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20 pages, 16392 KiB  
Article
A Novel Rapeseed Mapping Framework Integrating Image Fusion, Automated Sample Generation, and Deep Learning in Southwest China
by Ruolan Jiang, Xingyin Duan, Song Liao, Ziyi Tang and Hao Li
Land 2025, 14(1), 200; https://doi.org/10.3390/land14010200 (registering DOI) - 19 Jan 2025
Abstract
Rapeseed mapping is crucial for refined agricultural management and food security. However, existing remote sensing-based methods for rapeseed mapping in Southwest China are severely limited by insufficient training samples and persistent cloud cover. To address the above challenges, this study presents an automatic [...] Read more.
Rapeseed mapping is crucial for refined agricultural management and food security. However, existing remote sensing-based methods for rapeseed mapping in Southwest China are severely limited by insufficient training samples and persistent cloud cover. To address the above challenges, this study presents an automatic rapeseed mapping framework that integrates multi-source remote sensing data fusion, automated sample generation, and deep learning models. The framework was applied in Santai County, Sichuan Province, Southwest China, which has typical topographical and climatic characteristics. First, MODIS and Landsat data were used to fill the gaps in Sentinel-2 imagery, creating time-series images through the object-level processing version of the spatial and temporal adaptive reflectance fusion model (OL-STARFM). In addition, a novel spectral phenology approach was developed to automatically generate training samples, which were then input into the improved TS-ConvNeXt ECAPA-TDNN (NeXt-TDNN) deep learning model for accurate rapeseed mapping. The results demonstrated that the OL-STARFM approach was effective in rapeseed mapping. The proposed automated sample generation method proved effective in producing reliable rapeseed samples, achieving a low Dynamic Time Warping (DTW) distance (<0.81) when compared to field samples. The NeXt-TDNN model showed an overall accuracy (OA) of 90.12% and a mean Intersection over Union (mIoU) of 81.96% in Santai County, outperforming other models such as random forest, XGBoost, and UNet-LSTM. These results highlight the effectiveness of the proposed automatic rapeseed mapping framework in accurately identifying rapeseed. This framework offers a valuable reference for monitoring other crops in similar environments. Full article
19 pages, 7452 KiB  
Article
Responses of Typical Riparian Vegetation to Annual Variation of River Flow in a Semi-Arid Climate Region: Case Study of China’s Xiliao River
by Xiangzhao Yan, Wei Yang, Zaohong Pu, Qilong Zhang, Yutong Chen, Jiaqi Chen, Weiqi Xiang, Hongyu Chen, Yuyang Cheng and Yanwei Zhao
Land 2025, 14(1), 198; https://doi.org/10.3390/land14010198 (registering DOI) - 19 Jan 2025
Abstract
In semi-arid basins, riparian vegetation is an important part of the river ecosystem. However, with the decrease in river runoff caused by human activities and the continuous changes in climate, riparian vegetation has gradually degraded. To identify the main influencing factors of riparian [...] Read more.
In semi-arid basins, riparian vegetation is an important part of the river ecosystem. However, with the decrease in river runoff caused by human activities and the continuous changes in climate, riparian vegetation has gradually degraded. To identify the main influencing factors of riparian vegetation changes, we extracted the river flow indicators, climate indicators, and riparian vegetation indicators of a Xiliao River typical section from 1985 to 2020 in spring and summer, and established a random forest model to screen the key driving factors of riparian vegetation. Then, we simulated the response characteristics of riparian vegetation to the key driving factors in spring and summer based on nonlinear equations. The results showed that the contribution of river flow factors to riparian vegetation was higher than that of climate factors. In spring, the key driving factors of riparian vegetation were the average flow in May and the average flow from March to May; in summer, the key driving factors were the average flow in May, the maximum 90-day average flow, and the average flow from March to August. Among them, the average flow in May contributed more than 50% to the indicators of riparian vegetation in both spring and summer. The final conclusion is that in the optimal growth range of plants, increasing the base flow and pulse flow of rivers will promote seed germination and plant growth, but when the river flow exceeds this threshold, vegetation growth will stagnate. The research results improve the existing knowledge of the influencing factors of riparian vegetation in semi-arid basins, and provide a reference for improving the natural growth of riparian vegetation and guiding the ecological protection and restoration of rivers in semi-arid areas. Full article
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<p>Geographical location of study area and image of surrounding terrain.</p>
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<p>Significance analysis for vegetation indicators and driving factors in riparian zones in May. Abbreviations: <span class="html-italic">CP</span>, cumulative precipitation; <span class="html-italic">CSR</span>, cumulative solar radiation; <span class="html-italic">CST</span>, cumulative surface temperature; <span class="html-italic">FVC</span>, fractional vegetation cover; k<span class="html-italic">NDVI</span>, kernel normalized-difference vegetation index; <span class="html-italic">NPP</span>, net primary production.</p>
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<p>Significance analysis for vegetation indicators and driving factors in the riparian zones in August. Abbreviations: <span class="html-italic">CP</span>, cumulative precipitation; <span class="html-italic">CSR</span>, cumulative solar radiation; <span class="html-italic">CST</span>, cumulative surface temperature; <span class="html-italic">FVC</span>, fractional vegetation cover; k<span class="html-italic">NDVI</span>, kernel normalized-difference vegetation index; <span class="html-italic">NPP</span>, net primary production.</p>
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<p>Fitting results for relationship between riparian vegetation indicators and key driving factors in May: (<b>a</b>) kernel normalized-difference vegetation index (k<span class="html-italic">NDVI</span>); (<b>b</b>) fractional vegetation cover (<span class="html-italic">FVC</span>); (<b>c</b>) net primary production (<span class="html-italic">NPP</span>). All regressions were statistically significant (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Fitting results for relationships between riparian vegetation indicators and key driving factors in August: (<b>a</b>) kernel normalized-difference vegetation index (k<span class="html-italic">NDVI</span>); (<b>b</b>) fractional vegetation cover (<span class="html-italic">FVC</span>); (<b>c</b>) net primary production (<span class="html-italic">NPP</span>). All regressions were statistically significant (<span class="html-italic">p</span> &lt; 0.05).</p>
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23 pages, 25322 KiB  
Article
Prediction of Winter Wheat Parameters with Planet SuperDove Imagery and Explainable Artificial Intelligence
by Gabriele De Carolis, Vincenzo Giannico, Leonardo Costanza, Francesca Ardito, Anna Maria Stellacci, Afwa Thameur, Sergio Ruggieri, Sabina Tangaro, Marcello Mastrorilli, Nicola Sanitate and Simone Pietro Garofalo
Agronomy 2025, 15(1), 241; https://doi.org/10.3390/agronomy15010241 (registering DOI) - 19 Jan 2025
Abstract
This study investigated the application of high-resolution satellite imagery from SuperDove satellites combined with machine learning algorithms to estimate the spatiotemporal variability of some winter wheat parameters, including the relative leaf chlorophyll content (RCC), relative water content (RWC), and aboveground dry matter (DM). [...] Read more.
This study investigated the application of high-resolution satellite imagery from SuperDove satellites combined with machine learning algorithms to estimate the spatiotemporal variability of some winter wheat parameters, including the relative leaf chlorophyll content (RCC), relative water content (RWC), and aboveground dry matter (DM). The research was carried out within an experimental field in Southern Italy during the 2024 growing season. Different machine learning (ML) algorithms were trained and compared using spectral band data and calculated vegetation indices (VIs) as predictors. Model performance was assessed using R2 and RMSE. The ML models tested were random forest (RF), support vector regressor (SVR), and extreme gradient boosting (XGB). RF outperformed the other ML algorithms in the prediction of RCC when using VIs as predictors (R2 = 0.81) and in the prediction of the RWC and DM when using spectral bands data as predictors (R2 = 0.71 and 0.87, respectively). Model explainability was assessed with the SHAP method. A SHAP analysis highlighted that GNDVI, Cl1, and NDRE were the most important VIs for predicting RCC, while yellow and red bands were the most important for DM prediction, and yellow and nir bands for RWC prediction. The best model found for each target was used to model its seasonal trend and produce a variability map. This approach highlights the potential of integrating ML and high-resolution satellite imagery for the remote monitoring of wheat, which can support sustainable farming practices. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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<p>The location of the experimental farm, south of Italy (<b>A</b>); random points (green dots) where the relative leaf chlorophyll content, relative water content, and aboveground dry matter were determined within the field (red line) (<b>B</b>) (OpenStreetMap Contributors, 2024; Map data© 2015 Google).</p>
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<p>Frequency distributions for the ground truth data acquired for this study (relative leaf chlorophyll content, RCC; relative water content, RWC; aboveground dry matter, DM) with their respective kurtosis (K) and skewness (S) values.</p>
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<p>The framework of the study for the prediction of the relative leaf chlorophyll content, relative water content, and aboveground dry matter.</p>
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<p>Variation in air vapor pressure deficit (air VPD), minimum, mean, and maximum temperatures during wheat growing season (<b>A</b>); variation in crop evapotranspiration (ETc) and rainfall during wheat growing season (<b>B</b>).</p>
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<p>A map (<b>A</b>) and frequency plot of the pixel value (<b>B</b>) of the Brightness Index of the field before sowing (19 November 2023).</p>
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<p>SHAP summary plots for the random forest model for the prediction of the relative leaf chlorophyll content (RCC, <b>A</b>); aboveground dry matter (DM, <b>B</b>); and relative water content (RWC, <b>C</b>). The graphs report the distribution of SHAP values for each feature, with the dots’ colors changing depending on the features’ values. A positive SHAP value indicates a positive impact on the model, and a negative SHAP value indicates a negative impact on the model.</p>
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<p>The trends in the mean and standard deviation of the observed and predicted variables: (<b>A</b>) the relative chlorophyll content, (<b>B</b>) aboveground dry matter, and (<b>C</b>) relative water content. The observed and predicted values are compared on the same DOYs for each parameter. Moreover, predictions were extended to additional DOYs, namely 61, 73, and 104 in the case of RCC and 104 in the case of DM and RWC.</p>
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<p>Predictive maps of the relative leaf chlorophyll content for the DOY (day of the year) of ground measurements, obtained by applying the random forest model trained with vegetation indices.</p>
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<p>Predictive maps of the aboveground dry matter for the DOY (day of the year) of ground measurements, obtained by applying the random forest model trained with SuperDove spectral bands.</p>
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<p>Predictive maps of the relative water content for the DOY (day of the year) of ground measurements, obtained by applying the random forest model trained with SuperDove spectral bands.</p>
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15 pages, 9308 KiB  
Article
Climate Change Drives the Adaptive Distribution and Habitat Fragmentation of Betula albosinensis Forests in China
by Huayong Zhang, Yue Zhou, Xiande Ji, Zhongyu Wang and Zhao Liu
Forests 2025, 16(1), 184; https://doi.org/10.3390/f16010184 (registering DOI) - 19 Jan 2025
Abstract
Betula albosinensis serves as an important constructive and afforestation tree species in mountainous areas. Its suitable habitat and habitat quality are highly vulnerable to the climate. However, few studies have centered on the shrinkage, expansion, and habitat fragmentation of B. albosinensis forests under [...] Read more.
Betula albosinensis serves as an important constructive and afforestation tree species in mountainous areas. Its suitable habitat and habitat quality are highly vulnerable to the climate. However, few studies have centered on the shrinkage, expansion, and habitat fragmentation of B. albosinensis forests under climate change. In this study, the Random Forest model was employed to predict current and future trends of shrinking and expanding of B. albosinensis, while a composite landscape index was utilized to evaluate the habitat fragmentation in the highly suitable habitats of B. albosinensis. The results indicated that suitable habitats for B. albosinensis were primarily concentrated in the vicinities of the Qinling, Qilian, and Hengduan Mountains, situated in western China. The most influential factor affecting the distribution of B. albosinensis was temperature seasonality (Bio4). In future scenarios, the center of distribution of B. albosinensis was projected to shift towards the west and higher altitudes. The total suitable habitats of B. albosinensis were anticipated to expand under the scenarios of SSP370 and SSP585 in the 2090s, while they were expected to contract under the remaining scenarios. Although these results indicated that the suitable areas of habitat for B. albosinensis were relatively intact on the whole, fragmentation increased with climate change, with the highest degree of fragmentation observed under the SSP585 scenario in the 2090s. The findings of this study provide a foundation for the protection of montane vegetation, the maintenance of montane biodiversity, and the evaluation of species’ habitat fragmentation. Full article
(This article belongs to the Section Forest Ecology and Management)
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<p>The contribution rate of environmental variables in the RF model.</p>
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<p>Potential suitable habitat of <span class="html-italic">B. albosinensis</span> under the current climate in China.</p>
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<p>Distribution of <span class="html-italic">B. albosinensis</span> forests under the SSP126 (<b>a</b>,<b>d</b>), SSP370 (<b>b</b>,<b>e</b>), and SSP585 (<b>c</b>,<b>f</b>) scenarios in the 2050s (<b>a</b>–<b>c</b>) and 2090s (<b>d</b>–<b>f</b>) in China.</p>
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<p>Shrinkage and expansion of <span class="html-italic">B. albosinensis’s</span> suitable habitat in the 2050s (<b>a</b>) and 2090s (<b>b</b>).</p>
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<p>Spatial distribution of fragmentation in highly suitable habitats of <span class="html-italic">B. albosinensis</span> under current climate in China.</p>
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<p>Spatial distribution of fragmentation in highly suitable habitat of <span class="html-italic">B. albosinensis</span> under the SSP126 (<b>a</b>,<b>d</b>), SSP370 (<b>b</b>,<b>e</b>), and SSP585 (<b>c</b>,<b>f</b>) scenarios in the 2050s (<b>a</b>–<b>c</b>) and 2090s (<b>d</b>–<b>f</b>) in China.</p>
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<p>Percentage of fragmentation at each level under different scenarios.</p>
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12 pages, 878 KiB  
Communication
Depression Recognition Using Daily Wearable-Derived Physiological Data
by Xinyu Shui, Hao Xu, Shuping Tan and Dan Zhang
Sensors 2025, 25(2), 567; https://doi.org/10.3390/s25020567 (registering DOI) - 19 Jan 2025
Abstract
The objective identification of depression using physiological data has emerged as a significant research focus within the field of psychiatry. The advancement of wearable physiological measurement devices has opened new avenues for the identification of individuals with depression in everyday-life contexts. Compared to [...] Read more.
The objective identification of depression using physiological data has emerged as a significant research focus within the field of psychiatry. The advancement of wearable physiological measurement devices has opened new avenues for the identification of individuals with depression in everyday-life contexts. Compared to other objective measurement methods, wearables offer the potential for continuous, unobtrusive monitoring, which can capture subtle physiological changes indicative of depressive states. The present study leverages multimodal wristband devices to collect data from fifty-eight participants clinically diagnosed with depression during their normal daytime activities over six hours. Data collected include pulse wave, skin conductance, and triaxial acceleration. For comparison, we also utilized data from fifty-eight matched healthy controls from a publicly available dataset, collected using the same devices over equivalent durations. Our aim was to identify depressive individuals through the analysis of multimodal physiological measurements derived from wearable devices in daily life scenarios. We extracted static features such as the mean, variance, skewness, and kurtosis of physiological indicators like heart rate, skin conductance, and acceleration, as well as autoregressive coefficients of these signals reflecting the temporal dynamics. Utilizing a Random Forest algorithm, we distinguished depressive and non-depressive individuals with varying classification accuracies on data aggregated over 6 h, 2 h, 30 min, and 5 min segments, as 90.0%, 84.7%, 80.1%, and 76.0%, respectively. Our results demonstrate the feasibility of using daily wearable-derived physiological data for depression recognition. The achieved classification accuracies suggest that this approach could be integrated into clinical settings for the early detection and monitoring of depressive symptoms. Future work will explore the potential of these methods for personalized interventions and real-time monitoring, offering a promising avenue for enhancing mental health care through the integration of wearable technology. Full article
(This article belongs to the Special Issue Wearable Technologies and Sensors for Healthcare and Wellbeing)
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<p>(<b>a</b>) The wristband device; (<b>b</b>) the flowchart of data analysis. The classification models include Random Forest (RF), Support Vector Machine (SVM), K-Nearest Neighbors (KNN), and Linear Discriminant Analysis (LDA).</p>
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<p>The overall AIC criterion of all participants across AR models with different indexes. Three subplots, respectively, represented the AIC in AR models based on HR, SC, and ACC signals.</p>
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<p>The violin plot shows the distribution of classification accuracies based on bootstrapped RF models in the ALL-feature condition. In each bootstrap process, data segments were randomly selected and split (of training and test sets) in the 5 min, 30 min, 2 h, and 6 h conditions. Each dot showed the averaged 5-fold accuracy from one out of 1000 bootstrap steps. The dotted line represented the 95% interval of the Random condition results.</p>
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26 pages, 3274 KiB  
Article
Bulk Low-Inertia Power Systems Adaptive Fault Type Classification Method Based on Machine Learning and Phasor Measurement Units Data
by Mihail Senyuk, Svetlana Beryozkina, Inga Zicmane, Murodbek Safaraliev, Viktor Klassen and Firuz Kamalov
Mathematics 2025, 13(2), 316; https://doi.org/10.3390/math13020316 (registering DOI) - 19 Jan 2025
Viewed by 100
Abstract
This research focuses on developing and testing a method for classifying disturbances in power systems using machine learning algorithms and phasor measurement unit (PMU) data. To enhance the speed and accuracy of disturbance classification, we employ a range of ensemble machine learning techniques, [...] Read more.
This research focuses on developing and testing a method for classifying disturbances in power systems using machine learning algorithms and phasor measurement unit (PMU) data. To enhance the speed and accuracy of disturbance classification, we employ a range of ensemble machine learning techniques, including Random forest, AdaBoost, Extreme gradient boosting (XGBoost), and LightGBM. The classification method was evaluated using both synthetic data, generated from transient simulations of the IEEE24 test system, and real-world data from actual transient events in power systems. Among the algorithms tested, XGBoost achieved the highest classification accuracy, with 96.8% for synthetic data and 85.2% for physical data. Additionally, this study investigates the impact of data sampling frequency and calculation window size on classification performance. Through numerical experiments, we found that increasing the signal sampling rate beyond 5 kHz and extending the calculation window beyond 5 ms did not significantly improve classification accuracy. Full article
(This article belongs to the Special Issue Mathematical and Computational Methods for Mechanics and Engineering)
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<p>Illustrations of the technique for selecting nodes nearby to the SC site.</p>
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<p>Flowchart for training methodology of ML method for SC identification.</p>
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<p>Flowchart of using a trained ML algorithm for EPS EC purposes.</p>
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<p>IEEE24 model diagram.</p>
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<p>WG1–WG3 active powers.</p>
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<p>Fragment of initial mathematical data.</p>
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<p>Distribution of the Accuracy value for the XGBoost algorithm when varying the size of the calculation window and the sampling frequency of the source data.</p>
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<p>Distribution of the F value for the XGBoost algorithm when varying the size of the calculation window and the sampling frequency of the source data.</p>
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<p>Diagram of the test physical system.</p>
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<p>Instantaneous current signals.</p>
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<p>Instantaneous voltage signals.</p>
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23 pages, 4962 KiB  
Article
Action Recognition in Basketball with Inertial Measurement Unit-Supported Vest
by Hamza Sonalcan, Enes Bilen, Bahar Ateş and Ahmet Çağdaş Seçkin
Sensors 2025, 25(2), 563; https://doi.org/10.3390/s25020563 (registering DOI) - 19 Jan 2025
Viewed by 91
Abstract
In this study, an action recognition system was developed to identify fundamental basketball movements using a single Inertial Measurement Unit (IMU) sensor embedded in a wearable vest. This study aims to enhance basketball training by providing a high-performance, low-cost solution that minimizes discomfort [...] Read more.
In this study, an action recognition system was developed to identify fundamental basketball movements using a single Inertial Measurement Unit (IMU) sensor embedded in a wearable vest. This study aims to enhance basketball training by providing a high-performance, low-cost solution that minimizes discomfort for athletes. Data were collected from 21 collegiate basketball players, and movements such as dribbling, passing, shooting, layup, and standing still were recorded. The collected IMU data underwent preprocessing and feature extraction, followed by the application of machine learning algorithms including KNN, decision tree, Random Forest, AdaBoost, and XGBoost. Among these, the XGBoost algorithm with a window size of 250 and a 75% overlap yielded the highest accuracy of 96.6%. The system demonstrated superior performance compared to other single-sensor systems, achieving an overall classification accuracy of 96.9%. This research contributes to the field by presenting a new dataset of basketball movements, comparing the effectiveness of various feature extraction and machine learning methods, and offering a scalable, efficient, and accurate action recognition system for basketball. Full article
(This article belongs to the Special Issue Inertial Measurement Units in Sport—2nd Edition)
17 pages, 3900 KiB  
Article
A Deep Learning Approach for Mental Fatigue State Assessment
by Jiaxing Fan, Lin Dong, Gang Sun and Zhize Zhou
Sensors 2025, 25(2), 555; https://doi.org/10.3390/s25020555 (registering DOI) - 19 Jan 2025
Viewed by 143
Abstract
This study investigates mental fatigue in sports activities by leveraging deep learning techniques, deviating from the conventional use of heart rate variability (HRV) feature analysis found in previous research. The study utilizes a hybrid deep neural network model, which integrates Residual Networks (ResNet) [...] Read more.
This study investigates mental fatigue in sports activities by leveraging deep learning techniques, deviating from the conventional use of heart rate variability (HRV) feature analysis found in previous research. The study utilizes a hybrid deep neural network model, which integrates Residual Networks (ResNet) and Bidirectional Long Short-Term Memory (Bi-LSTM) for feature extraction, and a transformer for feature fusion. The model achieves an impressive accuracy of 95.29% in identifying fatigue from original ECG data, 2D spectral characteristics and physiological information of subjects. In comparison to traditional methods, such as Support Vector Machines (SVMs) and Random Forests (RFs), as well as other deep learning methods, including Convolutional Neural Networks (CNNs) and Long Short-Term Memory (LSTM), the proposed approach demonstrates significantly improved experimental outcomes. Overall, this study offers a promising solution for accurately recognizing fatigue through the analysis of physiological signals, with potential applications in sports and physical fitness training contexts. Full article
(This article belongs to the Special Issue Virtual Reality and Sensing Techniques for Human)
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<p>Workflow of our method. Mental fatigue stimulations (<b>b</b>) are applied to subjects (<b>a</b>). ECG data are then collected and labelled (<b>c</b>), followed by denoising and standardization (<b>d</b>), and then segmentation (<b>e</b>). The preprocessed data are subsequently converted into 2D images using STFT (<b>f</b>). Features are extracted from the 1D signal segments, 2D images, and subject-specific information (<b>g</b>) using ResNet and Bi-LSTM. Finally, the results are inferred through a transformer by fusing the features (<b>h</b>).</p>
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<p>Stroop task description and three example screens.</p>
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<p>Data preprocessing. The denoised ECG signal (<b>a</b>) is segmented into 1D time series (<b>b</b>) and converted into 2D spectrograms (<b>c</b>).</p>
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<p>Feature extraction of time series data (<b>a</b>), STFT spectrograms (<b>b</b>) and physiological information (<b>c</b>).</p>
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<p>Feature fusion using a transformer encoder.</p>
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<p>Comparison between the original ECG signal and the preprocessed signal. (<b>a</b>) The original ECG signal data, (<b>b</b>) ECG signal data after denoising, and (<b>c</b>) the baseline-aligned ECG signal after applying the Standard Scaler.</p>
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<p>The segmented ECG signal segment is passed through the STFT spectrograms. Each of the figures above displays a time series data segment with 130 points, which represents a 1-second interval.</p>
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19 pages, 918 KiB  
Article
Analyzing Key Features of Open Source Software Survivability with Random Forest
by Sohee Park and Gihwon Kwon
Appl. Sci. 2025, 15(2), 946; https://doi.org/10.3390/app15020946 (registering DOI) - 18 Jan 2025
Viewed by 355
Abstract
Open source software (OSS) projects rely on voluntary contributions, but their long-term survivability depends on sustained community engagement and effective problem-solving. Survivability, critical for maintaining project quality and trustworthiness, is closely linked to issue activity, as unresolved issues reflect a decline in maintenance [...] Read more.
Open source software (OSS) projects rely on voluntary contributions, but their long-term survivability depends on sustained community engagement and effective problem-solving. Survivability, critical for maintaining project quality and trustworthiness, is closely linked to issue activity, as unresolved issues reflect a decline in maintenance capacity and problem-solving ability. Thus, analyzing issue retention rates provides valuable insights into a project’s health. This study evaluates OSS survivability by identifying the features that influence issue activity and analyzing their relationships with survivability. Kaplan–Meier survival analysis is employed to quantify issue activity and visualize trends in unresolved issue rates, providing a measure of project maintenance dynamics. A random forest model is used to examine the relationships between project features—such as popularity metrics, community engagement, code complexity, and project age—and issue retention rates. The results show that stars significantly reduce issue retention rates, with rates dropping from 0.62 to 0.52 as stars increase to 4000, while larger codebases, higher cyclomatic complexity, and older project age are associated with unresolved issue rates, rising by up to 15%. Forks also have a nonlinear impact, initially stabilizing retention rates but increasing unresolved issues as contributions became unmanageable. By identifying these critical factors and quantifying their impacts, this research offers actionable insights for OSS project managers to enhance project survivability and address key maintenance challenges, ensuring sustainable long-term success. Full article
20 pages, 6192 KiB  
Article
Novel Assignment of Gene Markers to Hematological and Immune Cells Based on Single-Cell Transcriptomics
by Enrique De La Rosa, Natalia Alonso-Moreda, Alberto Berral-González, Elena Sánchez-Luis, Oscar González-Velasco, José Manuel Sánchez-Santos and Javier De Las Rivas
Int. J. Mol. Sci. 2025, 26(2), 805; https://doi.org/10.3390/ijms26020805 (registering DOI) - 18 Jan 2025
Viewed by 341
Abstract
There are many different cells that perform highly specialized functions in the human hematological and immune systems. Due to the relevance of their activity, in this work we investigated the cell types and subtypes that form this complex system, using single-cell RNA sequencing [...] Read more.
There are many different cells that perform highly specialized functions in the human hematological and immune systems. Due to the relevance of their activity, in this work we investigated the cell types and subtypes that form this complex system, using single-cell RNA sequencing (scRNA-seq) to dissect and assess the markers that best define each cell population. We first developed an optimized computational workflow for analyzing large scRNA-seq datasets. We then used it to find gene markers of the different cell types present in bone marrow (BM) and peripheral blood (PB). We analyzed three different single-cell datasets to find specific cell markers using this strategy: first, we searched in the CD marker genes and then in the genes encoding membrane proteins and finally in all detected protein-coding genes. This allowed us not only to confirm known CDs that best mark some cell types (e.g., monocytes, B cells, NK cells, etc.) but also to test the ability of new genes to distinguish specific cell types. Finally, we applied a machine learning method (Random Forest) to test the accuracy of the different markers we found. As a result of all this work, we have found and propose specific and robust gene signatures to identify different types and subtypes of hematological and immune cells. Full article
(This article belongs to the Special Issue Molecular Biomarkers in Cancer and Their Applications 2.0)
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<p>Workflow applied to the analysis of the single-cell RNA-seq datasets studied in this work. The first part (from 1.1 to 1.5) corresponds to the experimental steps from the biological samples till obtaining the raw expression counts per cell and per gene. These steps include the following: the single-cell isolation (using 10x Genomics Chromium platform), the single-cell RNA sequencing (using Illumina sequencers HiSeq or NovaSeq), the quantification of the reads, the alignment of the reads to the reference genome or transcriptome, and the calculation of the raw counts data matrix per cell and per gene. The second part (from 2.1 to 2.7) includes the actual analytical bioinformatics section of the workflow, starting with quality control and filtering, normalization, scaling, and dimensionality reduction, clustering for the identification of different cell populations, and generation of the Seurat single-cell object containing all the output data (i.e., the quantification of gene expression per cell, the clusters or groups of cells found, and the phenotypic information of the samples). We applied the second part of the workflow described to generate the Seurat objects for each dataset.</p>
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<p>Scheme showing (<b>a</b>) the lists of human genes that are used in this work, indicating their size and the overlap between them: 5518 genes predicted to encode membrane proteins; 369 genes encoding known CD markers; and 363 genes corresponding to the union of unique genes from the TOP 20 most differentially expressed genes found in each of the 27 clusters of Dataset 1. The Venn diagram shows the intersections between these 3 sets of genes. Part (<b>b</b>) of this figure schematically shows all the hematological and immune cell types that we worked with in this study and that were detected in the 3 datasets (Datasets 1, 2, and 3). The cell types identified in each of these datasets are marked with a colored square: <span class="html-italic">green</span> squares for Dataset 1, which includes 27 cell types; <span class="html-italic">black</span> squares for Dataset 2, which includes 19 cell types; and <span class="html-italic">blue</span> squares for Dataset 3, which includes 12 cell types. The cells are organized into lineages: myeloid cells, progenitor cells, and lymphoid cells; and from less specific to more specific cell types (from top to bottom). The legend at the bottom gives the names of all the specific cell types studied. Finally, colored background panels with a red square inside are included in the figure to mark the cell types studied at different levels of dissection or cell type separation. Thus, three main levels are considered: Level 1, which includes 7 different cell types in the <span class="html-italic">grey</span>-colored panels; Level 2, which includes 16 cell types in the <span class="html-italic">green</span>-colored panels; and Level 3, which includes 27 different cell types and subtypes in the cream colored panels. This largest number of cell types (27 in Level 3) is the same defined in Dataset 1, because that study included experimental validation of the different cell populations and was therefore used as a reference in this work.</p>
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<p>Single-cell tSNE and UMAP maps of three complementary sample cell sets obtained from peripheral blood mononuclear cells (PBMCs) and bone marrow mononuclear cells (BMMCs). (<b>a</b>) Three tSNE plots corresponding to the analysis of Dataset 1, which contains 7643 cells and identifies clusters corresponding to 27 different cell types. The three plots include clusters of different cell populations (i.e., different cell types or subtypes) generated using different numbers of genes: 369 CD markers (gene List 1); 369 CD markers plus 63 genes encoding membrane proteins (List 2); and all expressed genes detected in the cells of this dataset (List 3). (<b>b</b>) Three UMAP plots corresponding to the analysis of Dataset 2, which contains 90,653 cells and identifies clusters corresponding to 19 different cell types. The three plots were generated in the same way as indicated above, using different numbers of genes: List 1; List 2; and List 3. (<b>c</b>) Three UMAP plots corresponding to the analysis of Dataset 3, which contains 10,985 cells and identifies clusters corresponding to 12 different cell types. The three plots were generated in the same way as indicated above, using different numbers of genes: List 1; List 2; and List 3.</p>
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<p>Tables on the left: selected top markers for 15 cell types: (i) 3 types of progenitor cells; (ii) 7 types of lymphoid lineage cells; and (iii) 5 types of myeloid lineage cells. Right panels: for each group of cell types, three tSNE plots corresponding to Dataset 1, showing the expression of 3 selected genes (marked in red or yellow according to the scales included in each plot). The figure also shows, in red, green, or blue, the source list of the genes (i.e., the set in which the genes are included: the CD set, the MP set, or the set that is all other genes but not CDs or MPs).</p>
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<p>Summary of the Random Forest results obtained with the 4 gene signatures tested: (<b>a</b>) Table describing the 4 gene sets used in the Random Forest and the results, at 3 levels, obtained for overall accuracy (mean and sd); (<b>b</b>) Confusion matrix obtained after 10 runs of the test to predict the cell-type label of each of the 27 clusters of cells present in the single-cell analysis of Dataset 1.</p>
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<p>Trajectory analysis of the cells from supervised Dataset 1. (<b>a</b>) Single-cell t-SNE map showing populations of 27 cell types and subtypes. (<b>b</b>) The same single-cell t-SNE map with a color gradient indicating the differentiation trend: from dark purple for progenitor phenotypes to light green and yellow for differentiated phenotypes. (<b>c</b>) The same single-cell t-SNE map, now with the major cell clusters (15 groups) highlighted in color and the trajectories found by <span class="html-italic">TSCAN</span> indicated by black lines. (<b>d</b>) Expression profiles of three gene markers (CD34, CD3e, and CD20) that reflect the trajectories found corresponding to the myeloid lineage, the lymphoid lineage till B and plasma cells, and the lymphoid lineage till T cells and NK cells.</p>
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16 pages, 2755 KiB  
Article
Research on Transformer Temperature Early Warning Method Based on Adaptive Sliding Window and Stacking
by Pan Zhang, Qian Zhang, Huan Hu, Huazhi Hu, Runze Peng and Jiaqi Liu
Electronics 2025, 14(2), 373; https://doi.org/10.3390/electronics14020373 (registering DOI) - 18 Jan 2025
Viewed by 275
Abstract
This paper proposes a transformer temperature early warning method based on an adaptive sliding window and stacking ensemble learning algorithm, aiming to improve the accuracy and robustness of temperature prediction. The transformer temperature early warning system is crucial for ensuring the safe operation [...] Read more.
This paper proposes a transformer temperature early warning method based on an adaptive sliding window and stacking ensemble learning algorithm, aiming to improve the accuracy and robustness of temperature prediction. The transformer temperature early warning system is crucial for ensuring the safe operation of the power system, and temperature prediction, as the foundation of early warning, directly affects the early warning effectiveness. This paper analyzes the characteristics of transformer temperature using support vector regression, random forest, and gradient boosting regression as base learners and ridge regression as the meta-learner to construct a stacking model. At the same time, Bayesian optimization is used to automatically adjust the sliding window size, achieving adaptive sliding window processing. The experimental results indicate that the temperature prediction method based on adaptive sliding window and stacking significantly reduces prediction errors, enhances the model’s adaptability and generalization ability, and provides more reliable technical support for transformer fault warning. Full article
(This article belongs to the Special Issue Power Electronics in Hybrid AC/DC Grids and Microgrids)
17 pages, 2396 KiB  
Article
Experimental Setup and Machine Learning-Based Prediction Model for Electro-Cyclone Filter Efficiency: Filtering of Ship Particulate Matter Emission
by Aleksandr Šabanovič, Jonas Matijošius, Dragan Marinković, Aleksandras Chlebnikovas, Donatas Gurauskis, Johannes H. Gutheil and Artūras Kilikevičius
Atmosphere 2025, 16(1), 103; https://doi.org/10.3390/atmos16010103 (registering DOI) - 18 Jan 2025
Viewed by 242
Abstract
Ship emissions significantly impact air quality, particularly in coastal and port regions, contributing to elevated concentrations of PM2.5, and PM10, with varying effects observed across different locations. This study investigates the effectiveness of emission control policies, inland and port-specific [...] Read more.
Ship emissions significantly impact air quality, particularly in coastal and port regions, contributing to elevated concentrations of PM2.5, and PM10, with varying effects observed across different locations. This study investigates the effectiveness of emission control policies, inland and port-specific contributions to air pollution, and the health risks posed by particulate matter (PM). A regression discontinuity model at Ningbo Port revealed that ship activities show moderate PM2.5 and PM10 variations. In Busan Port, container ships accounted for the majority of emissions, with social costs from pollutants estimated at USD 31.55 million annually. Inland shipping near the Yangtze River demonstrated significant PM contributions, emphasizing regional impacts. Health risks from PM2.5, a major global toxic pollutant, were highlighted, with links to respiratory, cardiovascular, and cognitive disorders. Advances in air purification technologies, including hybrid electrostatic filtration systems, have shown promising efficiency in removing submicron particles and toxic gases, reducing energy costs. In this paper, a random forest machine learning model developed to predict particulate concentrations post-cleaning demonstrated robust performance (MAE = 0.49 P/cm3, R2 = 0.97). These findings underscore the critical need for stringent emission controls, innovative filtration systems, and comprehensive monitoring to mitigate the environmental and health impacts of ship emissions. Full article
(This article belongs to the Special Issue Shipping Emissions and Air Pollution (2nd Edition))
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<p>Actual vs. predicted concentration after cleaning.</p>
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<p>Actual vs. predicted concentration after cleaning by particle dosage speed (<b>a</b>) 2 mm/h; (<b>b</b>) 4 mm/h; (<b>c</b>) 8 mm/h; (<b>d</b>) 16 mm/h.</p>
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<p>Actual vs. predicted concentration after cleaning by particle dosage speed (<b>a</b>) 2 mm/h; (<b>b</b>) 4 mm/h; (<b>c</b>) 8 mm/h; (<b>d</b>) 16 mm/h.</p>
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<p>Residuals of predictions by dosage speed: (<b>a</b>) 2 mm/h; (<b>b</b>) 4 mm/h; (<b>c</b>) 8 mm/h; (<b>d</b>) 16 mm/h.</p>
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<p>Residuals of predictions by dosage speed: (<b>a</b>) 2 mm/h; (<b>b</b>) 4 mm/h; (<b>c</b>) 8 mm/h; (<b>d</b>) 16 mm/h.</p>
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28 pages, 2782 KiB  
Article
Integrating Remote Sensing and Soil Features for Enhanced Machine Learning-Based Corn Yield Prediction in the Southern US
by Sayantan Sarkar, Javier M. Osorio Leyton, Efrain Noa-Yarasca, Kabindra Adhikari, Chad B. Hajda and Douglas R. Smith
Sensors 2025, 25(2), 543; https://doi.org/10.3390/s25020543 (registering DOI) - 18 Jan 2025
Viewed by 236
Abstract
Efficient and reliable corn (Zea mays L.) yield prediction is important for varietal selection by plant breeders and management decision-making by growers. Unlike prior studies that focus mainly on county-level or controlled laboratory-scale areas, this study targets a production-scale area, better representing [...] Read more.
Efficient and reliable corn (Zea mays L.) yield prediction is important for varietal selection by plant breeders and management decision-making by growers. Unlike prior studies that focus mainly on county-level or controlled laboratory-scale areas, this study targets a production-scale area, better representing real-world agricultural conditions and offering more practical relevance for farmers. Therefore, the objective of our study was to determine the best combination of vegetation indices and abiotic factors for predicting corn yield in a rain-fed, production-scale area, identify the most suitable corn growth stage for yield estimation using machine learning, and identify the most effective machine learning model for corn yield estimation. Our study used high-resolution (6 cm) aerial multispectral imagery. Sixty-two different predictors, including soil properties (sand, silt, and clay percentages), slope, spectral bands (red, green, blue, red-edge, NIR), vegetation indices (GNDRE, NDRE, TGI), color-space indices, and wavelengths were derived from the multispectral data collected at the seven (V4, V5, V6, V7, V9, V12, and V14/VT) growth stages of corn. Four regression and machine learning algorithms were evaluated for yield prediction: linear regression, random forest, extreme gradient boosting, and gradient boosting regressor. A total of 6865 yield values were used for model training and 1716 for validation. Results show that, using random forest method, the V14/VT stage had the best yield predictions (RMSE of 0.52 Mg/ha for a mean yield of 10.19 Mg/ha), and yield estimation at V6 stage was still feasible. We concluded that integrating abiotic factors, such as slope and soil properties, significantly improved model accuracy. Among vegetation indices, TGI, HUE, and GNDRE performed better. Results from this study can help farmers or crop consultants plan ahead for future logistics through enhanced early-season yield predictions and support farm profitability and sustainability. Full article
24 pages, 5440 KiB  
Article
Environmental Covariates for Sampling Optimization and Pest Prediction in Soybean Crops
by Cenneya Lopes Martins, Maiara Pusch, Wesley Augusto Conde Godoy and Lucas Rios do Amaral
AgriEngineering 2025, 7(1), 21; https://doi.org/10.3390/agriengineering7010021 (registering DOI) - 18 Jan 2025
Viewed by 294
Abstract
Insect pest infestations can vary due to spatial differences in microclimates and food availability within agroecosystems. Covariates can reflect these environmental conditions. This study tested whether using environmental covariates in two-phase sample optimization improved the spatial predictions for soybean insect pests. During the [...] Read more.
Insect pest infestations can vary due to spatial differences in microclimates and food availability within agroecosystems. Covariates can reflect these environmental conditions. This study tested whether using environmental covariates in two-phase sample optimization improved the spatial predictions for soybean insect pests. During the 2021–2022 crop season, insect pest samples were collected at 50 georeferenced points in a commercial soybean field in Brazil, alongside data on environmental covariates such as vegetation indices, soil properties, terrain topography, and distances from riparian areas. Three covariates were selected using correlation and principal component analysis (PCA). In the 2022–2023 crop season, sample designs were optimized using the iterative algorithm optimization of sample configurations using spatial simulated annealing (SPSANN) using the selected covariates, resulting in two optimized designs that were compared to a regular grid. Data from the three sampling designs comprising 50 points were evaluated using geostatistical methods, regression analysis (pest abundance), and classification (pest presence or absence) via the random forest algorithm. The data showed no spatial dependence, making using geostatistical interpolators inappropriate. However, a multi-objective optimized sampling design, tailored to refine configurations for identifying and estimating variograms and spatial trends essential for spatial interpolation, produced the most accurate predictions. Therefore, a two-phase sample optimization with prior in situ selection of environmental covariates improves pest predictions in agricultural systems, contributing to more efficient and sustainable agricultural management. Full article
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<p>Diagram of the two-phase sample optimization research using environmental covariates.</p>
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<p>Location of the experimental area showing the two fields. Cartographic base: IBGE, 2023. Basemap: Google Satellite.</p>
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<p>Environmental covariates. Vegetation indices (cycle image): EVI, NDVI, NDRE, SFDVI, and DVI ((<b>A</b>–<b>E</b>), respectively); soil clay content (<b>F</b>); slope (<b>G</b>); river distance (<b>H</b>), and riparian forest distance (<b>I</b>).</p>
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<p>Sampling designs in Phase 1 (<b>A</b>) and Phase 2 (<b>B</b>–<b>E</b>). (<b>A</b>) Phase 1: 28 optimized MSSD sampling points combined with 22 random points (50 points). Phase 2: Regular grid (<b>B</b>), optimized CORR design (<b>C</b>), optimized SPAN design (<b>D</b>), each with 50 points, and external dataset (20 points).</p>
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<p>PCA results using the median of pests and the mean of the VIs in the soybean cycle.</p>
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<p>Scatter plots and metrics of RF regression modeling using environmental covariates in predicting the total pests using the regular (squares), CORR (stars), and SPAN (triangles) sampling designs ((<b>A</b>–<b>C</b>), respectively), and the prediction of <span class="html-italic">E. heros</span> in the same sampling designs (<b>D</b>–<b>F</b>). The red line represents the 1:1 ideal relationship (observed = predicted), while the dashed line indicates the regression line of the model predictions.</p>
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<p>Scatter plots and external validation metrics for the total pest predictions using the regular (squares), CORR (stars), and SPAN (triangles) sampling designs ((<b>A</b>–<b>C</b>), respectively). The red line represents the 1:1 ideal relationship (observed = predicted), while the dashed line indicates the regression line of the model predictions.</p>
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<p>Environmental covariates, pest sampling points, and prediction maps. (<b>A</b>–<b>C</b>) Environmental covariates selected in phase 1: soil clay content, NDVI, and distance from river. (<b>D</b>–<b>F</b>) Predicted maps using the RF regression algorithm, with environmental covariates as predictors of total pests abundance in the regular, CORR, and SPAN sampling designs, respectively. (<b>G</b>–<b>I</b>) Predicted maps using the RF classifier algorithm, with environmental covariates as predictors of the presence and absence of <span class="html-italic">E. heros</span> in the regular, CORR, and SPAN sampling designs, respectively.</p>
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19 pages, 870 KiB  
Article
Prioritizing Patient Selection in Clinical Trials: A Machine Learning Algorithm for Dynamic Prediction of In-Hospital Mortality for ICU Admitted Patients Using Repeated Measurement Data
by Emma Pedarzani, Alberto Fogangolo, Ileana Baldi, Paola Berchialla, Ilaria Panzini, Mohd Rashid Khan, Giorgia Valpiani, Savino Spadaro, Dario Gregori and Danila Azzolina
J. Clin. Med. 2025, 14(2), 612; https://doi.org/10.3390/jcm14020612 (registering DOI) - 18 Jan 2025
Viewed by 191
Abstract
Background: A machine learning prognostic mortality scoring system was developed to address challenges in patient selection for clinical trials within the Intensive Care Unit (ICU) environment. The algorithm incorporates Red blood cell Distribution Width (RDW) data and other demographic characteristics to predict ICU [...] Read more.
Background: A machine learning prognostic mortality scoring system was developed to address challenges in patient selection for clinical trials within the Intensive Care Unit (ICU) environment. The algorithm incorporates Red blood cell Distribution Width (RDW) data and other demographic characteristics to predict ICU mortality alongside existing ICU mortality scoring systems like Simplified Acute Physiology Score (SAPS). Methods: The developed algorithm, defined as a Mixed-effects logistic Random Forest for binary data (MixRFb), integrates a Random Forest (RF) classification with a mixed-effects model for binary outcomes, accounting for repeated measurement data. Performance comparisons were conducted with RF and the proposed MixRFb algorithms based solely on SAPS scoring, with additional evaluation using a descriptive receiver operating characteristic curve incorporating RDW’s predictive mortality ability. Results: MixRFb, incorporating RDW and other covariates, outperforms the SAPS-based variant, achieving an area under the curve of 0.882 compared to 0.814. Age and RDW were identified as the most significant predictors of ICU mortality, as reported by the variable importance plot analysis. Conclusions: The MixRFb algorithm demonstrates superior efficacy in predicting in-hospital mortality and identifies age and RDW as primary predictors. Implementation of this algorithm could facilitate patient selection for clinical trials, thereby improving trial outcomes and strengthening ethical standards. Future research should focus on enriching algorithm robustness, expanding its applicability across diverse clinical settings and patient demographics, and integrating additional predictive markers to improve patient selection capabilities. Full article
(This article belongs to the Section Intensive Care)
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