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21 pages, 17676 KiB  
Article
Comparative Assessment of the Effect of Positioning Techniques and Ground Control Point Distribution Models on the Accuracy of UAV-Based Photogrammetric Production
by Muhammed Enes Atik and Mehmet Arkali
Drones 2025, 9(1), 15; https://doi.org/10.3390/drones9010015 - 27 Dec 2024
Abstract
Unmanned aerial vehicle (UAV) systems have recently become essential for mapping, surveying, and three-dimensional (3D) modeling applications. These systems are capable of providing highly accurate products through integrated advanced technologies, including a digital camera, inertial measurement unit (IMU), and Global Navigation Satellite System [...] Read more.
Unmanned aerial vehicle (UAV) systems have recently become essential for mapping, surveying, and three-dimensional (3D) modeling applications. These systems are capable of providing highly accurate products through integrated advanced technologies, including a digital camera, inertial measurement unit (IMU), and Global Navigation Satellite System (GNSS). UAVs are a cost-effective alternative to traditional aerial photogrammetry, and recent advancements demonstrate their effectiveness in many applications. In UAV-based photogrammetry, ground control points (GCPs) are utilized for georeferencing to enhance positioning precision. The distribution, number, and location of GCPs in the study area play a crucial role in determining the accuracy of photogrammetric products. This research evaluates the accuracy of positioning techniques for image acquisition for photogrammetric production and the effect of GCP distribution models. The camera position was determined using real-time kinematic (RTK), post-processed kinematic (PPK), and precise point positioning-ambiguity resolution (PPP-AR) techniques. In the criteria for determining the GCPs, six models were established within the İstanbul Technical University, Ayazaga Campus. To assess the accuracy of the points in these models, the horizontal, vertical, and 3D root mean square error (RMSE) values were calculated, holding the test points stationary in place. In the study, 2.5 cm horizontal RMSE and 3.0 cm vertical RMSE were obtained with the model containing five homogeneous GCPs by the indirect georeferencing method. The highest RMSE values of all three components in RTK, PPK, and PPP-AR methods were obtained without GCPs. For all six models, all techniques have an error value of sub-decimeter. The PPP-AR technique yields error values that are comparable to those of the other techniques. The PPP-AR appears to be an alternative to RTK and PPK, which usually require infrastructure, labor, and higher costs. Full article
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<p>The basis of globally operating PPP.</p>
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<p>The fundamental concept of RTK GNSS positioning through the use of a UAV.</p>
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<p>The study area is located on the Ayazaga Campus of Istanbul Technical University, Türkiye.</p>
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<p>Distribution of test points (on <b>left</b>) in the study area and GCP sample (on <b>right</b>).</p>
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<p>GCP distribution models generated in the study area.</p>
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<p>All stations of network ISKI-UKBS [<a href="#B55-drones-09-00015" class="html-bibr">55</a>].</p>
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<p>Workflow for post-processed positioning techniques.</p>
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<p>PALA station (on <b>left</b>) and distance (on <b>right</b>) from the study area.</p>
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<p>Orthomosaic (on <b>left</b>) and DEM (on <b>right</b>) produced as a result of photogrammetric evaluation.</p>
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<p>Box plot for horizontal and vertical differences in CPs. Red dots refer to outliers.</p>
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<p>The errors in the X-axis were evaluated for each positioning technique.</p>
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<p>The errors in the Y-axis were evaluated for each positioning technique.</p>
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<p>The errors in the Z-axis were evaluated for each positioning technique.</p>
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15 pages, 4754 KiB  
Article
Discoidin Domain Receptor 2 Contributes to Breast Cancer Progression and Chemoresistance by Interacting with Collagen Type I
by Ai Sato, Kiyoshi Takagi, Momoka Yoshida, Mio Yamaguchi-Tanaka, Mikoto Sagehashi, Yasuhiro Miki, Minoru Miyashita and Takashi Suzuki
Cancers 2024, 16(24), 4285; https://doi.org/10.3390/cancers16244285 - 23 Dec 2024
Viewed by 289
Abstract
Background: Chemoresistance is an important issue to be solved in breast cancer. It is well known that the content and morphology of collagens in tumor tissues are drastically altered following chemotherapy, and discoidin domain receptor 2 (DDR2) is a unique type of [...] Read more.
Background: Chemoresistance is an important issue to be solved in breast cancer. It is well known that the content and morphology of collagens in tumor tissues are drastically altered following chemotherapy, and discoidin domain receptor 2 (DDR2) is a unique type of receptor tyrosine kinase (RTK). This RTK is activated by collagens, playing important roles in human malignancies. However, the contribution to the chemoresistance of DDR2 in terms of the association with collagens remains largely unclear in breast cancer. Methods: We immunolocalized DDR2 and collagen type I in 224 breast cancer tissues and subsequently conducted in vitro studies to confirm the role of DDR2 in breast cancer chemoresistance using chemosensitive and chemoresistant cell lines. Results: DDR2 immunoreactivity was positively correlated with aggressive behaviors of breast cancer and was significantly associated with an increased risk of recurrence, especially in those who received chemotherapy. Moreover, in vitro experiments demonstrated that DDR2 promoted the proliferative activity of breast cancer cells, and cell viability after epirubicin treatment was significantly maintained by DDR2 in a collagen I-dependent manner. Conclusions: These data suggested that DDR2 could be a poor prognostic factor associated with cell proliferation and chemotherapy resistance in human breast cancer. Full article
(This article belongs to the Special Issue Hormones and Tumors)
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<p>Representative image of DDR2 and collagen type I immunostaining in human breast cancer. (<b>A</b>–<b>C</b>): immunostaining of DDR2 in breast cancer cells (<b>A</b>), normal breast epithelium (<b>B</b>), and human heart as a positive control of DDR2 (<b>C</b>). (<b>D</b>–<b>F</b>): immunostaining of collagen type I in cancerous stroma (<b>D</b>), normal breast stroma (<b>E</b>), and human skin as a positive control of collagen type I (<b>F</b>). Bar = 100 µm, respectively.</p>
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<p>Association between DDR2 status and clinical outcomes of breast cancer patients (n = 224). (<b>A</b>–<b>D</b>): disease-free survival (<b>A</b>,<b>C</b>) and breast cancer-specific survival (<b>B</b>,<b>D</b>) according to DDR2 status (<b>A</b>,<b>B</b>) or DDR2/collagen type I combination status (<b>C</b>,<b>D</b>). (<b>E</b>–<b>H</b>): disease-free survival according to DDR2 status (<b>E</b>,<b>F</b>) or DDR2/collagen type I combination status (<b>G</b>,<b>H</b>) in the patients who received chemotherapy (<b>E</b>,<b>G</b>) or not (<b>F</b>,<b>H</b>).</p>
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<p>The effect of DDR2 in the proliferation of human breast cancer cell lines in the presence of collagen type I. (<b>A</b>) Immunoblotting of exogenous DDR2 protein in MCF-7, MDA-MB-231, and T47D cells. (<b>B</b>–<b>D</b>): cell proliferation of MCF-7 (<b>A</b>), MDA-MB-231 (<b>B</b>), and T47D (<b>D</b>) transfected with an empty vector or DDR2-expressing vector in the absence or presence of collagen coating. (<b>E</b>) Immunoblotting of DDR2 in the cells transfected with siRNA against DDR2 (siDDR2-1, 2). (<b>F</b>–<b>H</b>): cell proliferation of MCF-7 (<b>F</b>), MDA-MB-231 (<b>G</b>), and T47D (<b>H</b>) transfected with siRNAs in the presence of collagen coating. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001 compared to the empty vector, respectively.</p>
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<p>The effect of DDR2 on the resistance to epirubicin in the breast cancer cell lines. (<b>A</b>–<b>C</b>): viability of MCF-7 (<b>A</b>), MDA-MB-231 (<b>B</b>), and T47D (<b>C</b>) transfected with an empty vector or DDR2-expressing vector under epirubicin treatment (500 nM for MCF-7; 250 nM for MDA-MB-231 and T47D). These cells were plated onto collagen-coated culture plates. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001 compared to the empty vector, respectively. (<b>D</b>–<b>F</b>): viability of MCF-7 (<b>D</b>), MDA-MB-231 (<b>E</b>), and T47D (<b>F</b>) transfected with siRNA targeting DDR2 under epirubicin treatment. (<b>G</b>,<b>H</b>) mRNA and protein expression in chemosensitive parental cells and epirubicin-resistant cells (<b>G</b>; MCF-7 series, <b>H</b>; MDA-MB-231 series). ** <span class="html-italic">p</span> &lt; 0.01, respectively. (<b>I</b>,<b>J</b>) The effect of DDR2 inhibitor WRG-28 treatment (48 h) on the proliferation of chemosensitive parental cells and epirubicin-resistant cells (<b>F</b>; MCF-7 series, <b>G</b>; MDA-MB-231 series).</p>
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<p>The effect of DDR2 on the apoptosis of breast MCF-7 (<b>A</b>), MDA-MB-231 (<b>B</b>), and T47D (<b>C</b>). *** <span class="html-italic">p</span> &lt; 0.001.</p>
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26 pages, 1908 KiB  
Review
The MET Oncogene Network of Interacting Cell Surface Proteins
by Simona Gallo, Consolata Beatrice Folco and Tiziana Crepaldi
Int. J. Mol. Sci. 2024, 25(24), 13692; https://doi.org/10.3390/ijms252413692 - 21 Dec 2024
Viewed by 354
Abstract
The MET oncogene, encoding the hepatocyte growth factor (HGF) receptor, plays a key role in tumorigenesis, invasion, and resistance to therapy, yet its full biological functions and activation mechanisms remain incompletely understood. A feature of MET is its extensive interaction network, encompassing the [...] Read more.
The MET oncogene, encoding the hepatocyte growth factor (HGF) receptor, plays a key role in tumorigenesis, invasion, and resistance to therapy, yet its full biological functions and activation mechanisms remain incompletely understood. A feature of MET is its extensive interaction network, encompassing the following: (i) receptor tyrosine kinases (RTKs); (ii) co-receptors (e.g., CDCP1, Neuropilin1); (iii) adhesion molecules (e.g., integrins, tetraspanins); (iv) proteases (e.g., ADAM10); and (v) other receptors (e.g., CD44, plexins, GPCRs, and NMDAR). These interactions dynamically modulate MET’s activation, signaling, intracellular trafficking, and degradation, enhancing its functional versatility and oncogenic potential. This review offers current knowledge on MET’s partnerships, focusing on their functional impact on signaling output, therapeutic resistance, and cellular behavior. Finally, we evaluate emerging combination therapies targeting MET and its interactors, highlighting their potential to overcome resistance and improve clinical outcomes. By exploring the complex interplay within the MET network of interacting cell surface proteins, this review provides insights into advancing anti-cancer strategies and understanding the broader implications of RTK crosstalk in oncology. Full article
(This article belongs to the Special Issue Latest Review Papers in Molecular and Cellular Biology 2024)
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<p>Molecular structure of MET receptor and its natural ligand HGF. C-tail: C-terminal tail; ECD: extracellular domain; IPT: immunoglobulin–plexin–transcription factor domain; JM: juxta membrane domain; K1–K4: kringle domains; KD: kinase domain; N: N-terminal domain; PSI: plexin–semaphorin–integrin domain; SEMA: semaphorin-like domain; SPH: serine protease homology domain; TM: transmembrane domain. Inset: 2:2 MET-to-HGF active complex. Created in <a href="http://BioRender" target="_blank">BioRender</a> (accessed on 18 December 2024).</p>
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<p>Cell surface proteins interacting with MET: receptor tyrosine kinases and co-receptors. Created in <a href="http://BioRender" target="_blank">BioRender</a> (accessed on 18 December 2024).</p>
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<p>Cell surface proteins interacting with MET: Adhesion molecules (integrins, tetraspanins) and protease ADAM10. Created in <a href="http://BioRender" target="_blank">BioRender</a> (accessed on 18 December 2024).</p>
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<p>Other cell surface receptors interacting with MET: CD44, semaphorins and plexins, GPCRs, and NMDAR. Created in <a href="http://BioRender" target="_blank">BioRender</a> (accessed on 18 December 2024).</p>
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16 pages, 9642 KiB  
Article
Towards an Accurate Real-Time Digital Elevation Model Using Various GNSS Techniques
by Mohamed Abdelazeem, Amgad Abazeed, Hussain A. Kamal and Mudathir O. A. Mohamed
Sensors 2024, 24(24), 8147; https://doi.org/10.3390/s24248147 - 20 Dec 2024
Viewed by 302
Abstract
The objective of our research is to produce a digital elevation model (DEM) in a real-time domain. For this purpose, GNSS measurements are obtained from a kinematic trajectory in a clear location in New Aswan City, Egypt. Different real-time processing solutions are employed, [...] Read more.
The objective of our research is to produce a digital elevation model (DEM) in a real-time domain. For this purpose, GNSS measurements are obtained from a kinematic trajectory in a clear location in New Aswan City, Egypt. Different real-time processing solutions are employed, including real-time precise point positioning (RT-PPP) and real-time kinematics (RTK); additionally, the widely used post-processed precise point positioning (PPP) processing scenario is used. Thereafter, the acquired positioning estimates are compared with the traditional kinematic differential GNSS solution counterparts. To achieve the RT-PPP mode, the instantaneous products from the Centre National d’Etudes Spatiales (CNES) are utilized. Our proposed models are validated for both kinematic positioning and DEM accuracies. For kinematic positioning accuracy validation, the findings indicate that the three-dimensional position is about 0.480 m, 0.101 m, and 0.628 for RT-PPP, RTK, and PPP solutions, respectively. Furthermore, the DEM accuracy investigation shows that the produced DEMs have accuracies within 0.249 m, 0.005 m, and 0.264 m for RT-PPP, RTK, and PPP solutions, respectively. Full article
(This article belongs to the Special Issue Advances in GNSS Signal Processing and Navigation)
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<p>Setup of both base and rover GNSS receivers.</p>
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<p>Kinematic trajectory layout (UTM 36N coordinates in meters).</p>
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<p>GNSS satellite visibility (<b>up</b>) and DOPs (<b>bottom</b>) over the studied area.</p>
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<p>Positioning errors for the RT-PPP, RTK, and PPP solutions.</p>
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<p>Positioning errors for the RT-PPP, RTK, and PPP solutions.</p>
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<p>CDF of the horizontal and vertical positions for the three solutions.</p>
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<p>Produced DEMs from differential, RT-PPP, RTK, and PPP.</p>
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<p>Produced DEMs from differential, RT-PPP, RTK, and PPP.</p>
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<p>Produced DEMs from differential, RT-PPP, RTK, and PPP.</p>
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<p>Histogram of height differences for RT-PPP, RTK, and PPP.</p>
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<p>Histogram of height differences for RT-PPP, RTK, and PPP.</p>
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<p>Box plot of the height differences.</p>
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<p>Error percentages for earthworks volume calculations.</p>
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24 pages, 3802 KiB  
Article
Performance of Individual Tree Segmentation Algorithms in Forest Ecosystems Using UAV LiDAR Data
by Javier Marcello, María Spínola, Laia Albors, Ferran Marqués, Dionisio Rodríguez-Esparragón and Francisco Eugenio
Drones 2024, 8(12), 772; https://doi.org/10.3390/drones8120772 - 19 Dec 2024
Viewed by 529
Abstract
Forests are crucial for biodiversity, climate regulation, and hydrological cycles, requiring sustainable management due to threats like deforestation and climate change. Traditional forest monitoring methods are labor-intensive and limited, whereas UAV LiDAR offers detailed three-dimensional data on forest structure and extensive coverage. This [...] Read more.
Forests are crucial for biodiversity, climate regulation, and hydrological cycles, requiring sustainable management due to threats like deforestation and climate change. Traditional forest monitoring methods are labor-intensive and limited, whereas UAV LiDAR offers detailed three-dimensional data on forest structure and extensive coverage. This study primarily assesses individual tree segmentation algorithms in two forest ecosystems with different levels of complexity using high-density LiDAR data captured by the Zenmuse L1 sensor on a DJI Matrice 300RTK platform. The processing methodology for LiDAR data includes preliminary preprocessing steps to create Digital Elevation Models, Digital Surface Models, and Canopy Height Models. A comprehensive evaluation of the most effective techniques for classifying ground points in the LiDAR point cloud and deriving accurate models was performed, concluding that the Triangular Irregular Network method is a suitable choice. Subsequently, the segmentation step is applied to enable the analysis of forests at the individual tree level. Segmentation is crucial for monitoring forest health, estimating biomass, and understanding species composition and diversity. However, the selection of the most appropriate segmentation technique remains a hot research topic with a lack of consensus on the optimal approach and metrics to be employed. Therefore, after the review of the state of the art, a comparative assessment of four common segmentation algorithms (Dalponte2016, Silva2016, Watershed, and Li2012) was conducted. Results demonstrated that the Li2012 algorithm, applied to the normalized 3D point cloud, achieved the best performance with an F1-score of 91% and an IoU of 83%. Full article
(This article belongs to the Section Drones in Agriculture and Forestry)
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<p>Map of the protected natural areas of the Canary Islands and photographs of the National Parks of Caldera de Taburiente in La Palma (<b>top left</b>) and Garajonay in La Gomera (<b>bottom left</b>).</p>
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<p>Vegetation, true color imagery, and ground truth data for the parks of (<b>a</b>) Caldera de Taburiente and (<b>b</b>) Garajonay.</p>
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<p>Simplified methodology of the individual tree detection and crown delineation using LiDAR data for the extraction of forest parameters.</p>
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<p>Selected algorithms to compare the performance of individual tree detection and crown delineation methods (Software implementation is represented by red, blue, and yellow colors and discussed in <a href="#sec3-drones-08-00772" class="html-sec">Section 3</a>).</p>
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<p>Color composite and LiDAR data (3D cloud and examples of horizontal and vertical profiles) of: (<b>a</b>) Caldera de Taburiente and (<b>b</b>) Garajonay.</p>
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<p>DEMs generated by the different combinations of ground classification and interpolation algorithms: (<b>a</b>) DEMs and (<b>b</b>) Error Maps (green colors refer to lower errors, while red colors refer to higher errors).</p>
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<p>LiDAR models for Taburiente and Garajonay: (<b>a</b>) DEM, (<b>b</b>) CHM and (<b>c</b>) Normalized point cloud.</p>
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<p>Performance evaluation of tree detection algorithms: (<b>a</b>) LMF-LidR, (<b>b</b>) LMF-LIDAR360 and (<b>c</b>) CF.</p>
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<p>Reference seeds (red stars) with respect to the seeds detected by the algorithms (black dots): (<b>a</b>) LMF-LidR (ws = 6), (<b>b</b>) LMF-LIDAR360 (<span class="html-italic">σ</span> = 7) and (<b>c</b>) CF (C = 2).</p>
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<p>Segmentation results: (<b>a</b>) Reference segmentation (color fill) with respect to the segmentation algorithms (vector overlay), (<b>b</b>) precision, recall, and F1-score and (<b>c</b>) IoU.</p>
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<p>Individual tree segmentation for Caldera de Taburiente (<b>left</b>/<b>top</b>) and Garajonay (<b>right</b>/<b>bottom</b>) parks.</p>
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<p>Forest metrics of Taburiente: (<b>a</b>) height, (<b>b</b>) area, and (<b>c</b>) volume.</p>
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<p>Vertical profiles at the Garajonay National Park.</p>
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28 pages, 991 KiB  
Review
A Critical Review on microRNAs as Prognostic Biomarkers in Laryngeal Carcinoma
by Kristina S. Komitova, Lyuben D. Dimitrov, Gergana S. Stancheva, Silva G. Kyurkchiyan, Veronika Petkova, Stoyan I. Dimitrov, Silviya P. Skelina, Radka P. Kaneva and Todor M. Popov
Int. J. Mol. Sci. 2024, 25(24), 13468; https://doi.org/10.3390/ijms252413468 - 16 Dec 2024
Viewed by 426
Abstract
During the past decade, a vast number of studies were dedicated to unravelling the obscurities of non-coding RNAs in all fields of the medical sciences. A great amount of data has been accumulated, and consequently a natural need for organization and classification in [...] Read more.
During the past decade, a vast number of studies were dedicated to unravelling the obscurities of non-coding RNAs in all fields of the medical sciences. A great amount of data has been accumulated, and consequently a natural need for organization and classification in all subfields arises. The aim of this review is to summarize all reports on microRNAs that were delineated as prognostic biomarkers in laryngeal carcinoma. Additionally, we attempt to allocate and organize these molecules according to their association with key pathways and oncogenes affected in laryngeal carcinoma. Finally, we critically analyze the common shortcomings and biases of the methodologies in some of the published papers in this area of research. A literature search was performed using the PubMed and MEDLINE databases with the keywords “laryngeal carcinoma” OR “laryngeal cancer” AND “microRNA” OR “miRNA” AND “prognostic marker” OR “prognosis”. Only research articles written in English were included, without any specific restrictions on study type. We have found 43 articles that report 39 microRNAs with prognostic value associated with laryngeal carcinoma, and all of them are summarized along with the major characteristics and methodology of the respective studies. A second layer of the review is structural analysis of the outlined microRNAs and their association with oncogenes and pathways connected with the cell cycle (p53, CCND1, CDKN2A/p16, E2F1), RTK/RAS/PI3K cascades (EGFR, PI3K, PTEN), cell differentiation (NOTCH, p63, FAT1), and cell death (FADD, TRAF3). Finally, we critically review common shortcomings in the methodology of the papers and their possible effect on their results. Full article
(This article belongs to the Special Issue The Role of RNAs in Cancers: Recent Advances)
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<p>Representation of miRs with prognostic value in laryngeal carcinoma and their association with major oncogenes/pathways (Euler diagram). Asterix displays available data for association with <span class="html-italic">FAT1</span> gene.</p>
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24 pages, 3939 KiB  
Article
Research on the Decision-Making and Control System Architecture for Autonomous Berthing of MASS
by Haoze Zhang, Yingjun Zhang, Hongrui Lu and Yihan Niu
J. Mar. Sci. Eng. 2024, 12(12), 2293; https://doi.org/10.3390/jmse12122293 - 13 Dec 2024
Viewed by 399
Abstract
Autonomous berthing is a critical phase in the fully autonomous navigation process of MASS (Maritime Autonomous Surface Ship). However, the autonomous berthing stage of MASS is significantly influenced by environmental factors and involves a wide range of technical fields, making the technology not [...] Read more.
Autonomous berthing is a critical phase in the fully autonomous navigation process of MASS (Maritime Autonomous Surface Ship). However, the autonomous berthing stage of MASS is significantly influenced by environmental factors and involves a wide range of technical fields, making the technology not yet fully mature. Therefore, this paper addresses three key technological challenges related to ship path planning, guidance and motion control, as well as position and state perception. Additionally, it explores the decision-making and control system architecture for autonomous berthing of MASS. An effective autonomous berthing solution for MASS is proposed. Based on vessel berthing maneuvering, a decision-making algorithm for autonomous berthing is designed. The A-star algorithm is optimized, and an expected path for unmanned boat experiments is designed offline using this algorithm. Subsequently, an indirect ship guidance and motion control program is proposed based on a CFDL-MFAC (Compact Form Dynamic Linearization based Model-Free Adaptive Control) algorithm. Experimental results show that the proposed autonomous berthing decision-making and control system architecture can effectively assist the unmanned boat in achieving autonomous berthing and help it to berth in a stable and desirable state. Full article
(This article belongs to the Section Ocean Engineering)
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<p>The berthing process and the navigation conditions for a vessel at each stage.</p>
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<p>Schematic diagram of the three autonomous berthing modes.</p>
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<p>Schematic diagram of the autonomous berthing program of MASS.</p>
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<p>Schematic diagram of the target berthing states of MASS.</p>
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<p>The tile map and the raster map of the berthing area.</p>
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<p>Three common types of search neighborhoods.</p>
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<p>Search neighborhoods under different relative locations.</p>
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<p>The paths planned by the <span class="html-italic">A-star</span> algorithm and the improved <span class="html-italic">A-star</span> algorithm.</p>
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<p>Schematic diagram of coordinate system transformation.</p>
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<p>The desired path of autonomous berthing.</p>
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<p>Schematic diagram of the guidance program for autonomous berthing of MASS.</p>
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<p>The desired heading of MASS in the relative coordinate system.</p>
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<p>Schematic diagram of decision-making and control system architecture for autonomous berthing.</p>
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<p>Information on the site of the unmanned boat experiment.</p>
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<p>Schematic diagram of the trajectory of the unmanned boat during autonomous berthing.</p>
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<p>Schematic diagram of the heading of the unmanned boat during autonomous berthing.</p>
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<p>Schematic diagram of the angular velocity of the unmanned boat during autonomous berthing.</p>
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<p>Schematic diagram of the speed of the unmanned boat during autonomous berthing.</p>
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14 pages, 5971 KiB  
Article
Flight Altitude and Sensor Angle Affect Unmanned Aerial System Cotton Plant Height Assessments
by Oluwatola Adedeji, Alwaseela Abdalla, Bishnu Ghimire, Glen Ritchie and Wenxuan Guo
Drones 2024, 8(12), 746; https://doi.org/10.3390/drones8120746 - 10 Dec 2024
Viewed by 447
Abstract
Plant height is a critical biophysical trait indicative of plant growth and developmental conditions and is valuable for biomass estimation and crop yield prediction. This study examined the effects of flight altitude and camera angle in quantifying cotton plant height using unmanned aerial [...] Read more.
Plant height is a critical biophysical trait indicative of plant growth and developmental conditions and is valuable for biomass estimation and crop yield prediction. This study examined the effects of flight altitude and camera angle in quantifying cotton plant height using unmanned aerial system (UAS) imagery. This study was conducted in a field with a sub-surface irrigation system in Lubbock, Texas, between 2022 and 2023. Images using the DJI Phantom 4 RTKs were collected at two altitudes (40 m and 80 m) and three sensor angles (45°, 60°, and 90°) at different growth stages. The resulting images depicted six scenarios of UAS altitudes and camera angles. The derived plant height was subsequently calculated as the vertical difference between the apical region of the plant and the ground elevation. Linear regression compared UAS-derived heights to manual measurements from 96 plots. Lower altitudes (40 m) outperformed higher altitudes (80 m) across all dates. For the early season (4 July 2023), the 40 m altitude had r2 = 0.82–0.86 and RMSE = 2.02–2.16 cm compared to 80 m (r2 = 0.66–0.68, RMSE = 7.52–8.76 cm). Oblique angles (45°) yielded higher accuracy than nadir (90°) images, especially in the late season (24 October 2022) results (r2 = 0.96, RMSE = 2.95 cm vs. r2 = 0.92, RMSE = 3.54 cm). These findings guide optimal UAS parameters for plant height measurement. Full article
(This article belongs to the Special Issue Advances of UAV Remote Sensing for Plant Phenology)
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<p>Study site on a research farm in Lubbock County, Texas, in 2022 and 2023.</p>
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<p>DJI Phantom 4 RTKs and GNSS mobile station for acquiring RGB images in a research field in Lubbock, Texas, 2022. (<b>a</b>) DJI Phantom 4 RTKs UAS platform (<b>Left</b>), (<b>b</b>) Phantom 4 UAS controller (<b>middle</b>), and (<b>c</b>) D-RTKs 2 High-Precision GNSS Mobile Station (<b>right</b>) (source: <a href="https://www.dji.com" target="_blank">https://www.dji.com</a>, accessed on 5 January 2024.).</p>
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<p>Image acquisitions at two flight altitudes (40 m and 80 m) and three camera angles (45°, 60°, and 90°) using a UAS in a cotton field in Lubbock, Texas.</p>
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<p>Workflow for processing unmanned aerial system (UAS) images to estimate plant height.</p>
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<p>Boxplot of plant height measurements in a research field in Lubbock, Texas, on 4 July and 2 August 2023 and 28 August and 24 October 2022.</p>
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<p>Errors in UAS-derived cotton plant height at two UAS flight altitudes and three camera angles on (<b>a</b>) 4 July 2023, (<b>b</b>) 2 August 2023, (<b>c</b>) 28 August 2022, and (<b>d</b>) 24 October 2022.</p>
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<p>Interactions between flight altitude and camera angle for errors in plant heights derived from UAS image on (<b>a</b>) 4 July 2023, (<b>b</b>) 2 August 2023, (<b>c</b>) 28 August 2022, and (<b>d</b>) 24 October 2022.</p>
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<p>Tukey’s post hoc test for different camera angles (45°, 60°, 90°) at different flight altitudes for errors in plant heights derived from UAS images on (<b>a</b>) 4 July 2023, (<b>b</b>) 2 August 2023, (<b>c</b>) 28 August 2022, and (<b>d</b>) 24 October 2022. Significance levels: * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001, and n.s. represents non-significant results.</p>
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<p>Relationship between measured plant height and UAS-derived plant height from different UAS altitudes and angles in a research field in Lubbock, Texas. (<b>a</b>) 4 July 2023, (<b>b</b>) 2 August 2023, (<b>c</b>) 28 August 2022, and (<b>d</b>) 24 October 2022.</p>
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<p>Relationship between measured and UAS-derived plant heights using 30% test data for a flight altitude of 40 m and a camera angle of 45° for 4 July and 2 August 2023 and 28 August and 24 October 2022.</p>
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21 pages, 7204 KiB  
Technical Note
A Method for Developing a Digital Terrain Model of the Coastal Zone Based on Topobathymetric Data from Remote Sensors
by Mariusz Specht and Marta Wiśniewska
Remote Sens. 2024, 16(24), 4626; https://doi.org/10.3390/rs16244626 - 10 Dec 2024
Viewed by 423
Abstract
This technical note aims to present a method for developing a Digital Terrain Model (DTM) of the coastal zone based on topobathymetric data from remote sensors. This research was conducted in the waterbody adjacent to the Vistula Śmiała River mouth in Gdańsk, which [...] Read more.
This technical note aims to present a method for developing a Digital Terrain Model (DTM) of the coastal zone based on topobathymetric data from remote sensors. This research was conducted in the waterbody adjacent to the Vistula Śmiała River mouth in Gdańsk, which is characterised by dynamic changes in its seabed topography. Bathymetric and topographic measurements were conducted using an Unmanned Aerial Vehicle (UAV) and two hydrographic methods (a Single-Beam Echo Sounder (SBES) and a manual survey using a Global Navigation Satellite System (GNSS) Real-Time Kinematic (RTK) receiver). The result of this research was the development of a topobathymetric chart based on data recorded by the above-mentioned sensors. It should be emphasised that bathymetric data for the shallow waterbody (less than 1 m deep) were obtained based on high-resolution photos taken by a UAV. They were processed using the “Depth Prediction” plug-in based on the Support Vector Regression (SVR) algorithm, which was implemented in the QGIS software as part of the INNOBAT project. This plug-in allowed us to generate a dense cloud of depth points for a shallow waterbody. Research has shown that the developed DTM of the coastal zone based on topobathymetric data from remote sensors is characterised by high accuracy of 0.248 m (p = 0.95) and high coverage of the seabed with measurements. Based on the research conducted, it should be concluded that the proposed method for developing a DTM of the coastal zone based on topobathymetric data from remote sensors allows the accuracy requirements provided in the International Hydrographic Organization (IHO) Special Order (depth error ≤ 0.25 m (p = 0.95)) to be met in shallow waterbodies. Full article
(This article belongs to the Special Issue Remote Sensing: 15th Anniversary)
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<p>The location of bathymetric and topographic measurements carried out at the Vistula Śmiała River mouth in Gdańsk.</p>
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<p>The location of depth points recorded by an SBES integrated with a GNSS RTK receiver and designed sounding profiles in the study area.</p>
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<p>Flight trajectory of the UAV using the LiDAR system in the study area.</p>
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<p>The distribution of GCPs and UAV flights in the study area.</p>
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<p>A visualisation of the integrated data derived from a total of three mutually independent instruments (GNSS RTK receiver, LiDAR system, SBES).</p>
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<p>A view of georeferenced photos based on the entered GCPs (<b>a</b>) and a point cloud (<b>b</b>).</p>
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<p>The “Depth Prediction” plug-in window (<b>a</b>) and the depth points obtained based on photos (<b>b</b>).</p>
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<p>A bathymetric and topographic DTM of the Vistula Śmiała River mouth in Gdańsk.</p>
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<p>A diagram showing the development of the DTM of the coastal zone based on bathymetric and topographic data integration.</p>
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<p>The location of underwater GCPs that were used to assess the accuracy of the generated DTM of the coastal zone based on bathymetric and topographic data integration.</p>
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16 pages, 21810 KiB  
Article
Enhancing Direct Georeferencing Using Real-Time Kinematic UAVs and Structure from Motion-Based Photogrammetry for Large-Scale Infrastructure
by Soohee Han and Dongyeob Han
Drones 2024, 8(12), 736; https://doi.org/10.3390/drones8120736 - 5 Dec 2024
Viewed by 743
Abstract
The growing demand for high-accuracy mapping and 3D modeling using unmanned aerial vehicles (UAVs) has accelerated advancements in flight dynamics, positioning accuracy, and imaging technology. Structure from motion (SfM), a computer vision-based approach, is increasingly replacing traditional photogrammetry through facilitating the automation of [...] Read more.
The growing demand for high-accuracy mapping and 3D modeling using unmanned aerial vehicles (UAVs) has accelerated advancements in flight dynamics, positioning accuracy, and imaging technology. Structure from motion (SfM), a computer vision-based approach, is increasingly replacing traditional photogrammetry through facilitating the automation of processes such as aerial triangulation (AT), terrain modeling, and orthomosaic generation. This study examines methods to enhance the accuracy of SfM-based AT through real-time kinematic (RTK) UAV imagery, focusing on large-scale infrastructure applications, including a dam and its entire basin. The target area, primarily consisting of homogeneous water surfaces, poses considerable challenges for feature point extraction and image matching, which are crucial for effective SfM. To overcome these challenges and improve the AT accuracy, a constraint equation was applied, incorporating weighted 3D coordinates derived from RTK UAV data. Furthermore, oblique images were combined with nadir images to stabilize AT, and confidence-based filtering was applied to point clouds to enhance geometric quality. The results indicate that assigning appropriate weights to 3D coordinates and incorporating oblique imagery significantly improve the AT accuracy. This approach presents promising advancements for RTK UAV-based AT in SfM-challenging, large-scale environments, thus supporting more efficient and precise mapping applications. Full article
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<p>Four scenarios for nadir–oblique combined photography: (<b>a</b>) a single grid for each direction, (<b>b</b>) sequential nadir/2–oblique shots in a double grid, (<b>c</b>) sequential nadir/4–oblique shots in a single grid, and (<b>d</b>) omnidirectional shots in a single grid.</p>
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<p>Common procedures of SfM.</p>
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<p>Overview of Site 1 (basemap generated using the V-World API).</p>
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<p>Overview of Site 2 (basemap generated using the V-World API).</p>
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<p>Failed images at Site 1: (<b>a</b>) image locations; (<b>b</b>) a sample image.</p>
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<p>Locations of checkpoints: (<b>a</b>) Site 1; (<b>b</b>) Site 2.</p>
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<p>Point clouds with error points from a horizontal view at Site 1: (<b>a</b>) before filtering; (<b>b</b>) after filtering.</p>
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<p>Point clouds with error points from a perspective view at Site 1: (<b>a</b>) before filtering; (<b>b</b>) after filtering.</p>
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19 pages, 7892 KiB  
Article
Development and Evaluation of an Affordable Variable Rate Applicator Controller for Precision Agriculture
by Ahmed Abdalla and Ali Mirzakhani Nafchi
AgriEngineering 2024, 6(4), 4639-4657; https://doi.org/10.3390/agriengineering6040265 - 3 Dec 2024
Viewed by 584
Abstract
Considerable variation in soil often occurs within and across production fields, which can significantly impact farming input management strategies. Optimizing resource utilization while enhancing crop productivity is critical for achieving Sustainable Development Goals (SDGs). This paper proposes a low-cost retrofittable Variable Rate Applicator [...] Read more.
Considerable variation in soil often occurs within and across production fields, which can significantly impact farming input management strategies. Optimizing resource utilization while enhancing crop productivity is critical for achieving Sustainable Development Goals (SDGs). This paper proposes a low-cost retrofittable Variable Rate Applicator Controller (VRAC) designed to leverage soil variability and facilitate the adoption of Variable Rate Technologies. The controller operates using a Raspberry Pi platform, RTK—Global Navigation Satellite System (GNSS), a stepper motor, and an anti-slip wheel encoder. The VRAC allows precise, on-the-fly control of the Variable Rate application of farming inputs utilizing an accurate GNSS to pinpoint geographic coordinates in real time. A wheel encoder measures accurate distance travel, providing a real-time calculation of speed with a slip-resistant wheel design for precise RPM readings. The Raspberry Pi platform processes the data, enabling dynamic adjustments of variability based on predefined maps, while the motor driver controls the motor’s RPM. It is designed to be plug-and-play, user-friendly, and accessible for a broader range of farming practices, including seeding rates, dry fertilizer, and liquid fertilizer application. Data logging is performed from various field sensors. The controller exhibits an average of 0.864 s for rate changes from 267 to 45, 45 to 241, 241 to 128, 128 to 218, and 218 to 160 kg/ha at speeds of 8, 11, 16, 19, 24, and 32 km/h. It has an average coefficient of variation of 4.59, an accuracy of 97.17%, a root means square error (RMSE) of 4.57, an R square of 0.994, and an average standard deviation of 1.76 kg for seeding discharge. The cost-effectiveness and retrofitability of this technology offer an increase in precision agriculture adoption to a broader range of farmers and promote sustainable farming practices. Full article
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<p>Fertilizer cost with and without VRT for low and high soil variability.</p>
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<p>Planted acres vs. adoption rate of VRT.</p>
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<p>United States produced corn and consumed nitrogen fertilizer from 2003 to 2024.</p>
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<p>South Dakota produced corn and consumed nitrogen fertilizer from 2003 to 2024.</p>
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<p>Development of SDSU-VRAC: (<b>a</b>) represents the development and testing of the SDSU-VRAC, (<b>b</b>) the modification of the Gandy four-row unit, and (<b>c</b>) testing of the anti-slippage wheel.</p>
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<p>System block diagram.</p>
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<p>Components of the VRAC, (<b>a</b>) 12v power supply, (<b>b</b>) wheel encoder, (<b>c</b>) GNSS, (<b>d</b>) prescription map, (<b>e</b>) Raspberry Pi, (<b>f</b>) monitor, (<b>g</b>) motor drive, (<b>h</b>) stepper motor, and (<b>i</b>) feedback encoder.</p>
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<p>Mechatronic design methodology.</p>
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<p>Calibration chart of the SDSU-VRAC.</p>
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<p>Randomized experiment design plot planting prescription map.</p>
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<p>Time response evaluation map for different speeds and rates.</p>
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<p>Seeding discharge evaluation.</p>
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<p>Time response evaluation setup.</p>
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<p>Target seeding rate compared with SDSU-VRAC discharge rate.</p>
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<p>Interaction chart of target seeding rate vs. SDSU-VRAC discharge rate, coefficient of determination R<sup>2</sup> = 0.0994 across 8 treatments.</p>
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<p>Application rate compared with SDSU-VRAC error.</p>
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<p>(<b>a</b>,<b>b</b>): actual vs. target rate error (%) and controller performance evaluation (%).</p>
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<p>Time response.</p>
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<p>(<b>a</b>) Detailed description of the shift from the target rate (kg) for different speeds; (<b>b</b>) combined shift from the target rate (kg/ha) for different speeds.</p>
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<p>(<b>a</b>) Detailed description of the shift from the target rate (kg) for different speeds; (<b>b</b>) combined shift from the target rate (kg/ha) for different speeds.</p>
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22 pages, 11231 KiB  
Article
Sprouty2 Regulates Endocytosis and Degradation of Fibroblast Growth Factor Receptor 1 in Glioblastoma Cells
by Barbara Hausott, Lena Pircher, Michaela Kind, Jong-Whi Park, Peter Claus, Petra Obexer and Lars Klimaschewski
Cells 2024, 13(23), 1967; https://doi.org/10.3390/cells13231967 - 28 Nov 2024
Viewed by 619
Abstract
The Sprouty (SPRY) proteins are evolutionary conserved modulators of receptor tyrosine kinase (RTK) signaling. SPRY2 inhibits fibroblast growth factor (FGF) signaling, whereas it enhances epidermal growth factor (EGF) signaling through inhibition of EGF receptor (EGFR) endocytosis, ubiquitination, and degradation. In this study, we [...] Read more.
The Sprouty (SPRY) proteins are evolutionary conserved modulators of receptor tyrosine kinase (RTK) signaling. SPRY2 inhibits fibroblast growth factor (FGF) signaling, whereas it enhances epidermal growth factor (EGF) signaling through inhibition of EGF receptor (EGFR) endocytosis, ubiquitination, and degradation. In this study, we analyzed the effects of SPRY2 on endocytosis and degradation of FGF receptor 1 (FGFR1) using two human glioblastoma (GBM) cell lines with different endogenous SPRY2 levels. SPRY2 overexpression (SPRY2-OE) inhibited clathrin- and caveolae-mediated endocytosis of FGFR1, reduced the number of caveolin-1 vesicles and the uptake of transferrin. Furthermore, FGFR1 protein was decreased by SPRY2-OE, whereas EGFR protein was increased. SPRY2-OE enhanced FGFR1 degradation by increased c-casitas b-lineage lymphoma (c-CBL)-mediated ubiquitination, but it diminished binding of phospholipase Cγ1 (PLCγ1) to FGFR1. Consequently, SPRY2-OE inhibited FGF2-induced activation of PLCγ1, whereas it enhanced EGF-induced PLCγ1 activation. Despite the reduction of FGFR1 protein and the inhibition of FGF signaling, SPRY2-OE increased cell viability, and knockdown of SPRY2 enhanced the sensitivity to cisplatin. These results demonstrate that the inhibitory effect of SPRY2-OE on FGF signaling is at least in part due to the reduction in FGFR1 levels and the decreased binding of PLCγ1 to the receptor. Full article
(This article belongs to the Section Cell Signaling)
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<p>Western blot analyses of endogenous SPRY2 protein in U251 and SF126 cells and the effects of SPRY2 overexpression (SPRY2-OE) and SPRY2 short hairpin RNA (shSPRY2). (<b>A</b>) Endogenous SPRY2 protein is much lower in U251 cells than in SF126 cells. N = 4, mean ± SD. *** <span class="html-italic">p</span> &lt; 0.001. (<b>B</b>) SPRY2-OE increased SPRY2 protein levels in U251 cells, whereas shSPRY2 reduced SPRY2 protein in SF126 cells. N = 4, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>SPRY2 reduces the number of FGFR1 and FGF2 vesicles and their colocalization in U251 and SF126 cells. (<b>A</b>) U251 control cells with low endogenous SPRY2 level and U251 cells with SPRY2-OE were transfected with FGFR1 fused to enhanced green fluorescent protein (FGFR1-EGFP) and treated with cyanine 3-labeled FGF2 (FGF2-Cy3) for 30 min. Whole-cell analysis of confocal images revealed a reduction in FGFR1 (green) and FGF2 (red) vesicles per cell and their reduced colocalization (yellow) in response to SPRY2-OE. N = 18 experiments, mean ± SEM. *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001. (<b>B</b>) SF126 control cells with high endogenous SPRY2 content and SF126 cells with shSPRY2 were transfected with FGFR1-EGFP and treated with FGF2-Cy3 for 30 min. Whole-cell analysis of confocal images revealed an increase in FGFR1 (green) and FGF2 (red) vesicles per cell as well as their enhanced colocalization (yellow) in response to shSPRY2. N = 15 experiments, mean ± SEM. *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001. White, bold arrowheads indicate cell surface localization of FGFR1 and FGF2. Yellow arrowheads mark internalized FGFR1 vesicles colocalizing with FGF2. Scale bar = 4 µm.</p>
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<p>SPRY2 inhibits colocalization of clathrin with FGFR1 and FGF2 in U251 and SF126 cells. (<b>A</b>) U251 control cells with low endogenous SPRY2 level and U251 cells with SPRY2-OE were transfected with FGFR1-EGFP, treated with FGF2-Cy3 for 30 min, and immunostained against clathrin. Whole-cell analysis of confocal images revealed no change in the number of clathrin vesicles per cell (blue) after SPRY2-OE. The colocalization of clathrin (blue) with FGFR1 (green; colocalization with clathrin = turquoise) and FGF2 (red; colocalization with clathrin = magenta) was reduced in response to SPRY2-OE. N = 6 experiments, mean ± SEM. * <span class="html-italic">p</span> &lt; 0.05. (<b>B</b>) SF126 control cells with high endogenous SPRY2 content and SF126 cells with shSPRY2 were transfected with FGFR1-EGFP, treated with FGF2-Cy3 for 30 min, and immunostained against clathrin. The number of clathrin vesicles per cell (blue) was not altered with shSPRY2. The colocalization of clathrin (blue) with FGFR1 (green; colocalization with clathrin = turquoise) and FGF2 (red; colocalization with clathrin = magenta) was enhanced with shSPRY2. N = 5 experiments, mean ± SEM. ** <span class="html-italic">p</span> &lt; 0.01. White, bold arrowheads indicate cell surface localization of FGFR1 and FGF2. Yellow arrowheads mark internalized FGFR1 and FGF2 vesicles colocalizing with clathrin. Scale bar = 4 µm.</p>
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<p>SPRY2 inhibits colocalization of caveolin-1 with FGFR1 and FGF2 in U251 and SF126 cells and reduces caveolin-1 vesicles. (<b>A</b>) U251 control cells with low endogenous SPRY2 level and U251 cells with SPRY2-OE were transfected with FGFR1-EGFP, treated with FGF2-Cy3 for 30 min, and immunostained against caveolin-1. Whole-cell analysis of confocal images revealed a reduction in the number of caveolin-1 vesicles per cell (blue) after SPRY2-OE. The colocalization of caveolin-1 (blue) with FGFR1 (green; colocalization with caveolin-1 = turquoise) and FGF2 (red; colocalization with caveolin-1 = magenta) was reduced in response to SPRY2-OE. N = 6 experiments, mean ± SEM. ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. (<b>B</b>) SF126 control cells with high endogenous SPRY2 content and SF126 cells with shSPRY2 were transfected with FGFR1-EGFP, treated with FGF2-Cy3 for 30 min, and immunostained against caveolin-1. The number of caveolin-1 vesicles per cell (blue) was slightly but not significantly enhanced with shSPRY2. The colocalization of caveolin-1 (blue) with FGFR1 (green; colocalization with caveolin-1 = turquoise) and FGF2 (red; colocalization with caveolin-1 = magenta) was enhanced with shSPRY2. N = 5 experiments, mean ± SEM. * <span class="html-italic">p</span> &lt; 0.05. White, bold arrowheads indicate cell surface localization of FGFR1 and FGF2. Yellow arrowheads mark internalized FGFR1 and FGF2 vesicles colocalizing with caveolin-1. Scale bar = 4 µm.</p>
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<p>SPRY2 reduces caveolin-1 protein in U251 and SF126 cells. (<b>A</b>) SPRY2-OE reduced caveolin-1 protein levels in U251 cells and shSPRY2 slightly enhanced caveolin-1 protein in SF126 cells. N = 4 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05. (<b>B</b>) U251 cells with low endogenous SPRY2 revealed higher caveolin-1 protein levels than SF126 cells with high endogenous SPRY2. N = 4 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>SPRY2 decreases transferrin-647 uptake and colocalization of transferrin with FGFR1 and FGF2 in U251 and SF126 cells. (<b>A</b>) U251 control cells with low endogenous SPRY2 level and U251 cells with SPRY2-OE were transfected with FGFR1-EGFP and treated with FGF2-Cy3 for 30 min and with transferrin-647 for 15 min. Whole-cell analysis of confocal images revealed a reduction in the uptake of transferrin vesicles per cell (blue) after SPRY2-OE. The colocalization of transferrin (blue) with FGFR1 (green; colocalization with transferrin = turquoise) and FGF2 (red; colocalization with transferrin = magenta) was also reduced in response to SPRY2-OE. N = 6 experiments, mean ± SEM. ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. (<b>B</b>) SF126 control cells with high endogenous SPRY2 content and SF126 cells with shSPRY2 were transfected with FGFR1-EGFP and treated with FGF2-Cy3 for 30 min and with transferrin-647 for 15 min. The uptake of transferrin vesicles per cell (blue) was increased with shSPRY2, and the colocalization of transferrin (blue) with FGFR1 (green; colocalization with transferrin = turquoise) and FGF2 (red; colocalization with transferrin = magenta) was enhanced with shSPRY2. N = 5 experiments, mean ± SEM. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01. White, bold arrowheads indicate cell surface localization of FGFR1 and FGF2. Yellow arrowheads mark FGFR1 and FGF2 vesicles colocalizing with transferrin. Scale bar = 4 µm.</p>
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<p>SPRY2 reduces FGFR1 and increases EGFR protein but has no effect on FGFR1 and EGFR mRNA levels. (<b>A</b>) Western blot analyses of U251 and SF126 cells overexpressing FGFR1-EGFP and treated with FGF2 for 30 min revealed reduced FGFR1 protein after SPRY2-OE in U251 cells and enhanced FGFR1 protein in SF126 cells with shSPRY2. N = 4 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05. (<b>B</b>) qRT-PCR did not reveal changes in FGFR1 mRNA content in response to SPRY2-OE in U251 cells or shSPRY2 in SF126 cells overexpressing FGFR1-EGFP and treated with FGF2 for 30 min. N = 3 experiments, mean ± SEM. (<b>C</b>) Western blot analyses of endogenous FGFR1 in U251 and SF126 cells that were not transfected with FGFR1-EGFP but treated with FGF2 for 30 min also revealed reduced FGFR1 protein after SPRY2-OE in U251 cells and enhanced FGFR1 protein in SF126 cells with shSPRY2. N = 4 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05. (<b>D</b>) Western blot analyses of U251 cells overexpressing EGFR-EGFP and treated with EGF for 30 min revealed increased EGFR protein after SPRY2-OE, whereas SF126 cells with shSPRY2 exhibited reduced EGFR protein. N = 3 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05. (<b>E</b>) qRT-PCR did not reveal changes in EGFR mRNA content in response to SPRY2-OE in U251 cells or shSPRY2 in SF126 cells overexpressing EGFR-EGFP and treated with EGF for 30 min. N = 3 experiments, mean ± SEM.</p>
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<p>SPRY2-OE increases FGFR1 degradation by enhanced c-CBL-mediated ubiquitination and reduces binding of PLCγ1 to FGFR1 in U251 cells. (<b>A</b>) Whole-cell lysates of U251 control cells and U251 cells with SPRY2-OE transfected with FGFR1-EGFP and treated with FGF2 for 10 min. U251 cells with SPRY2-OE revealed reduced FGFR1 protein but no change in ubiquitin, c-CBL, or PLCγ1. (<b>B</b>) Anti-FGFR1 immunoprecipitates (IP) revealed reduced FGFR1 protein but enhanced ubiquitination and c-CBL after SPRY2-OE. PLCγ1 was reduced in anti-FGFR1 immunoprecipitates with SPRY2-OE, and the overexpressed but not the endogenous SPRY2 was detected in anti-FGFR1 immunoprecipitates. (<b>C</b>) Quantification of anti-FGFR1 immunoprecipitates (IP) confirmed the increase of ubiquitin and c-CBL but the reduction of PLCγ1 in response to SPRY2-OE. N = 3 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>SiRNA-induced knockdown of c-CBL increases FGFR1 protein in U251 cells with SPRY2-OE but the mutant SPRY2<sup>Y55F</sup>, which does not bind c-CBL, reduces FGFR1 protein. (<b>A</b>) Western blot analyses of U251 cells transfected with scrambled control siRNA (siControl) or siRNA against c-CBL (siCBL) overexpressing FGFR1-EGFP and treated with FGF2 for 30 min revealed reduced c-CBL with siCBL compared to siControl in U251 control cells and in U251 cells with SPRY2-OE. N = 4 experiments, mean ± SD. ** <span class="html-italic">p</span> &lt; 0.01. (<b>B</b>) U251 cells transfected with control siRNA (siControl) and siRNA against c-CBL (siCBL) overexpressing FGFR1-EGFP and treated with FGF2 for 30 min revealed increased FGFR1 protein in U251 control cells and in U251 cells with SPRY2-OE in response to siCBL. N = 5 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05, *** <span class="html-italic">p</span> &lt; 0.001. (<b>C</b>) FGFR1 protein was reduced by SPRY2-OE and by overexpression of mutant SPRY2<sup>Y55F</sup> in U251 cells overexpressing FGFR1-EGFP and treated with FGF2 for 30 min. N = 3 experiments, mean ± SD. ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>SPRY2-OE inhibits FGF2-induced activation of PLCγ1 and ERK in U251 cells, but shSPRY2 only increases FGF2-induced PLCγ1 activation in SF126 cells. (<b>A</b>) U251 control cells with low endogenous SPRY2 level and U251 cells with SPRY2-OE transfected with FGFR1-EGFP and treated with FGF2 for 30 and 120 min. Activation of PLCγ1 and ERK was inhibited by SPRY2-OE. N = 4 experiments, mean ± SD. ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001. (<b>B</b>) Naive SF126 control cells with high endogenous SPRY2 content and SF126 cells with shSPRY2 transfected with FGFR1-EGFP and treated with FGF2 for 30 and 120 min. Activation of PLCγ1 but not of ERK was elevated by shSPRY2. N = 4 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>SPRY2-OE increases EGF-induced PLCγ1 signaling in U251 cells, and shSPRY2 inhibits EGF-induced PLCγ1 and ERK signaling in SF126 cells. (<b>A</b>) U251 control cells and U251 cells with SPRY2-OE transfected with EGFR-EGFP and treated with EGF for 30 and 120 min. Activation of PLCγ1 but not of ERK was increased by SPRY2-OE. N = 3 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05, *** <span class="html-italic">p</span> &lt; 0.001. (<b>B</b>) Naive SF126 control cells and SF126 cells with shSPRY2 transfected with EGFR-EGFP and treated with EGF for 30 and 120 min. Activation of PLCγ1 and ERK was reduced by shSPRY2. N = 3 experiments, mean ± SD. ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>SPRY2-OE increases cell viability and reduces stemness markers in U251 cells, whereas shSPRY2 enhances cisplatin sensitivity and increases stemness markers in SF126 cells. (<b>A</b>) U251 control cells and U251 cells with SPRY2-OE were transfected with FGFR1-EGFP and treated with FGF2 and 15 and 30 µM cisplatin for 24 h. Cell viability of U251 cells was increased by SPRY2-OE in all groups. N = 4 experiments, mean ± SEM. **** <span class="html-italic">p</span> &lt; 0.0001. (<b>B</b>) Naive SF126 control cells and SF126 cells with shSPRY2 were transfected with FGFR1-EGFP and treated with FGF2 and 10 and 15 µM cisplatin for 24 h. Cell viability of SF126 cells was not altered by shSPRY2, but cell viability was more strongly reduced by cisplatin treatment in cells with shSPRY2 than in control cells. N = 5 experiments, mean ± SEM. ** <span class="html-italic">p</span> &lt; 0.01, **** <span class="html-italic">p</span> &lt; 0.0001. (<b>C</b>) SPRY2-OE reduces SOX2 and CD44 in U251 cells overexpressing FGFR1-EGFP. N = 4 experiments, mean ± SD. ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. (<b>D</b>) ShSPRY2 increases SOX2 and CD44 in SF126 cells overexpressing FGFR1-EGFP. N = 4 experiments, mean ± SD. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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19 pages, 3890 KiB  
Article
Long-Baseline Real-Time Kinematic Positioning: Utilizing Kalman Filtering and Partial Ambiguity Resolution with Dual-Frequency Signals from BDS, GPS, and Galileo
by Deying Yu, Houpu Li, Zhiguo Wang, Shuguang Wu, Yi Liu, Kaizhong Ju and Chen Zhu
Aerospace 2024, 11(12), 970; https://doi.org/10.3390/aerospace11120970 - 26 Nov 2024
Viewed by 421
Abstract
This study addresses the challenges associated with single-system long-baseline real-time kinematic (RTK) navigation, including limited positioning accuracy, inconsistent signal reception, and significant residual atmospheric errors following double-difference corrections. This study explores the effectiveness of long-baseline RTK navigation using an integrated system of the [...] Read more.
This study addresses the challenges associated with single-system long-baseline real-time kinematic (RTK) navigation, including limited positioning accuracy, inconsistent signal reception, and significant residual atmospheric errors following double-difference corrections. This study explores the effectiveness of long-baseline RTK navigation using an integrated system of the BeiDou Navigation Satellite System (BDS), Global Positioning System (GPS), and Galileo Satellite Navigation System (Galileo). A long-baseline RTK approach that incorporates Kalman filtering and partial ambiguity resolution is applied. Initially, error models are used to correct ionospheric and tropospheric delays. The zenith tropospheric and inclined ionospheric delays and additional atmospheric error components are then regarded as unknown parameters. These parameters are estimated together with the position and ambiguity parameters via Kalman filtering. A two-step method based on a success rate threshold is employed to resolve partial ambiguity. Data from five long-baseline IGS monitoring stations and real-time measurements from a ship were employed for the dual-frequency RTK positioning experiments. The findings indicate that integrating additional GNSSs beyond the BDS considerably enhances both the navigation precision and the rate of ambiguity resolution. At the IGS stations, the integration of the BDS, GPS, and Galileo achieved navigation precisions of 2.0 cm in the North, 5.1 cm in the East, and 5.3 cm in the Up direction while maintaining a fixed resolution exceeding 94.34%. With a fixed resolution of Up to 99.93%, the integration of BDS and GPS provides horizontal and vertical precision within centimeters in maritime contexts. Therefore, the proposed approach achieves precise positioning capabilities for the rover while significantly increasing the rate of successful ambiguity resolution in long-range scenarios, thereby enhancing its practical use and exhibiting substantial application potential. Full article
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<p>Distribution of IGS sites map.</p>
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<p>Sailing trajectory of the test vessel.</p>
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<p>Flowchart of dual-frequency long-baseline RTK.</p>
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<p>Positioning root mean square (RMS) errors.</p>
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<p>Tropospheric errors.</p>
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<p>Ionospheric errors.</p>
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<p>Visual satellite count and PDOP values for the reference station NANO. C represents BDS, CG represents BDS/GPS, CE represents BDS/Galileo, and CGE represents BDS/GPS/Galileo.</p>
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<p>Positioning RMS errors and ambiguity fixing rates.</p>
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<p>RTK positioning errors for the 152 km baseline. The blue line represents the float solution, and the green line represents the fixed solution.</p>
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<p>Error sequence plot of epoch has not achieved single-system and dual-system shipborne data.</p>
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<p>Fixed ambiguity counts and ratios.</p>
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16 pages, 1631 KiB  
Article
Assessment of Vessel Mooring Conditions Using Satellite Navigation System Real-Time Kinematic Application
by Ludmiła Filina-Dawidowicz, Vytautas Paulauskas, Donatas Paulauskas and Viktoras Senčila
J. Mar. Sci. Eng. 2024, 12(12), 2144; https://doi.org/10.3390/jmse12122144 - 25 Nov 2024
Viewed by 519
Abstract
When mooring a ship near the quay, it is important to monitor its speed at the time of contact with the quay to ensure the safe execution of the mooring operation. During mooring, the speed of the ship must not exceed specified values; [...] Read more.
When mooring a ship near the quay, it is important to monitor its speed at the time of contact with the quay to ensure the safe execution of the mooring operation. During mooring, the speed of the ship must not exceed specified values; therefore, it is very important to have the possibility to measure it with high accuracy and its appropriate adjustment. This article aims to present the assessment methodology of the forces acting on quay equipment when a ship is mooring using data provided by the real-time kinematic (RTK) application of the navigation satellite system, as well as a way to calculate the comparative index, which can show the advantages of using data provided by high-accuracy measurement systems compared with the typical one. The methodology of assessing the forces acting on quay equipment when the ship is mooring using data provided by high-precision systems was applied. To verify the developed methodology, the experiments were carried out on real ships and using a calibrated simulator. Based on the research results, it was stated that when planning and managing ships’ mooring operations in ports using data provided by the RTK application, it is possible to reduce the planned energy absorption of quay fenders up to 1.5–1.8 times while preparing the investment in quay development. The implementation of the developed methodology may contribute to the improvement of navigation safety when ships are mooring near the quays and thus allow for the reduction in the probability of undesirable situations occurring. The research results may be of interest to representatives of seaports authorities, traffic management offices, shipowners and other institutions involved in safe ships’ navigation in seaports and approaches to them. Full article
(This article belongs to the Special Issue Global Navigation Satellite System for Maritime Applications)
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<p>Navigation satellite system with RTK application (own elaboration based on [<a href="#B12-jmse-12-02144" class="html-bibr">12</a>]), where: GPS/GLONASS—Global Positioning System/Global Navigation Satellite System, VTS—Vessel Traffic Services, E.G. TIDE SENSOR—exemplary tide parameters sensor, E-SEA CAT–receiver of the satellite and reference station signals.</p>
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<p>The algorithm of the research methodology.</p>
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<p>Speed of ships contact with quay fenders during mooring operations depending on ships’ displacement, where red line—calculated speed of ships contacts with fenders, dots—data received using RTK application, and triangles—data received using DGPS.</p>
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<p>The required absorption energy of the quay fenders (<math display="inline"><semantics> <mrow> <msub> <mrow> <mi>E</mi> </mrow> <mrow> <mi>a</mi> <mi>b</mi> <mi>s</mi> </mrow> </msub> <mo>×</mo> <mn>10</mn> </mrow> </semantics></math>, kNm) depending on the speed of the ship during contact with the quay fender and the displacement of the ship (<math display="inline"><semantics> <mrow> <mo>∆</mo> <mo>×</mo> <mn>1000</mn> </mrow> </semantics></math>, t) for different measurement accuracy: PIANC—PIANC recommendations; RTK—using the RTK application; DGPS—using the DGPS.</p>
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<p>The visualisation of experiment carried out by simulator using data provided by RTK application (own elaboration based on [<a href="#B12-jmse-12-02144" class="html-bibr">12</a>]).</p>
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<p>Parameters of POST PANAMAX tanker movement during mooring operation using RTK system (own elaboration based on [<a href="#B12-jmse-12-02144" class="html-bibr">12</a>]), where red line—transverse speed, m/s; blue line—longitudinal speed, knots; green line—propulsion engine power, HP.</p>
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<p>Comparative index calculated based on data achieved using RTK application (red line) and DGPS (green line) and based on experiments on real ships depending on ships displacement, where triangle—results achieved for bulk cargo ships using data provided by DGPS; circle—results achieved for bulk cargo ships using data provided by RTK application; hexagon—results achieved for container ships using data provided by DGPS; cross—results achieved for container ships using data provided by RTK application.</p>
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14 pages, 1129 KiB  
Review
A Review of Limbic System-Associated Membrane Protein in Tumorigenesis
by Kayleigh Wittmann Sinopole, Kevin Babcock, Albert Dobi and Gyorgy Petrovics
Biomedicines 2024, 12(11), 2590; https://doi.org/10.3390/biomedicines12112590 - 13 Nov 2024
Viewed by 796
Abstract
Purpose of Review: This review aims to describe the role of limbic system-associated membrane protein (LSAMP) in normal- and pathophysiology, and its potential implications in oncogenesis. We have summarized research articles reporting the role of LSAMP in the development of a variety of [...] Read more.
Purpose of Review: This review aims to describe the role of limbic system-associated membrane protein (LSAMP) in normal- and pathophysiology, and its potential implications in oncogenesis. We have summarized research articles reporting the role of LSAMP in the development of a variety of malignancies, such as clear cell renal cell carcinoma, prostatic adenocarcinoma, lung adenocarcinoma, osteosarcoma, neuroblastoma, acute myeloid leukemia, and epithelial ovarian cancer. We also examine the current understanding of how defects in LSAMP gene function may contribute to oncogenesis. Finally, this review discusses the implications of future LSAMP research and clinical applications. Recent Findings: LSAMP has been originally described as a surface adhesion glycoprotein expressed on cortical and subcortical neuronal somas and dendrites during the development of the limbic system. It is categorized as part of the IgLON immunoglobulin superfamily of cell-adhesion molecules and is involved in regulating neurite outgrowth and neural synapse generation. LSAMP is both aberrantly expressed and implicated in the development of neuropsychiatric disorders due to its role in the formation of specific neuronal connections within the brain. Additionally, LSAMP has been shown to support brain plasticity via the formation of neuronal synapses and is involved in modulating the hypothalamus in anxiogenic environments. In murine studies, the loss of LSAMP expression was associated with decreased sensitivity to amphetamine, increased sensitivity to benzodiazepines, increased hyperactivity in new environments, abnormal social behavior, decreased aggressive behavior, and decreased anxiety. Findings have suggested that LSAMP plays a role in attuning serotonergic activity as well as GABA activity. Given its importance to limbic system development, LSAMP has also been studied in the context of suicide. In malignancies, LSAMP may play a significant role as a putative tumor suppressor, the loss of which leads to more aggressive phenotypes and mortality from metastatic disease. Loss of the LSAMP gene facilitates epithelial-mesenchymal transition, or EMT, where epithelial cells lose adhesion and gain the motile properties associated with mesenchymal cells. Additionally, LSAMP and the function of the RTK pathway have been implicated in tumorigenesis through the modulation of RTK expression in cell membranes and the activation of second messenger pathways and β-catenin. Summary: Beyond its many roles in the limbic system, LSAMP functions as a putative tumor suppressor protein. Loss of the LSAMP gene is thought to facilitate epithelial-mesenchymal transition, or EMT, where cells lose adhesion and migrate to distant organs. LSAMP’s role in modulating RTK activity and downstream ERK and Akt pathways adds to a large body of data investigating RTK expression in oncogenesis. The characteristics of LSAMP defects and their association with aggressive and metastatic disease are evident in reports on clear cell renal cell carcinoma, prostatic adenocarcinoma, lung adenocarcinoma, osteosarcoma, neuroblastoma, acute myeloid leukemia, and epithelial ovarian cancer. Full article
(This article belongs to the Special Issue Advanced Cancer Diagnosis and Treatment: Second Edition)
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<p>LSAMP in prostate cancer. The loss of LSAMP in the cell membrane upregulates RTK signaling and downstream ERK and Akt pathways. Deletion in LSAMP results in the loss of adhesion to normal extracellular matrix elements, leading to detachment of a nest of tumor cells from the primary tumor site and attachment to lymphatic or vascular endothelium where the LSAMP-deleted cancer cells spread to distant sites, such as lymph node and bone. Abbreviations: ERK, extracellular signal-regulated kinase; FAK, focal adhesion kinase; MEK, mitogen-activated protein kinase; RTK, receptor tyrosine kinase.</p>
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<p>LSAMP losses in the setting of cancer may increase the expression of receptor tyrosine kinases on the surface of the cell, leading to the increased activation of tumorigenic ERK and Akt pathways and increased activation of β-catenin.</p>
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