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Search Results (12,290)

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32 pages, 3135 KiB  
Review
Non-IID Medical Imaging Data on COVID-19 in the Federated Learning Framework: Impact and Directions
by Fatimah Saeed Alhafiz and Abdullah Ahmad Basuhail
COVID 2024, 4(12), 1985-2016; https://doi.org/10.3390/covid4120140 (registering DOI) - 16 Dec 2024
Abstract
After first appearing in December 2019, coronavirus disease 2019 (COVID-19) spread rapidly, leading to global effects and significant risks to health systems. The virus’s high replication competence in the human lung accelerated the severity of lung pneumonia cases, resulting in a catastrophic death [...] Read more.
After first appearing in December 2019, coronavirus disease 2019 (COVID-19) spread rapidly, leading to global effects and significant risks to health systems. The virus’s high replication competence in the human lung accelerated the severity of lung pneumonia cases, resulting in a catastrophic death rate. Variable observations in the clinical testing of virus-related and patient-related cases across different populations led to ambiguous results. Medical and epidemiological studies on the virus effectively use imaging and scanning devices to help explain the virus’s behavior and its impact on the lungs. Varying equipment resources and a lack of uniformity in medical imaging acquisition led to disorganized and widely dispersed data collection worldwide, while high heterogeneity in datasets caused a poor understanding of the virus and related strains, consequently leading to unstable results that could not be generalized. Hospitals and medical institutions, therefore, urgently need to collaborate to share and extract useful knowledge from these COVID-19 datasets while preserving the privacy of medical records. Researchers are turning to an emerging technology that enhances the reliability and accessibility of information without sharing actual patient data. Federated learning (FL) is a technique that learns distributed data locally, sharing only the weights of each local model to compute a global model, and has the potential to improve the generalization of diagnosis and treatment decisions. This study investigates the applicability of FL for COVID-19 under the impact of data heterogeneity, defining the lung imaging characteristics and identifying the practical constraints of FL in medical fields. It describes the challenges of implementation from a technical perspective, with reference to valuable research directions, and highlights the research challenges that present opportunities for further efforts to overcome the pitfalls of distributed learning performance. The primary objective of this literature review is to provide valuable insights that will aid in the formulation of effective technical strategies to mitigate the impact of data heterogeneity on the generalization of FL results, particularly in light of the ongoing and evolving COVID-19 pandemic. Full article
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<p>Training techniques for distributed data: (<b>a</b>) individual training technique, (<b>b</b>) centralizing technique, and (<b>c</b>) federated learning technique.</p>
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<p>The algorithm of central FL architecture.</p>
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<p>The algorithm of peer-to-peer architecture.</p>
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<p>Skewness type examples including (<b>a</b>) quantity skew example, (<b>b</b>) label distribution skew example, (<b>c</b>) extreme label skew example, (<b>d</b>) acquisition protocol skew example, (<b>e</b>) modality skew, and (<b>f</b>) feature skew example.</p>
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<p>The number of investigations of skewness types and the impact of each on the FL performance (collected from considered papers, as referred to in each skewness-type section).</p>
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<p>Type of lung imaging dataset modalities used in FL framework for COVID-19.</p>
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<p>The average accuracy of the models that correspond to the skewness type.</p>
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15 pages, 1364 KiB  
Review
Current Status and Significance of Additional Vaccination with COVID-19 Vaccine in Japan—Considerations from Antibody Levels from Hybrid Immunity and Public Perceptions
by Hiroshi Kusunoki
Vaccines 2024, 12(12), 1413; https://doi.org/10.3390/vaccines12121413 (registering DOI) - 15 Dec 2024
Abstract
This report examines the evolving role of coronavirus disease 2019 (COVID-19) vaccination in Japan, especially in light of the reduced public concern following the reclassification of COVID-19 as a Category 5 infectious disease in May 2023. With over half the population estimated to [...] Read more.
This report examines the evolving role of coronavirus disease 2019 (COVID-19) vaccination in Japan, especially in light of the reduced public concern following the reclassification of COVID-19 as a Category 5 infectious disease in May 2023. With over half the population estimated to have hybrid immunity from prior infections and vaccinations, this report evaluated the necessity and frequency of additional booster doses. Despite strong recommendations from Japanese medical societies to continue vaccination, public skepticism remains owing to financial burdens, adverse reactions, and the perceived limited benefits of frequent boosters. Studies on antibody responses have revealed that individuals with hybrid immunity maintain robust protection with significantly elevated antibody titers that persist over extended periods. Case studies have indicated durable immunity among individuals who have both been vaccinated and experienced breakthrough infections, raising questions about the need for uniform booster policies. This report also discusses the newly approved replicon-type (self-amplifying) vaccines currently available only in Japan, which have generated public and professional debates regarding their efficacy and safety. A more personalized approach to vaccination that takes into account the antibody titers, prior infection history, and individual choices is recommended. Finally, this report underscores the importance of aligning vaccination policies with scientific evidence and public sentiment to optimize COVID-19 countermeasures in Japan. Full article
(This article belongs to the Special Issue Immune Response after Respiratory Infection or Vaccination)
17 pages, 1795 KiB  
Review
Detrimental Effects of Anti-Nucleocapsid Antibodies in SARS-CoV-2 Infection, Reinfection, and the Post-Acute Sequelae of COVID-19
by Emi E. Nakayama and Tatsuo Shioda
Pathogens 2024, 13(12), 1109; https://doi.org/10.3390/pathogens13121109 (registering DOI) - 15 Dec 2024
Viewed by 187
Abstract
Antibody-dependent enhancement (ADE) is a phenomenon in which antibodies enhance subsequent viral infections rather than preventing them. Sub-optimal levels of neutralizing antibodies in individuals infected with dengue virus are known to be associated with severe disease upon reinfection with a different dengue virus [...] Read more.
Antibody-dependent enhancement (ADE) is a phenomenon in which antibodies enhance subsequent viral infections rather than preventing them. Sub-optimal levels of neutralizing antibodies in individuals infected with dengue virus are known to be associated with severe disease upon reinfection with a different dengue virus serotype. For Severe Acute Respiratory Syndrome Coronavirus type-2 infection, three types of ADE have been proposed: (1) Fc receptor-dependent ADE of infection in cells expressing Fc receptors, such as macrophages by anti-spike antibodies, (2) Fc receptor-independent ADE of infection in epithelial cells by anti-spike antibodies, and (3) Fc receptor-dependent ADE of cytokine production in cells expressing Fc receptors, such as macrophages by anti-nucleocapsid antibodies. This review focuses on the Fc receptor-dependent ADE of cytokine production induced by anti-nucleocapsid antibodies, examining its potential role in severe COVID-19 during reinfection and its contribution to the post-acute sequelae of COVID-19, i.e., prolonged symptoms lasting at least three months after the acute phase of the disease. We also discuss the protective effects of recently identified anti-spike antibodies that neutralize Omicron variants. Full article
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<p>Number of hospitalized patients and COVID-19-related deaths in Japan (April 2020–March 2024). Data were modified from official statistics collated by Our World in Data, “COVID-19, hospitalizations” [<a href="#B44-pathogens-13-01109" class="html-bibr">44</a>]. The numbers in red represent the official death counts sourced from the Japanese Ministry of Health, Labour and Welfare [<a href="#B45-pathogens-13-01109" class="html-bibr">45</a>] for each fiscal year from April 2020 to the end of March 2024. The Japanese government changed its COVID-19 case counting policy from including all to only limited cases reported from selected hospitals on May 8, 2023. During the period highlighted in pale green, it is speculated that the actual number of hospitalized patients may be higher than that depicted in this graph. The major variants reported during each surge, as identified by the National Institute of Infectious Disease in Japan, are also noted [<a href="#B46-pathogens-13-01109" class="html-bibr">46</a>].</p>
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<p>The schematic mechanisms of antibody dependent enhancement (ADE) of SARS-CoV-2. (<b>Left</b>) The Fc receptor-dependent ADE of infection is well documented in dengue virus infection. In the case of SARS-CoV-2 infection, it was observed only in the artificial cells ectopically expressing Fc receptors or ACE2/TMPRSS2. (<b>Middle</b>) The Fc receptor-independent ADE of infection is caused by a conformational change in S proteins upon antibody binding. Progeny virions bud into ER-Golgi intermediate compartment (ERGIC) and most N proteins are located in the cytoplasm of infected cells and released by cell death. (<b>Right</b>) ADE of cytokine production is caused by translocation of the N protein and anti-N antibody complex via Fc receptors on the surface of macrophages. The blue circles denote nuclei of cells.</p>
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<p>The fight against mutated viruses by antibody and memory B cell repertories. Different colors show the different antibody and B cell clones. “Y” s and Y on the B cells denote the antibodies in serum and B cell receptors on the surface of B cells, respectively. The short arrows represent the protective effect of antibodies in plasma, which can neutralize the viruses previously infected or vaccinated strains. The long arrows represent the process of stimulation of the selected B cell maturation followed by efficient neutralization of the variants by the produced antibodies.</p>
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<p>Characteristics of anti-spike (S) and anti-nucleocapsid (N) antibodies. ADE: Antibody dependent enhancement.</p>
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<p>Factors influencing the severity of COVID-19. The negative factors for health are shown in red.</p>
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11 pages, 265 KiB  
Article
Emergency Dental Care During the SARS-CoV-2 Pandemic and Its Effect on Medication-Related Osteonecrosis of the Jaw: A Retrospective Study in Hungary
by Gabor Kammerhofer, Daniel Vegh, Petra Papocsi, Martin Major, Patrik Fuzes, Mihaly Vaszilko, Marta Ujpal, Kata Sara Haba, Gyorgy Szabo and Zsolt Nemeth
Appl. Sci. 2024, 14(24), 11691; https://doi.org/10.3390/app142411691 (registering DOI) - 14 Dec 2024
Viewed by 330
Abstract
The COVID-19 pandemic has significantly impacted healthcare systems worldwide, including dental care. This study aimed to investigate the effects of the pandemic on the management of medication-related osteonecrosis of the jaw (MRONJ). Abnormal blood glucose levels may contribute to the development of MRONJ [...] Read more.
The COVID-19 pandemic has significantly impacted healthcare systems worldwide, including dental care. This study aimed to investigate the effects of the pandemic on the management of medication-related osteonecrosis of the jaw (MRONJ). Abnormal blood glucose levels may contribute to the development of MRONJ and act as an important risk factor. This retrospective study included 217 patients with MRONJ. The patients were divided into two groups: the pre-COVID-19 group (16 March 2018 to 16 March 2020; 75 patients; 46 females and 29 males; average age, 74.5 years) and the post-COVID-19 group (1 June 2022 to 1 June 2024; 142 patients; 91 females and 51 males; average age, 69.6 years). Data pertaining to demographic characteristics, length of hospital stay, glucose levels, location of lesions, and underlying diseases were collected. The average length of hospital stays was 4 and 5 days in the pre- and post-COVID-19 groups, respectively. The average fasting glucose levels were 5.5 and 5.9 mmol/L in the pre- and post-COVID-19 groups, respectively. Localization patterns shifted, with a higher incidence in the maxilla in the post-COVID-19 group. These findings suggest a significant increase in MRONJ cases and changes in clinical outcomes due to the pandemic. The increase in the number of patients treated after the pandemic highlights the importance of ongoing vigilance and adaptation in preventing MRONJ, with a particular focus on risk factors. Full article
(This article belongs to the Special Issue Advanced Clinical Technology for Oral Health Promotion)
13 pages, 277 KiB  
Article
Respiratory Syncytial Virus and Other Respiratory Viruses in Hospitalized Infants During the 2023–2024 Winter Season in Mexico
by José J. Leija-Martínez, Sandra Cadena-Mota, Ana María González-Ortiz, Juan Carlos Muñoz-Escalante, Gabriel Mata-Moreno, Pedro Gerardo Hernández-Sánchez, María Vega-Morúa and Daniel E. Noyola
Viruses 2024, 16(12), 1917; https://doi.org/10.3390/v16121917 (registering DOI) - 14 Dec 2024
Viewed by 322
Abstract
Respiratory syncytial virus (RSV) is the leading cause of lower respiratory tract infections in young children. During the COVID-19 pandemic, a significant change in the epidemiology of RSV and other viruses occurred worldwide, leading to a reduction in the circulation of these infectious [...] Read more.
Respiratory syncytial virus (RSV) is the leading cause of lower respiratory tract infections in young children. During the COVID-19 pandemic, a significant change in the epidemiology of RSV and other viruses occurred worldwide, leading to a reduction in the circulation of these infectious agents. After the pandemic, the resurgence of seasonal respiratory viruses occurred, but some features of these infections contrast to those registered prior to the pandemic. In the present work, we studied 390 children <5 years old admitted to the hospital to determine the contribution of RSV, SARS-CoV-2, human metapneumovirus (hMPV), and influenza viruses to acute respiratory infections during the 2023–2024 winter season in Mexico. RSV was the most frequently detected virus (n = 160, 41%), followed by SARS-CoV-2 (n = 69, 17.7%), hMPV (n = 68, 17.4%), and influenza A or B (n = 40, 10.26%). Fourteen patients required admission to the intensive care unit, including six (42.8%) with RSV infection. Four children died (1%). At least one of the four viruses was detected in all deceased patients: SARS-CoV-2 in one; SARS-CoV-2 and hMPV in two; and RSV, influenza A, and SARS-CoV-2 in one. The high impact of RSV and other respiratory viruses indicates the need to implement specific preventive programs to reduce the morbidity and mortality associated with them. Full article
(This article belongs to the Special Issue RSV Epidemiological Surveillance: 2nd Edition)
11 pages, 459 KiB  
Article
Influence of Type of Dental Visit on the Incidence of COVID-19 and Related Hospitalisation Among Older People in Japan
by Mizuki Saito, Yoshihiro Shimazaki, Toshiya Nonoyama and Yoshinori Inamoto
Int. J. Environ. Res. Public Health 2024, 21(12), 1668; https://doi.org/10.3390/ijerph21121668 (registering DOI) - 14 Dec 2024
Viewed by 308
Abstract
In 2020, the coronavirus disease 2019 (COVID-19) pandemic began worldwide. We examined the association between dental visit status and the incidence of COVID-19 and hospitalisation for it among older people based on medical claims data to help reduce COVID-19 severity. The study included [...] Read more.
In 2020, the coronavirus disease 2019 (COVID-19) pandemic began worldwide. We examined the association between dental visit status and the incidence of COVID-19 and hospitalisation for it among older people based on medical claims data to help reduce COVID-19 severity. The study included 170,232 people who were 75–85 years old in fiscal 2019, with fiscal 2020 and 2021 serving as the follow-up period to ascertain the status of COVID-19. Using medical claims data, we investigated four types of dental visit (no visit, only periodontal treatment, periodontal and other treatment, and only other treatment) during fiscal 2019 and the incidence of COVID-19 and hospitalisation for COVID-19 during the follow-up period. Logistic regression analyses were performed with the incidence of COVID-19 and hospitalisation for COVID-19 as the dependent variables. Of the participants, 3206 (1.9%) developed COVID-19, of whom, 559 (17.4%) were hospitalised. There was not a significant association between the incidence of COVID-19 and type of dental visit. Participants with dental visits for periodontal treatment during the baseline year had a significantly lower odds ratio (OR) for hospitalisation due to COVID-19 compared to those without dental visits (OR: 0.71, 95% confidence interval: 0.58–0.78). The results suggest that dental visits for periodontal treatment including maintenance are important not only for maintaining oral health but also for preventing severe COVID-19. Full article
(This article belongs to the Special Issue Dental Care: Oral and Systemic Disease Prevention)
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<p>Flow-chart of study participant selection.</p>
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17 pages, 827 KiB  
Review
Vaccine Hesitancy and Associated Factors Amongst Health Professionals: A Scoping Review of the Published Literature
by Antonios Christodoulakis, Izolde Bouloukaki, Antonia Aravantinou-Karlatou, Michail Zografakis-Sfakianakis and Ioanna Tsiligianni
Vaccines 2024, 12(12), 1411; https://doi.org/10.3390/vaccines12121411 - 13 Dec 2024
Viewed by 367
Abstract
Background/Objectives: Healthcare professionals (HCPs) hold significant influence over public attitudes toward vaccinations. Studies suggest that HCPs are hesitant towards the coronavirus disease 2019 (COVID-19) vaccines. This hesitancy could lead to lower vaccination rates in the community. Therefore, this scoping review aimed to assess [...] Read more.
Background/Objectives: Healthcare professionals (HCPs) hold significant influence over public attitudes toward vaccinations. Studies suggest that HCPs are hesitant towards the coronavirus disease 2019 (COVID-19) vaccines. This hesitancy could lead to lower vaccination rates in the community. Therefore, this scoping review aimed to assess the extent of hesitancy towards COVID-19 booster doses among HCPs and identify the associated factors. Methods: A comprehensive search was conducted in the PubMed and Scopus databases from April to August 2024, using keywords related to COVID-19, vaccine hesitancy, HCPs, and booster vaccination. Studies that had been peer-reviewed, published in English after 2022, and focused on the hesitancy of the COVID-19 booster dose hesitancy among HCPs were included. Out of the 6703 studies screened, 24 studies were included. Results: Most of the HCPs have received their initial series of COVID-19 vaccinations. However, there is a lower rate of uptake for booster doses, with hesitancy rates ranging from 12% to 66.5%. Hesitancy rates varied significantly across continents, with Asia, Africa, and Europe ranging from 19.7% to 66.5%, 27% to 46.1%, 14% to 60.2%, respectively. Hesitancy was reported to be influenced by various factors, including concerns about vaccine safety, necessity, and effectiveness of these vaccines. In addition, the hesitancy regarding booster doses was also found to be influenced by factors like age, gender, profession, and previous COVID-19. Physicians, nurses, and pharmacists exhibited vaccine hesitancy rates ranging from 12.8% to 43.7%, 26% to 37%, and 26% to 34.6%, respectively. Conclusions: Our review underscores the hesitancy among HCPs towards receiving booster doses across countries around the world and explores the underlying factors. These findings provide valuable insights for the design of future pandemic vaccination programs. Full article
(This article belongs to the Special Issue Vaccines and Vaccination: Feature Papers)
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<p>PRISMA 2020 flow diagram for new systematic reviews which included searches of databases and registers only for this scoping review.</p>
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17 pages, 1649 KiB  
Review
COVID-19 Pathophysiology: Inflammation to Cardiac Injury
by Sami Fouda, Robert Hammond, Peter D Donnelly, Anthony R M Coates and Alexander Liu
Hearts 2024, 5(4), 628-644; https://doi.org/10.3390/hearts5040048 - 13 Dec 2024
Viewed by 1356
Abstract
Coronavirus disease 19 (COVID-19) is responsible for one of the worst pandemics in human history. The causative virus, the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), can invade host cells in multiple organs by binding the angiotensin-converting enzyme (ACE) II expressed on the [...] Read more.
Coronavirus disease 19 (COVID-19) is responsible for one of the worst pandemics in human history. The causative virus, the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), can invade host cells in multiple organs by binding the angiotensin-converting enzyme (ACE) II expressed on the cell surface. Once inside the host cell, viral replication takes place, leading to cellular disruption and the release of signal molecules that are recognised by the innate immune system. Innate immunity activation leads to the release of proinflammatory cytokines and primes the adaptive immune system. The proinflammatory environment defends against further viral entry and replication. SARS-CoV-2 infection is thought to lead to myocardial injury through several mechanisms. Firstly, direct viral-mediated cellular invasion of cardiomyocytes has been shown in in vitro and histological studies, which is related to cellular injury. Secondly, the proinflammatory state during COVID-19 can lead to myocardial injury and the release of protein remnants of the cardiac contractile machinery. Thirdly, the hypercoagulable state of COVID-19 is associated with thromboembolism of coronary arteries and/or other vascular systems. COVID-19 patients can also develop heart failure; however, the underlying mechanism is much less well-characterised than for myocardial injury. Several questions remain regarding COVID-19-related heart failure, including its potential reversibility, the role of anti-viral medications in its prevention, and the mechanisms underlying heart failure pathogenesis in long COVID-19. Further work is required to improve our understanding of the mechanism of cardiac sequelae in COVID-19, which may enable us to target SARS-CoV-2 and protect patients against longer-lasting cardiovascular complications. Full article
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<p>Host cell infection by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Angiotensin-converting enzyme (ACE).</p>
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<p>Inflammatory activation in response to Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infections. PAMPs: Pathogen Associated Molecular Patterns; DAMPs: Damage Associated Molecular Patterns.</p>
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<p>Adaptive immune system activation in Severe Acute Respiratory Syndrome Coronavirus 2 infections. MHC: Major Histocompatibility Complex.</p>
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<p>Potential mechanisms of myocardial injury in coronavirus disease 19.</p>
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<p>Central Illustration: BNP: B-type natriuretic peptide; CMR: cardiovascular magnetic resonance; ECG: electrocardiogram; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.</p>
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25 pages, 5211 KiB  
Article
A Novel Grammar-Based Approach for Patients’ Symptom and Disease Diagnosis Information Dissemination to Maintain Confidentiality and Information Integrity
by Sanjay Nag, Nabanita Basu, Payal Bose and Samir Kumar Bandyopadhyay
Bioengineering 2024, 11(12), 1265; https://doi.org/10.3390/bioengineering11121265 - 13 Dec 2024
Viewed by 358
Abstract
Disease prediction using computer-based methods is now an established area of research. The importance of technological intervention is necessary for the better management of disease, as well as to optimize use of limited resources. Various AI-based methods for disease prediction have been documented [...] Read more.
Disease prediction using computer-based methods is now an established area of research. The importance of technological intervention is necessary for the better management of disease, as well as to optimize use of limited resources. Various AI-based methods for disease prediction have been documented in the literature. Validated AI-based systems support diagnoses and decision making by doctors/medical practitioners. The resource-efficient dissemination of the symptoms identified and the diagnoses undertaken is the requirement of the present-day scenario to support paperless, yet seamless, information sharing. The representation of symptoms using grammar provides a novel way for the resource-efficient encoding of disease diagnoses. Initially, symptoms are represented as strings, and, in terms of grammar, this is called a sentence. Moreover, the conversion of the generated string containing the symptoms and the diagnostic outcome to a QR code post encryption makes it portable. The code can be stored in a mobile application, in a secure manner, and can be scanned wherever required, universally. The patient can carry the medical condition and the diagnosis in the form of the QR code for medical consultations. This research work presents a case study based on two diseases, influenza and coronavirus, to highlight the proposed methodology. Both diseases have some common and overlapping symptoms. The proposed system can be implemented for any kind of disease detection, including clinical and diagnostic imaging. Full article
(This article belongs to the Section Biosignal Processing)
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<p>Symptoms of coronavirus infection and influenza for mild to critical cases of the diseases.</p>
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<p>Overlay visualization map of the literature reviewed, showing the association of keywords used and the timeline of the reviewed works.</p>
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<p>Overlay visualization map of the literature reviewed, showing the authors and the citations of the reviewed works [<a href="#B17-bioengineering-11-01265" class="html-bibr">17</a>,<a href="#B18-bioengineering-11-01265" class="html-bibr">18</a>,<a href="#B19-bioengineering-11-01265" class="html-bibr">19</a>,<a href="#B20-bioengineering-11-01265" class="html-bibr">20</a>,<a href="#B21-bioengineering-11-01265" class="html-bibr">21</a>,<a href="#B22-bioengineering-11-01265" class="html-bibr">22</a>,<a href="#B23-bioengineering-11-01265" class="html-bibr">23</a>,<a href="#B24-bioengineering-11-01265" class="html-bibr">24</a>,<a href="#B25-bioengineering-11-01265" class="html-bibr">25</a>,<a href="#B26-bioengineering-11-01265" class="html-bibr">26</a>,<a href="#B27-bioengineering-11-01265" class="html-bibr">27</a>,<a href="#B28-bioengineering-11-01265" class="html-bibr">28</a>,<a href="#B29-bioengineering-11-01265" class="html-bibr">29</a>,<a href="#B30-bioengineering-11-01265" class="html-bibr">30</a>,<a href="#B31-bioengineering-11-01265" class="html-bibr">31</a>,<a href="#B32-bioengineering-11-01265" class="html-bibr">32</a>,<a href="#B33-bioengineering-11-01265" class="html-bibr">33</a>,<a href="#B34-bioengineering-11-01265" class="html-bibr">34</a>,<a href="#B35-bioengineering-11-01265" class="html-bibr">35</a>,<a href="#B36-bioengineering-11-01265" class="html-bibr">36</a>,<a href="#B37-bioengineering-11-01265" class="html-bibr">37</a>,<a href="#B38-bioengineering-11-01265" class="html-bibr">38</a>,<a href="#B39-bioengineering-11-01265" class="html-bibr">39</a>,<a href="#B40-bioengineering-11-01265" class="html-bibr">40</a>,<a href="#B41-bioengineering-11-01265" class="html-bibr">41</a>,<a href="#B42-bioengineering-11-01265" class="html-bibr">42</a>,<a href="#B43-bioengineering-11-01265" class="html-bibr">43</a>,<a href="#B44-bioengineering-11-01265" class="html-bibr">44</a>,<a href="#B45-bioengineering-11-01265" class="html-bibr">45</a>,<a href="#B46-bioengineering-11-01265" class="html-bibr">46</a>,<a href="#B47-bioengineering-11-01265" class="html-bibr">47</a>,<a href="#B48-bioengineering-11-01265" class="html-bibr">48</a>,<a href="#B49-bioengineering-11-01265" class="html-bibr">49</a>,<a href="#B50-bioengineering-11-01265" class="html-bibr">50</a>,<a href="#B51-bioengineering-11-01265" class="html-bibr">51</a>,<a href="#B52-bioengineering-11-01265" class="html-bibr">52</a>,<a href="#B53-bioengineering-11-01265" class="html-bibr">53</a>,<a href="#B54-bioengineering-11-01265" class="html-bibr">54</a>,<a href="#B55-bioengineering-11-01265" class="html-bibr">55</a>,<a href="#B56-bioengineering-11-01265" class="html-bibr">56</a>,<a href="#B57-bioengineering-11-01265" class="html-bibr">57</a>,<a href="#B58-bioengineering-11-01265" class="html-bibr">58</a>,<a href="#B59-bioengineering-11-01265" class="html-bibr">59</a>,<a href="#B60-bioengineering-11-01265" class="html-bibr">60</a>,<a href="#B61-bioengineering-11-01265" class="html-bibr">61</a>,<a href="#B62-bioengineering-11-01265" class="html-bibr">62</a>,<a href="#B63-bioengineering-11-01265" class="html-bibr">63</a>].</p>
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<p>The overlay diagram, showing the authors and the association map of the authors [<a href="#B17-bioengineering-11-01265" class="html-bibr">17</a>,<a href="#B18-bioengineering-11-01265" class="html-bibr">18</a>,<a href="#B19-bioengineering-11-01265" class="html-bibr">19</a>,<a href="#B20-bioengineering-11-01265" class="html-bibr">20</a>,<a href="#B21-bioengineering-11-01265" class="html-bibr">21</a>,<a href="#B22-bioengineering-11-01265" class="html-bibr">22</a>,<a href="#B23-bioengineering-11-01265" class="html-bibr">23</a>,<a href="#B24-bioengineering-11-01265" class="html-bibr">24</a>,<a href="#B25-bioengineering-11-01265" class="html-bibr">25</a>,<a href="#B26-bioengineering-11-01265" class="html-bibr">26</a>,<a href="#B27-bioengineering-11-01265" class="html-bibr">27</a>,<a href="#B28-bioengineering-11-01265" class="html-bibr">28</a>,<a href="#B29-bioengineering-11-01265" class="html-bibr">29</a>,<a href="#B30-bioengineering-11-01265" class="html-bibr">30</a>,<a href="#B31-bioengineering-11-01265" class="html-bibr">31</a>,<a href="#B32-bioengineering-11-01265" class="html-bibr">32</a>,<a href="#B33-bioengineering-11-01265" class="html-bibr">33</a>,<a href="#B34-bioengineering-11-01265" class="html-bibr">34</a>,<a href="#B35-bioengineering-11-01265" class="html-bibr">35</a>,<a href="#B36-bioengineering-11-01265" class="html-bibr">36</a>,<a href="#B37-bioengineering-11-01265" class="html-bibr">37</a>,<a href="#B38-bioengineering-11-01265" class="html-bibr">38</a>,<a href="#B39-bioengineering-11-01265" class="html-bibr">39</a>,<a href="#B40-bioengineering-11-01265" class="html-bibr">40</a>,<a href="#B41-bioengineering-11-01265" class="html-bibr">41</a>,<a href="#B42-bioengineering-11-01265" class="html-bibr">42</a>,<a href="#B43-bioengineering-11-01265" class="html-bibr">43</a>,<a href="#B44-bioengineering-11-01265" class="html-bibr">44</a>,<a href="#B45-bioengineering-11-01265" class="html-bibr">45</a>,<a href="#B46-bioengineering-11-01265" class="html-bibr">46</a>,<a href="#B47-bioengineering-11-01265" class="html-bibr">47</a>,<a href="#B48-bioengineering-11-01265" class="html-bibr">48</a>,<a href="#B49-bioengineering-11-01265" class="html-bibr">49</a>,<a href="#B50-bioengineering-11-01265" class="html-bibr">50</a>,<a href="#B51-bioengineering-11-01265" class="html-bibr">51</a>,<a href="#B52-bioengineering-11-01265" class="html-bibr">52</a>,<a href="#B53-bioengineering-11-01265" class="html-bibr">53</a>,<a href="#B54-bioengineering-11-01265" class="html-bibr">54</a>,<a href="#B55-bioengineering-11-01265" class="html-bibr">55</a>,<a href="#B56-bioengineering-11-01265" class="html-bibr">56</a>,<a href="#B57-bioengineering-11-01265" class="html-bibr">57</a>,<a href="#B58-bioengineering-11-01265" class="html-bibr">58</a>,<a href="#B59-bioengineering-11-01265" class="html-bibr">59</a>,<a href="#B60-bioengineering-11-01265" class="html-bibr">60</a>,<a href="#B61-bioengineering-11-01265" class="html-bibr">61</a>,<a href="#B62-bioengineering-11-01265" class="html-bibr">62</a>,<a href="#B63-bioengineering-11-01265" class="html-bibr">63</a>].</p>
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<p>Proposed system of medical infrastructure that involves disease prediction using encoded grammar rules and QR codes for transmission.</p>
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<p>Example of QR code representation for influenza and COVID-19 variations: (<b>A</b>) critical COVID-19 (string—fchbtrdmlv); (<b>B</b>) critical influenza (string—fchbtr); (<b>C</b>) moderate COVID-19 (string—fchtdlv); (<b>D</b>) moderate influenza (string—fchbt); (<b>E</b>) Severe COVID-19 (string—fchbtdlmv); (<b>F</b>) severe influenza (fchtr).</p>
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<p>Activity diagram of the proposed grammar. The letters (a, b, c, d, etc.) provided as link labels are unrelated to the terminals of the grammar proposed and have been used to facilitate the attribute-based representation of this activity diagram.</p>
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<p>Activity diagram representing the extension of the proposed grammar for different diseases, incorporating the relevant test results, AI support, and patient’s medical history. The nosological rule that doctors have for using all the relevant information for diagnoses can be encoded as grammar and shared seamlessly among authorized personnel.</p>
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15 pages, 471 KiB  
Article
Azelastine Nasal Spray in Non-Hospitalized Subjects with Mild COVID-19 Infection: A Randomized Placebo-Controlled, Parallel-Group, Multicentric, Phase II Clinical Trial
by Peter Meiser, Michael Flegel, Frank Holzer, Dorothea Groß, Charlotte Steinmetz, Barbara Scherer, Rajesh Jain and CARVIN-II Study Group
Viruses 2024, 16(12), 1914; https://doi.org/10.3390/v16121914 - 13 Dec 2024
Viewed by 461
Abstract
Nasal spray treatments that inhibit the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) entry into nose and nasopharynx at early stages can be an appropriate approach to stop or delay the progression of the disease. We performed a prospective, randomized, double-blind, placebo-controlled, parallel-group, [...] Read more.
Nasal spray treatments that inhibit the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) entry into nose and nasopharynx at early stages can be an appropriate approach to stop or delay the progression of the disease. We performed a prospective, randomized, double-blind, placebo-controlled, parallel-group, multicentric, phase II clinical trial comparing the rate of hospitalization due to COVID-19 infection between azelastine 0.1% nasal spray and placebo nasal spray treatment groups. The study furthermore assessed the reduction in virus load in SARS-CoV-2-infected subjects estimated via quantitative reverse transcriptase polymerase chain reaction (RT-PCR) using nasopharyngeal swabs in both groups during the treatment period. A total of 294 subjects with mild COVID-19 infection were screened and randomized in a 1:1 ratio. There was no incidence of COVID-19-related hospitalization in either treatment group. Mean virus load was significantly reduced in both groups during the 11 treatment days as compared with baseline viral load values. The reduction in virus load in the azelastine 0.1% nasal spray group was significantly higher than the reduction in the placebo group at day 11 (log10 5.93 vs. log10 5.85 copies/mL, respectively, p = 0.0041). A total of 39 (32.0%) subjects in the azelastine 0.1% treatment group and 40 (31.0%) subjects in the placebo group reported 48 and 51 adverse events, respectively. It is therefore concluded that azelastine 0.1% nasal spray is an efficacious, safe, and well-tolerated treatment of mild COVID-19 infection. Full article
(This article belongs to the Special Issue Coronaviruses Pathogenesis, Immunity, and Antivirals)
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<p>Study Trial Disposition. Abbreviation: FAS = Full Analysis Set; PP = Per protocol; RT-PCR = Reverse Transcriptase Polymerase Chain Reaction; FAS: FAS Population included data from all randomized subjects regardless of the treatment actually received; Safety: All subjects who received at least one dose of randomized IMP, or Placebo and for whom any post-dose data were available included in the safety analysis set. Per Protocol: All subjects from safety analysis set completing the study without major protocol deviations and had their baseline RT-PCR report as positive were included in the PP analysis set.</p>
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15 pages, 476 KiB  
Article
Reported Adverse Events Following SARS-CoV-2 Vaccinations in the Canadian Province of Alberta and Associated Risk Factors: A Retrospective Cohort Study
by Yei Mansou, Mahalakshmi Kumaran, Gregory Farmer, Kyle Kemp, Hussain Usman, David Strong, George K. Mutwiri and Khokan C. Sikdar
Vaccines 2024, 12(12), 1409; https://doi.org/10.3390/vaccines12121409 - 13 Dec 2024
Viewed by 478
Abstract
Background/objectives: Coronavirus-19 (COVID-19) vaccines represent a significant milestone in the fight against coronavirus disease. Ongoing post-marketing surveillance and research are crucial for ensuring vaccine safety and effectiveness, aiding public health planning. Methods: Our retrospective cohort study included Albertans five years and [...] Read more.
Background/objectives: Coronavirus-19 (COVID-19) vaccines represent a significant milestone in the fight against coronavirus disease. Ongoing post-marketing surveillance and research are crucial for ensuring vaccine safety and effectiveness, aiding public health planning. Methods: Our retrospective cohort study included Albertans five years and older and vaccinated with at least one dose of an approved COVID-19 vaccine between 14 December 2020 and 30 April 2022. This epidemiological study aimed to determine the incidence of reported adverse events following immunization (AEFI) in Alberta and identify associated risk factors. Results: The study included 3,527,106 vaccinated Albertans who met the study inclusion criteria. A total of 2541 individuals (72.0 per 100,000) reported an AEFI, with 2759 adverse events, most of which occurred following the first dose of vaccine and within the first week post-vaccination. Of these, 70.4% were female, and the highest incidence was in the 35–54 age group. Given that mRNA vaccines were predominantly administered across Canada, we report AEFI rates (per 100,000 doses) for the mRNA vaccine brands at 27.7 for Pfizer and 40.7 for Moderna. Allergic events were the most frequently reported AEFI, followed by adenopathy. Logistic regression analysis indicated that sex (with females at higher risk), presence of comorbidities, days to symptom onset, vaccine type (mRNA vs. mixed doses), and the number of doses were significant factors associated with an AEFI event. Conclusions: Our study provides valuable information to guide policies surrounding COVID-19 vaccination. While the risk of serious adverse events was low in the population-based sample, further research is warranted to identify and investigate other possible risk factors that are still unknown. Full article
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<p>Study sample determination from the ImmARI Meditech databases (n = 3,527,106).</p>
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<p>Percent frequency of total AEFI for different types of AEFI events (n = 2759) by vaccine manufacturer.</p>
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<p>Days to onset of AEFI following mRNA vaccine administration of 2519 individuals. Notes: Of the 1818 reported adverse events for Pfizer, 3 adverse events did not have available onset days and, thus, were excluded from the above graph.</p>
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12 pages, 956 KiB  
Article
Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Pregnant Women Treated with Nirmatrelvir/Ritonavir (Paxlovid) Using Salivary Polymerase Chain Reaction: A Prospective Cohort Study
by Chun-Han Tseng, Chih-Wei Lin, Pei-Yin Tsai and Mei-Tsz Su
Microorganisms 2024, 12(12), 2566; https://doi.org/10.3390/microorganisms12122566 - 12 Dec 2024
Viewed by 417
Abstract
Objectives: We aim to study the relative viral load using salivary polymerase chain reaction among pregnant women treated with Paxlovid. Methods: Pregnant women with coronavirus disease 2019 were allocated to two groups: those receiving Paxlovid and those receiving no antiviral agents. We compared [...] Read more.
Objectives: We aim to study the relative viral load using salivary polymerase chain reaction among pregnant women treated with Paxlovid. Methods: Pregnant women with coronavirus disease 2019 were allocated to two groups: those receiving Paxlovid and those receiving no antiviral agents. We compared the nasopharyngeal and salivary relative viral loads and their changes in saliva specimens. Results: Among the thirty-seven pregnant women, seventeen received Paxlovid, and twenty received no antiviral agents. The viral cycle threshold value of saliva was significantly higher than that from nasopharynx, with a median ± interquartile range of 26.44 ± 7.68 versus 17.6 ± 9.6 in the Paxlovid group (p = 0.005). Following treatment, the median salivary viral load decreased by 13.40 cycle threshold values in the Paxlovid group (from a median of [Day 0 Ct] to [Day 4/5 Ct]), compared to a change of −1.59 cycle threshold values in the no-antiviral group (from a median of [Day 0 Ct] to [Day 4/5 Ct]) (p = 0.021). The detection rate of coronavirus disease 2019 using salivary polymerase chain reaction was 83.8% (31/37). Conclusions: This study showed that saliva is a useful diagnostic tool for coronavirus disease 2019 in pregnant women, and a significant decrease in the relative viral load of saliva was observed in those treated with Paxlovid. Full article
(This article belongs to the Section Virology)
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<p>Participant flow diagram. Abbreviation: PCR, polymerase chain reaction; COVID-19, coronavirus disease 2019.</p>
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<p>PCR Ct values of pregnant women with COVID-19. (<b>A</b>) The histogram illustrates the median and interquartile range of Ct values for pregnant women with COVID-19 in the Paxlovid group and the non-antiviral group. The white bars represent Ct values from nasopharyngeal specimens, while the colored bars represent Ct values from saliva specimens. (<b>B</b>) The plot displays individual Ct values from nasopharyngeal and saliva specimens in the Paxlovid group and the non-antiviral group. The values obtained from the nasopharyngeal and saliva specimens within individuals are connected by lines. An asterisk (*) indicates a <span class="html-italic">p</span>-value less than 0.05. Abbreviation: PCR, polymerase chain reaction; Ct, cycle threshold; COVID-19, coronavirus disease 2019.</p>
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<p>Change in saliva PCR Ct values. (<b>A</b>) The histogram illustrates the median and interquartile range of salivary PCR Ct values on Day 3 or Day 4 minus Ct value on Day 0 of the Paxlovid and the non-antiviral groups. (<b>B</b>) The plots display individual salivary PCR Ct values on Day 0 and on Day 3 or Day 4 in the Paxlovid and the non-antiviral groups. The Ct values on Day 0 and Day 3 or Day 4 within individuals are connected by lines. (<b>C</b>) The histogram illustrates the median and interquartile range of salivary PCR Ct values on Day 4 or Day 5 minus Ct value on Day 0 of the Paxlovid and the non-antiviral groups. (<b>D</b>) The plots display individual salivary PCR Ct values on Day 0 and on Day 4 or Day 5 in the Paxlovid and the non-antiviral groups. The Ct values on Day 0 and Day 4 or Day 5 within individuals are connected by lines. An asterisk (*) indicates a <span class="html-italic">p</span>-value less than 0.05. Abbreviation: Ct, cycle threshold; PCR, polymerase chain reaction.</p>
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16 pages, 4708 KiB  
Article
Receptor Binding Domain-Specific B Cell Memory Responses Among Individuals Vaccinated Against SARS-CoV-2
by Atharv Athavale, Anmol Gaur, Nafees Ahmed, Adarsh Subramaniam, Jyotsna Dandotiya, Sneha Raj, Santosh Kumar Upadhyay, Sweety Samal, Anil Kumar Pandey, Ramesh Chandra Rai and Amit Awasthi
Vaccines 2024, 12(12), 1396; https://doi.org/10.3390/vaccines12121396 - 12 Dec 2024
Viewed by 518
Abstract
Background: The COVID-19 pandemic prompted unprecedented vaccine development efforts against SARS-CoV-2. India, which was one of the countries most impacted by COVID-19, developed its indigenous vaccine in addition to utilizing the ones developed by other countries. While antibody levels and neutralizing antibody [...] Read more.
Background: The COVID-19 pandemic prompted unprecedented vaccine development efforts against SARS-CoV-2. India, which was one of the countries most impacted by COVID-19, developed its indigenous vaccine in addition to utilizing the ones developed by other countries. While antibody levels and neutralizing antibody titres are considered initial correlates of immune protection, long-term protection from the pathogen relies on memory B and T cells and their recall responses. In this regard, global research has primarily focused on mRNA-based vaccines. The studies on immune memory response, particularly B cell memory response induced by the vaccines given to Indians, remain relatively obscure. Methods: We assessed Receptor Binding Domain-specific memory B cells in the peripheral circulation and their ability to secrete antigen-specific antibodies among Indians vaccinated with Covaxin (BBV152), Covishield (AZD1222), Corbevax (BECOV2D), and Sputnik Light, as well as unvaccinated individuals. Results: Corbevax and Sputnik Light conferred better antibody-secreting cell (ASC) responses over time compared to other groups. Conclusions: These findings contribute to our understanding of vaccine-induced immune memory in the Indian population; providing insights that could inform future vaccine strategies. Full article
(This article belongs to the Section COVID-19 Vaccines and Vaccination)
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<p>IgG antibody levels against SARS-CoV-2 receptor-binding domain (RBD) of spike protein among unvaccinated and vaccinated participants.</p>
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<p>(<b>A</b>) Representative flow cytometry gating strategy for SARS-CoV-2 RBD-specific memory B cells (CD3<sup>−</sup>, CD19<sup>+</sup>, CD20<sup>+</sup>, IgD<sup>−</sup>, CD27<sup>+</sup>, RBD<sup>+</sup>). (<b>B</b>) Graphical representation comparing the percentage of RBD-specific memory B cells in vaccinated and unvaccinated participants [outliers removed using iterative Grubb’s test, alpha = 0.01].</p>
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<p>(<b>A</b>) Schematic ELISPOT assay plate map (created using BioRender). (<b>B</b>) Representative plate image showing the total and RBD-specific antibody-secreting cells (ASCs) among the cells collected from an unvaccinated and a vaccinated individual.</p>
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<p>Fraction of the RBD-specific ASCs (IgA, IgG, and IgM) among vaccinated versus unvaccinated individuals [outliers removed using iterative Grubb’s test, alpha = 0.01].</p>
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<p>Fraction of the RBD-specific ASCs (IgA, IgG, and IgM) to depict temporal changes (for participants vaccinated more than 6 months prior to sample collection): (<b>A</b>) among Corbevax-vaccinated versus unvaccinated individuals, (<b>B</b>) among Covaxin-vaccinated versus unvaccinated individuals, (<b>C</b>) among Covishield-vaccinated versus unvaccinated individuals, and (<b>D</b>) among Sputnik-Light-vaccinated versus unvaccinated individuals [Mann–Whitney U test; * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01; outliers were removed using iterative Grubb’s test, alpha = 0.01].</p>
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<p>Fraction of the RBD-specific ASCs (IgA, IgG, and IgM) to depict temporal changes (for participants vaccinated more than 6 months prior to sample collection): (<b>A</b>) among Corbevax-vaccinated versus unvaccinated individuals, (<b>B</b>) among Covaxin-vaccinated versus unvaccinated individuals, (<b>C</b>) among Covishield-vaccinated versus unvaccinated individuals, and (<b>D</b>) among Sputnik-Light-vaccinated versus unvaccinated individuals [Mann–Whitney U test; * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01; outliers were removed using iterative Grubb’s test, alpha = 0.01].</p>
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<p>Gender-disaggregated analysis of immune response and memory B cell response. (<b>A</b>) IgG antibody levels against SARS-CoV-2 spike RBD compared between male and female participants. (<b>B</b>) Percentage of RBD-specific memory B cells in the peripheral circulation of male and female participants segregated based on the vaccine given. (<b>C</b>) Percentage of RBD-specific IgA, IgG, and IgM spot-forming units in unvaccinated and vaccinated males and females.</p>
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27 pages, 1087 KiB  
Review
Oxidative Stress Induced by Antivirals: Implications for Adverse Outcomes During Pregnancy and in Newborns
by Bárbara Costa, Maria João Gouveia and Nuno Vale
Antioxidants 2024, 13(12), 1518; https://doi.org/10.3390/antiox13121518 - 12 Dec 2024
Viewed by 472
Abstract
Oxidative stress plays a critical role in various physiological and pathological processes, particularly during pregnancy, where it can significantly affect maternal and fetal health. In the context of viral infections, such as those caused by Human Immunodeficiency Virus (HIV) and severe acute respiratory [...] Read more.
Oxidative stress plays a critical role in various physiological and pathological processes, particularly during pregnancy, where it can significantly affect maternal and fetal health. In the context of viral infections, such as those caused by Human Immunodeficiency Virus (HIV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), oxidative stress may exacerbate complications by disrupting cellular function and immune responses. Antiviral drugs, while essential in managing these infections, can also contribute to oxidative stress, potentially impacting both the mother and the developing fetus. Understanding the mechanisms by which antivirals can contribute to oxidative stress and examination of pharmacokinetic changes during pregnancy that influence drug metabolism is essential. Some research indicates that antiretroviral drugs can induce oxidative stress and mitochondrial dysfunction during pregnancy, while other studies suggest that their use is generally safe. Therefore, concerns about long-term health effects persist. This review delves into the complex interplay between oxidative stress, antioxidant defenses, and antiviral therapies, focusing on strategies to mitigate potential oxidative damage. By addressing gaps in our understanding, we highlight the importance of balancing antiviral efficacy with the risks of oxidative stress. Moreover, we advocate for further research to develop safer, more effective therapeutic approaches during pregnancy. Understanding these dynamics is essential for optimizing health outcomes for both mother and fetus in the context of viral infections during pregnancy. Full article
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<p>Oxidative stress is a mechanism for adverse outcomes for pregnant and newborns. Viral infections and the use of antivirals/antiretrovirals are associated with oxidative stress, which can have significant implications for maternal and neonatal health (e.g., intrauterine growth restriction (IUGR)). Image adapted from Nüsken et al. [<a href="#B20-antioxidants-13-01518" class="html-bibr">20</a>].</p>
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<p>Illustration of the interplay between oxidative stress and antioxidant defenses.</p>
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19 pages, 4573 KiB  
Article
Comparing Different Data Partitioning Strategies for Segmenting Areas Affected by COVID-19 in CT Scans
by Anne de Souza Oliveira, Marly Guimarães Fernandes Costa, João Pedro Guimarães Fernandes Costa and Cícero Ferreira Fernandes Costa Filho
Diagnostics 2024, 14(24), 2791; https://doi.org/10.3390/diagnostics14242791 - 12 Dec 2024
Viewed by 344
Abstract
Background/Objectives: According to the World Health Organization, the gold standard for diagnosing COVID-19 is the Reverse Transcription Polymerase Chain Reaction (RT-PCR) test. However, to confirm the diagnosis in patients who have negative results but still show symptoms, imaging tests, especially computed tomography (CT), [...] Read more.
Background/Objectives: According to the World Health Organization, the gold standard for diagnosing COVID-19 is the Reverse Transcription Polymerase Chain Reaction (RT-PCR) test. However, to confirm the diagnosis in patients who have negative results but still show symptoms, imaging tests, especially computed tomography (CT), are used. In this study, using convolutional neural networks, we compared the following topics using manual and automatic lung segmentation methods: (1) the performance of an automatic segmentation of COVID-19 areas using two strategies for data partitioning, CT scans, and slice strategies; (2) the performance of an automatic segmentation method of COVID-19 when there was interobserver agreement between two groups of radiologists; and (3) the performance of the area affected by COVID-19. Methods: Two datasets and two deep neural network architectures are used to evaluate the automatic segmentation of lungs and COVID-19 areas. The performance of the U-Net architecture is compared with the performance of a new architecture proposed by the research group. Results: With automatic lung segmentation, the Dice metrics for the segmentation of the COVID-19 area were 73.01 ± 9.47% and 84.66 ± 5.41% for the CT-scan strategy and slice strategy, respectively. With manual lung segmentation, the Dice metrics for the automatic segmentation of COVID-19 were 74.47 ± 9.94% and 85.35 ± 5.41% for the CT-scan and the slice strategy, respectively. Conclusions: The main conclusions were as follows: COVID-19 segmentation was slightly better for the slice strategy than for the CT-scan strategy; a comparison of the performance of the automatic COVID-19 segmentation and the interobserver agreement, in a group of 7 CT scans, revealed that there was no statistically significant difference between any metric. Full article
(This article belongs to the Section Machine Learning and Artificial Intelligence in Diagnostics)
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<p>Graphs showing, for each CT scan of the dataset, the total number of slices, the number of slices containing the lung, and the number of slices containing regions with COVID-19. (<b>a</b>) Dataset 1; (<b>b</b>) Dataset 2. Blue bars: number of slices; yellow bars: number of slices with lung; red bars: number of slices with COVID-19.</p>
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<p>The steps of the methodology adopted in this work.</p>
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<p>Steps used in image preprocessing.</p>
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<p>Examples of slices of CT scans after preprocessing. From top to bottom, a slice, a lung mask, and a COVID-19 mask.</p>
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<p>Training and test sets obtained with the CT-scan strategy. Different colors represent different CT-scans.</p>
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<p>Training and test sets obtained with the slice strategy. Different colors represent different CT-scans.</p>
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<p>Convolutional neural network architecture used for semantic segmentation of lungs and COVID-19—U-Net [<a href="#B29-diagnostics-14-02791" class="html-bibr">29</a>].</p>
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<p>Convolutional neural network architecture used for semantic segmentation of COVID-19—CNN2.</p>
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<p>A comparison of the segmented areas of the lungs and COVID-19 patients in test sets, expressed as percentages of the CT-scan area, with the same area segmented by a radiologist: (<b>a</b>) CT-scan strategy; (<b>b</b>) slice strategy.</p>
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<p>The first row shows the lung and COVID-19 images segmented with U-Net trained with the CT scan strategy. The second row shows the lung and COVID-19 images segmented with U-Net trained with the slice strategy. Radiologist segmentation (Dataset 1) is shown in blue, whereas automatic segmentation is shown in red.</p>
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<p>(<b>a</b>) Original image; (<b>b</b>) agreement between radiologists. Radiologists’ segmentation in Dataset 1 is shown in blue, whereas radiologists’ segmentation in Dataset 2 is shown in yellow.</p>
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<p>(<b>a</b>) Original image with low contrast; (<b>b</b>) radiologist segmentation (Dataset 1) is shown in blue, whereas automatic segmentation is shown in red.</p>
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