene-set enrichment based on gene expression in CyHV-3-infected relative to mock-infected zebrafish larvae at 2 dpi. Cytoscape Network representing functional relationships between all significantly enriched gene-sets (positive or negative) identified in GSEA output (FDR adjusted <span class="html-italic">p</span>-value &lt; 0.25). Nodes in the network represent GO (blue border) and KEGG Pathway (gold border) gene-sets. Edges (connecting lines) between nodes represent the similarity coefficient (measuring the functional/gene overlap between pairs of gene-sets). Edge thickness corresponds to magnitude of similarity coefficient (only edges with coefficient ≥2 are displayed). Each gene set exhibits either a positive or negative normalized enrichment score (NES), indicating predominant upregulation or downregulation of constituent genes, respectively. Accordingly, node colour and size both represent NES magnitude (exponentially transformed scale), with positive and negative enrichment represented by red and green, respectively, according to the colour scale provided. The node border thickness indicates the significance of enrichment (inverse of FDR adjusted <span class="html-italic">p</span>-values, thus the lower the FDR adjusted <span class="html-italic">p</span>-value, the greater the thickness). Using the MCL cluster algorithm, GO and KEGG gene-sets were clustered together based on their functional similarity as indicated by similarity coefficients (beige ovals), and numbers were assigned to each cluster. For the purposes of visual clarity, clusters were manually repositioned, and within some clusters, sub-clusters were manually grouped based on functional similarity. Clusters that are overlapping or touching in the absence of any visible edges between their respective nodes have shared edges below the 0.2 coefficient cut-off for display. Clusters that do not exhibit edges between their respective nodes and are also not touching or overlapping either have no common edges or have common edges with similarity coefficient &gt;0.1. Higher quality figures for the whole manuscript are available in the PDF version.</p>
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<p>Visualization of differential gene expression in CyHV-3-infected zebrafish larvae (2 dpi) within KEGG pathway maps. Using the R package Pathview, gene expression data from our experiment was mapped to corresponding nodes in KEGG pathways (<b>a</b>) Herpes simplex virus 1 infection (<b>b</b>) Apoptosis and (<b>c</b>) Necroptosis pathways. Nodes represent zebrafish homologs of genes known to be involved in each pathway, with colour representing the log<sub>2</sub>-fold-change in gene expression in CyHV-3-infected relative to mock infected zebrafish larvae. Upregulated and downregulated genes are represented by red and green shades respectively, according to scale in the top right of each pathway. For visual clarity (due to large differences in fold change between genes) the maximum and minimum values in the colour scale is set at –1 and 1 log<sub>2</sub>-fold-change (corresponding to a two-fold change). It should be noted that many nodes represent combined differential expression from several zebrafish paralogs, thus the generic KEGG gene symbols are used as node names, which relate to the common names used to refer to protein products at each node. Not all the paralogs represented by each node are significantly differentially regulated. The list of zebrafish orthologs/paralogs corresponding to each node in these pathways can be accessed in the KEGG database using the corresponding gene-set references (Herpes simplex virus 1 infection (DRE05168), Apoptosis (DRE04210) and Necroptosis (DRE04217)), which can then be cross-referenced with data in <a href="#app1-viruses-15-00768" class="html-app">Table S5</a> (using NCBI/Entrez/GenBank Gene IDs or Gene Symbols). Key genes involved in IFN-stimulated PKR-mediated programmed cell death, i.e., translational inhibition [<a href="#B114-viruses-15-00768" class="html-bibr">114</a>,<a href="#B116-viruses-15-00768" class="html-bibr">116</a>,<a href="#B128-viruses-15-00768" class="html-bibr">128</a>] leading to apoptosis [<a href="#B112-viruses-15-00768" class="html-bibr">112</a>] (blue), IFN-stimulated PKR-mediated apoptosis [<a href="#B129-viruses-15-00768" class="html-bibr">129</a>,<a href="#B130-viruses-15-00768" class="html-bibr">130</a>] (pink), and IFN-stimulated PKR-mediated necroptosis [<a href="#B113-viruses-15-00768" class="html-bibr">113</a>] (yellow) are highlighted. Genes with dashed line borders indicate instances where downregulation, translational inhibition or post-translational inactivation of protein products promote the processes in question (see main text and references provided within this caption for details). White nodes represent instances where zebrafish homologs have not been assigned thus far, or where gene expression from zebrafish homologs have not been detected. Higher quality figures for the whole manuscript are available in the PDF version.</p>
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<p>Replication of CyHV-3 in different zebrafish strains. (<b>a</b>) Epifluorescence microscopy images representative of larvae inoculated by microinjection with either CyHV-3 EGFP or mock-inoculated with PBS according to time postinfection (longitudinal observation of the same larvae over all timepoints). For all strains infection clearance commenced from 4–5 dpi. Scale bars = 500 µm. (<b>b</b>) Numbers of infected larvae among zebrafish strains inoculated with CyHV-3 EGFP (n = 15). Data represents mean ± standard errors from 3 independent experiments (longitudinal observation of the same larvae over all timepoints). (<b>c</b>) IVIS analysis measuring Luc2 expression in different zebrafish strains microinjected with CyHV-3 Luc (n = 30). The data points represent the mean radiance per larvae according to time postinfection with mean ± standard error represented for each group at each timepoint. The discontinuous line represents the cut-off for positivity and the mean + 3 × SD of the values obtained for mock-infected larvae. The number of positive larvae at each timepoint is represented by bars. * <span class="html-italic">p</span> &lt; 0.05; *** <span class="html-italic">p</span> &lt; 0.001; **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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11 pages, 5821 KiB  
Article
Susceptibility of Goldfish to Cyprinid Herpesvirus 2 (CyHV-2) SH01 Isolated from Cultured Crucian Carp
by Jinxuan Wen, Yao Xu, Meizhen Su, Liqun Lu and Hao Wang
Viruses 2021, 13(9), 1761; https://doi.org/10.3390/v13091761 - 3 Sep 2021
Cited by 12 | Viewed by 3422
Abstract
Cyprinid herpesvirus 2 (CyHV-2), a member of the Alloherpesviridae family belonging to the genus Cyprinivirus, is a fatal contagious aquatic pathogen that affects goldfish (Carassius auratus) and crucian carp (Carassius carassius). Although crucian carp and goldfish belong to [...] Read more.
Cyprinid herpesvirus 2 (CyHV-2), a member of the Alloherpesviridae family belonging to the genus Cyprinivirus, is a fatal contagious aquatic pathogen that affects goldfish (Carassius auratus) and crucian carp (Carassius carassius). Although crucian carp and goldfish belong to the genus Carassius, it is unclear whether they are susceptible to the same CyHV-2 isolate. In addition, the origin of the crucian carp-derived CyHV-2 virus isolate remains unclear. CyHV-2 SH01 was isolated during herpesviral hematopoietic necrosis disease (HVHN) outbreaks in crucian carp at a local fish farm near Shanghai. CyHV-2 SH01 was confirmed by PCR and Western blot analysis of kidney, spleen, muscle, and blood tissue from the diseased crucian carp. Moreover, histopathological and ultra-pathological analyses revealed pathological changes characteristic of CyHV-2 SH01 infection in the tissues of the diseased crucian carp. In the present study, goldfish and crucian carp were challenged with CyHV-2 SH01 to elucidate viral virulence. We found that CyHV-2 SH01 could cause rapid and fatal disease progression in goldfish and crucian carp 24 h post-injection at 28 °C. Experimental infection of goldfish by injection indicated that the average virus titer in the kidney of the goldfish was 103.47 to 103.59 copies/mg. In addition, tissues exhibited the most prominent histopathological changes (cellular wrinkling and shrinkage, cytoplasmic vacuolation, fusion of the gill lamellae, and hepatic congestion) in CyHV-2 SH01-infected goldfish and crucian carp. Thus, crucian carp and goldfish showed a high sensitivity, with typical symptoms, to HVHN disease caused by CyHV-2 SH01. Full article
(This article belongs to the Special Issue Emerging Viruses in Aquaculture)
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<p>Detection of CyHV-2 in diseased crucian carp and phylogenetic tree construction. (<b>A</b>) CyHV-2 PCR analysis of tissue from diseased crucian carp. (<b>B</b>) KHV PCR analysis of tissue from diseased crucian carp. (<b>C</b>) Western blot analysis of CyHV-2 ORF121 in tissues from the diseased crucian carp. (<b>D</b>) The phylogenetic tree was constructed based on amino acids sequences of <span class="html-italic">helicase</span>, by using the neighbor-joining method in the MEGA 5.0 software. Bootstrap values of 1000 replications are shown at the nodes. GenBank accession numbers were as follows: CyHV-2(SH01, Bankit2436221; ZYJ-11, MK913427; YZ-01, MK260012; SY-C1, KM200722; ST-J1, NC019495), CyHV-3(J2, KX544843; KHV-U, NC009127; KHV-D132, AY939857), CyHV-1(Ma1, MK507841; NG-J1, NC019491).</p>
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<p>Histological differences in the liver, spleen, kidney, and gill of the diseased crucian carp and control fish (healthy fish). Samples of liver, spleen, kidney, and gill from the diseased fish and the control fish (healthy fish) were fixed, embedded, sectioned, and stained with hematoxylin and eosin (HE). The slides were examined with light microscopy. Scale bars = 50 µm. (<b>A</b>) Swelling of hepatocytes (sh) marked by an arrow; (<b>B</b>) the arrow shows vacuolation (v); (<b>C</b>) focal necrotic lesions (n) and vacuolation (v) were present on the kidney of the diseased crucian carp; (<b>D</b>) the arrow shows the exfoliation of epithelial cells (e).</p>
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<p>Electron micrograph showing mature virions (red arrow) in a naturally infected kidney cell of crucian carp. (<b>A</b>) Scale bar = 1 μm. Insert (<b>B</b>): higher magnification of enveloped capsids. Scale bar = 500 nm.</p>
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<p>Gross pathology of CyHV-2 in infected goldfish and crucian carp. Goldfish infected by intraperitoneal injection: dorsal and caudal fins bleeding from the base, and liver and spleen enlargement. Crucian carp infected by intraperitoneal injection: gill bleeding, massive abdominal hemorrhage, abdominal swelling and congestion, eyeball protrusion. Red arrows show the representative symptoms of CyHV-2 infection in experimental fish.</p>
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<p>Virulence of CyHV-2 in goldfish and crucian carp. (<b>A</b>) CyHV-2 PCR assay of the tissue samples from the experimental goldfish. (<b>B</b>) CyHV-2 PCR assay of the tissue samples from the experimental crucian carp (<b>C</b>) CyHV-2 DNA load in kidney of experimental goldfish and crucian carp. Data are from at least three independent experiments; error bars represent the standard errors of the means (SEM). Asterisks indicate significant differences relative to the healthy goldfish or healthy crucian carp (ANOVA and Dunnett´s multiple comparison test; ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>Histological changes in the liver, spleen, kidney, and gill from challenged goldfish (HE staining). Scale bars = 50 µm. (<b>A</b>) Extensive necrosis of liver parenchyma. Karyopyknosis (k) and hyperemia (h) marked by an arrow; (<b>B</b>) vacuolation of cytoplasm (v) and hemosiderosis (he) in spleen; (<b>C</b>) the arrow shows the swelling of glomerular (sg) and nuclear vacuole (nv); (<b>D</b>) exfoliation of epithelial cells (e) marked by an arrow.</p>
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<p>Histological changes in the liver, spleen, kidney, and gill from challenged crucian carp (HE staining). Scale bars = 50 µm. (<b>A</b>) swelling of hepatocytes (sh) and decrease of hepatic sinusoid marked by an arrow; (<b>B</b>) nuclear vacuole (nv) and vacuolation (v) in spleen; (<b>C</b>) the arrow shows the swelling of renal tubular epithelial cell (se) and necrosis (n); (<b>D</b>) exfoliation of epithelial cells (e) marked by an arrow.</p>
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26 pages, 5168 KiB  
Article
Genomes of Anguillid Herpesvirus 1 Strains Reveal Evolutionary Disparities and Low Genetic Diversity in the Genus Cyprinivirus
by Owen Donohoe, Haiyan Zhang, Natacha Delrez, Yuan Gao, Nicolás M. Suárez, Andrew J. Davison and Alain Vanderplasschen
Microorganisms 2021, 9(5), 998; https://doi.org/10.3390/microorganisms9050998 - 5 May 2021
Cited by 11 | Viewed by 3262
Abstract
Anguillid herpesvirus 1 (AngHV-1) is a pathogen of eels and a member of the genus Cyprinivirus in the family Alloherpesviridae. We have compared the biological and genomic features of different AngHV-1 strains, focusing on their growth kinetics in vitro and genetic content, [...] Read more.
Anguillid herpesvirus 1 (AngHV-1) is a pathogen of eels and a member of the genus Cyprinivirus in the family Alloherpesviridae. We have compared the biological and genomic features of different AngHV-1 strains, focusing on their growth kinetics in vitro and genetic content, diversity, and recombination. Comparisons based on three core genes conserved among alloherpesviruses revealed that AngHV-1 exhibits a slower rate of change and less positive selection than other cypriniviruses. We propose that this may be linked to major differences in host species and corresponding epidemiological circumstances. Efforts to derive evolutionary rate estimates for cypriniviruses under various theoretical models were ultimately unrewarding. We highlight the potential value of future collaborative efforts towards generating short-term evolutionary rate estimates based on known sequence sampling dates. Finally, we revealed that there is significantly less genetic diversity in core gene sequences within cyprinivirus species clades compared to species in the family Herpesviridae. This suggests that cyprinivirus species may have undergone much more vigorous purifying selection post species clade divergence. We discuss whether this may be linked to biological and anthropogenic factors or to sampling bias, and we propose that the comparison of short-term evolutionary rates between species may provide further insights into these differences. Full article
(This article belongs to the Special Issue Herpesvirus Diversity and Evolution)
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<p>Analysis of AngHV-1 genome sequences. (<b>a</b>) Phylogenetic analysis (UPGMA). Bootstrap values (1000 replicates) are indicated at the right of each node. These values are also illustrated by the colors of the branches leading to each node. Numbers above each branch represent substitutions per nucleotide observed along the branch. The geographical origin of each strain is indicated in brackets. (<b>b</b>) Recombination analysis. Five potential recombination events were identified using nine sequenced isolates as input. For each event, the left column illustrates the results of RDP analyses, including locations of recombination events and <span class="html-italic">p</span>-values. The middle and the right columns show phylogenetic analyses based on the genome excluding the region of recombination and the same tree based on the recombination region only, respectively. Numbers on internal branches indicate bootstrap values (1000 replicates); only values &gt;50% are shown. The scales illustrate the number of substitutions per nucleotide. The color code used is described at the top.</p>
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<p>Comparisons of the growth of AngHV-1 strains in vitro. (<b>a</b>) Viral growth assay. EK-1 cells were infected with the strains indicated (see top for symbol codes) and the log<sub>10</sub> value of the titer (pfu/mL) in the cell supernatant was determined at the indicated dpi. Data are presented in <a href="#microorganisms-09-00998-t001" class="html-table">Table 1</a>. Cells were infected with the strains indicated, and plaque areas were measured over time. Data presented are the mean ± SEM for measurements of 20 randomly selected plaques. (<b>c</b>) Correlation between plaque area measured at 8 dpi (panel (<b>a</b>)) and viral titers measured at 4 dpi (panel (<b>b</b>)). Data presented are the mean ± SEM.</p>
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<p>Phylogenetic analysis of concatenated cyprinivirus core gene sequences. Cladogram of bootstrap consensus tree (UPGMA) from phylogenetic analysis of concatenated AA sequences of three core genes (DNA polymerase, helicase and terminase) derived from sequenced cyprinivirus genomes. Bootstrap values (1000 replicates) are indicated at the right of each node. These values are also illustrated through the colors of the branches leading to each node, according to the scale on the top left. Branch lengths are arbitrary.</p>
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<p>Relative rates of cyprinivirus evolution. ML trees were produced based on the same data used to generate the cladograms in <a href="#microorganisms-09-00998-f003" class="html-fig">Figure 3</a>. (<b>a</b>) ML tree based on concatenated core gene AA sequences. (<b>b</b>) ML tree based on concatenated core gene DNA sequences excluding the third codon position. In these trees, branch lengths represent the number of substitutions per site. The results of Tajima’s relative rate tests for pairwise comparison between species clades are presented in each panel. <span class="html-italic">p</span>-values highlighted in red indicate significant differences in the rate of evolution between species. The results for Tajima’s relative rate tests presented in panel (<b>b</b>) were obtained by considering transversions only. Equivalent tests, considering transitions only, are presented in <a href="#app1-microorganisms-09-00998" class="html-app">Table S4</a>.</p>
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<p>AA changes in cyprinivirus core genes driven by positive selection. CodeML analysis was performed to identify AA changes between cyprinivirus species that were driven by positive selection. Positive selection was identified in the (<b>a</b>) DNA polymerase and (<b>b</b>) helicase genes. The ML trees based on DNA polymerase and helicase codon alignments are displayed. A summary of results and <span class="html-italic">p</span>-values are indicated above each branch of interest. Only changes supported by PP &gt; 0.95 are shown. Codon and AA changes are displayed to the right of each tree, with position in alignments and color-coded descriptions of codon changes indicated on top of each column. Boxes around codons in each column are colored corresponding to the color-coded codon changes on top of each column, with codons representing the changes driven by positive selection indicated by thicker lines. PP values and species-specific positions of AA sites are summarized in <a href="#microorganisms-09-00998-t003" class="html-table">Table 3</a>.</p>
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<p>Comparison of species-specific nucleotide substitution rate estimates between HHV-1 and cypriniviruses. HHV-1 substitution rates were reported in the studies described in <a href="#app1-microorganisms-09-00998" class="html-app">Table S9</a>. Rate estimates for cypriniviruses were estimated based on two different calibration hypotheses. Corresponding time trees are available in <a href="#app1-microorganisms-09-00998" class="html-app">Figure S3</a>.</p>
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<p>Comparison of nucleotide diversity in core genes between cypriniviruses and members of the family <span class="html-italic">Herpesviridae</span>. Comparisons were based on species-level nucleotide alignments and trees generated using DNA polymerase, helicase, and terminase sequences from each species. Sequences from a fourth core gene, uracil-DNA glycosylase, were also added, facilitating the comparison of diversity between highly conserved and less well conserved core genes. All species name acronyms are defined in <a href="#app1-microorganisms-09-00998" class="html-app">Table S1</a>. The comparison consisted of 492 sequences from 123 sequenced strains. The 48 phylogenetic trees corresponding to each species-level gene alignment are provided in <a href="#app1-microorganisms-09-00998" class="html-app">Figures S4 and S5</a>. (<b>a</b>) Diversity (π) from each species-level nucleotide sequence alignment. (<b>b</b>) Mean branch length for each species-level tree. Pairwise comparison: * = <span class="html-italic">p</span> &lt; 0.05, ** = <span class="html-italic">p</span> &lt; 0.01.</p>
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