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23 pages, 8591 KiB  
Article
Research on the Construction Method of Cultural Visiting Routes Based on the Coupling Coordination Degree Model: A Case Study of Zhongshan Road Historical and Cultural Block, Xiamen, China
by Yue Cai, Mengru Zhou and Quhang Wu
Buildings 2024, 14(12), 4069; https://doi.org/10.3390/buildings14124069 (registering DOI) - 21 Dec 2024
Abstract
As a form of urban experience tour, cultural visiting routes provide an innovative approach to addressing the fragmentation and isolation of cultural resources in historic districts. This method emphasizes the systematic continuity of cultural spatial patterns and is currently implemented at both regional [...] Read more.
As a form of urban experience tour, cultural visiting routes provide an innovative approach to addressing the fragmentation and isolation of cultural resources in historic districts. This method emphasizes the systematic continuity of cultural spatial patterns and is currently implemented at both regional and urban scales. However, methods for constructing cultural visiting routes at the block scale still require further investigation. And there is a notable lack of studies that consider the integration of multiple systems in cultural visiting routes. Consequently, this research proposes a novel approach for constructing cultural visiting routes based on the coupling and coordination of multiple systems. Using the Zhongshan Road Historical and Cultural Block in Xiamen, China, as a case study, this study develops cultural visiting routes by analyzing the degree of coupling coordination between cultural resource value and the street walking environment. The findings are as follows: (1) The cultural visiting routes within the Zhongshan Road Block can be categorized into three levels: the first-level routes, represented by Zhongshan Road; the second-level routes, represented by Datong Road; and the third-level routes, represented by Park South Road. (2) The first-level cultural visiting routes demonstrate a high degree of coupling coordination, with an optimization direction focused on refined updates. The second-level routes exhibit a medium degree of coupling coordination, indicating an urgent need to address issues across the entire road section. The third-level routes reveal a low degree of coupling coordination, necessitating attention to the enhancement of cultural visiting elements. This study emphasizes that the construction of block-scale cultural visiting routes must prioritize not only the extraction of value from cultural resources but also the influence of the street walking environment. Full article
18 pages, 13069 KiB  
Article
Horizontal-Transverse Coherence of Bottom-Received Acoustic Field in Deep Water with an Incomplete Sound Channel
by Qianyu Wang, Zhaohui Peng, Bo Zhang, Feilong Zhu, Wenyu Luo, Tongchen Wang, Lingshan Zhang and Junjie Mao
J. Mar. Sci. Eng. 2024, 12(12), 2354; https://doi.org/10.3390/jmse12122354 (registering DOI) - 21 Dec 2024
Abstract
The horizontal-transverse coherence of low-frequency (300 Hz) and long-range (10–40 km) acoustic fields near the bottom in deep water is investigated based on experimental data obtained from the South China Sea. The results indicate that the horizontal-transverse coherence length exhibits a strong dependence [...] Read more.
The horizontal-transverse coherence of low-frequency (300 Hz) and long-range (10–40 km) acoustic fields near the bottom in deep water is investigated based on experimental data obtained from the South China Sea. The results indicate that the horizontal-transverse coherence length exhibits a strong dependence on the source-receiver distance, with fluctuations consistent with sound intensity trends. In high-intensity regions, the horizontal-transverse coherence is relatively high, with a coherence length exceeding 600 λ, where λ is the acoustic wavelength, whereas in low-intensity regions, the horizontal-transverse coherence decreases significantly, with the coherence length shortening to 10–30 λ. The physical mechanisms underlying the horizontal-transverse coherence are analyzed using the ray theory. In high-intensity regions, the energy of the dominant ray (the ray with the highest energy) accounts for over 70% of the total energy of the rays, exerting a decisive influence on the coherence coefficient and leading to stable horizontal-transverse coherence in the received acoustic field. In contrast, in low-intensity regions, the energy distribution is dispersed, and when amplitude and phase disturbances due to spatial inhomogeneity are introduced, the horizontal coherence deteriorates significantly. The numerical simulations are also performed, and the results are consistent with the experimental observations. Full article
(This article belongs to the Section Ocean Engineering)
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<p>The configuration of the experiment.</p>
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<p>Measured seafloor topography of the experimental area and experimental tracks.</p>
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<p>Seafloor topography along the OT propagation path.</p>
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<p>Spatial spectrum of the experimental area’s seafloor topography: (<b>a</b>) Full-bandwidth spatial spectrum; (<b>b</b>) Spectrum curve.</p>
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<p>Measured sound-speed profiles: (<b>a</b>) Sound-speed profiles measured at two sites; (<b>b</b>) Difference in sound-speed profiles between the two sites.</p>
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<p>Time-domain waveforms of the hydrophone signals at different reception distances: (<b>a</b>) 11 km; (<b>b</b>) 24 km; (<b>c</b>) 30 km; (<b>d</b>) 36 km.</p>
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<p>SNR ratio of a single hydrophone.</p>
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<p>Transmission losses for four hydrophones and the corresponding seafloor topography along the sound propagation paths (290–310 Hz): (<b>a</b>) Transmission losses of four hydrophones; (<b>b</b>) Seafloor topography along the path from the sound source to the four hydrophones.</p>
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<p>Standard deviation of transmission losses of the HLA.</p>
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<p>Schematic diagram of the horizontal coherence of the received field.</p>
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<p>Horizontal-transverse coherence coefficients of the experimental-received acoustic field at different distances (290–310 Hz): (<b>a</b>) 10–39 km distance; (<b>b</b>) 31 km and 12.3 km distances.</p>
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<p>Horizontal-transverse coherence lengths of the experimental-received acoustic field (290–310 Hz).</p>
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<p>The transmission losses of simulated- and experimental-received acoustic fields: (<b>a</b>) 290–310 Hz; (<b>b</b>) 390–410 Hz.</p>
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<p>Horizontal-transverse coherence coefficients of the simulated seabed-received acoustic field (290–310 Hz).</p>
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<p>Horizontal-transverse coherence length of the simulated seabed-received acoustic field (290–310 Hz).</p>
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<p>Arrival time structures at different reception distances: (<b>a</b>) 24 km; (<b>b</b>) 30 km.</p>
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<p>The ratio of the main ray energy to the total energy of the rays.</p>
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<p>Spatially filtered topography: (<b>a</b>) Large-period uneven topography (period greater than 40 km); (<b>b</b>) Small-period uneven topography (period less than 5 km).</p>
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<p>Horizontal coherence coefficients of the simulated acoustic field (290–310 Hz): (<b>a</b>) Without the addition of small-period uneven topography; (<b>b</b>) With the addition of small-period uneven topography at 0.5× amplitude; (<b>c</b>) With the addition of small-period uneven topography at 1× amplitude; (<b>d</b>) With the addition of small-period uneven topography at 2× amplitude.</p>
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22 pages, 4369 KiB  
Article
Axial Compressive Behavior of Outer Square Inner Circular Spontaneous Combustion Coal Gangue Concrete-Filled Double-Skin Steel Tubular Stub Column
by Jinli Wang, Chunyuan Wang, Zhe Gao, Haoyan Wei, Zhengping Hu and Weiwei Wang
Buildings 2024, 14(12), 4064; https://doi.org/10.3390/buildings14124064 (registering DOI) - 21 Dec 2024
Abstract
Utilizing crushed spontaneous combustion coal gangue as a coarse aggregate in concrete preparation effectively reduces reliance on natural resources and mitigates environmental pollution; however, the suboptimal workability of spontaneous combustion coal gangue coarse aggregate concrete (SCG-CAC) limits its engineering applications. To address this [...] Read more.
Utilizing crushed spontaneous combustion coal gangue as a coarse aggregate in concrete preparation effectively reduces reliance on natural resources and mitigates environmental pollution; however, the suboptimal workability of spontaneous combustion coal gangue coarse aggregate concrete (SCG-CAC) limits its engineering applications. To address this issue, this study places SCGCAC at the center of a CFDST (Concrete-Filled Double-Skin Steel Tubular) stub column. Through finite element modeling validated for reliability, this study examines the structural mechanical response to axial loading, along with the effects of various parameters. The analysis encompasses parameters such as the strength of the core SCGCAC (fc,i), the strength of the sandwiched concrete (fc,o), the yield strength of the outer steel tube (fy,o), the yield strength of the inner steel tube (fy,i), the width-to-thickness ratio (B/to), the diameter-to-thickness ratio of the inner tube (D/ti), and the diameter-to-width ratio of the outer tube (D/B). Results show that this structural configuration significantly enhances the core SCGCAC ultimate bearing capacity, and increases in D/ti, fc,i, fc,o, fy,i, and B/to all lead to an increase in the peak load. Particularly, when D/ti increases from 28.57 to 80, the peak load increases by 42.72%. However, changes in fy,o and D/B have no significant effect on the peak load. Full article
(This article belongs to the Special Issue Sustainable and Low-Carbon Building Materials and Structures)
23 pages, 3955 KiB  
Article
Fear Generalization Towards a Stimulus and Context and the Impact of Attention Bias
by Haote Fu, Keying Luo, Zishan Wu, Ruiqi Diao and Xifu Zheng
Behav. Sci. 2024, 14(12), 1230; https://doi.org/10.3390/bs14121230 (registering DOI) - 20 Dec 2024
Abstract
Fear overgeneralization is a prevalent clinical symptom of anxiety disorders. Various research studies have demonstrated that attention plays a crucial role in fear generalization. Moreover, fear is not only generalized to the stimulus, but individuals may also exhibit a certain degree of fear [...] Read more.
Fear overgeneralization is a prevalent clinical symptom of anxiety disorders. Various research studies have demonstrated that attention plays a crucial role in fear generalization. Moreover, fear is not only generalized to the stimulus, but individuals may also exhibit a certain degree of fear generalization to the context. This research investigates whether fear generalizes to stimuli and context simultaneously and the potential impact of attentional bias. The study involved two conditioned fear factors, a stimulus and context, with visual image materials combining both elements. Participants were instructed to focus on global attention in Study 1, while in Study 2, they were divided into groups based on their attention bias direction towards either stimuli or context during the fear acquisition phase. This study found that participants exhibited generalized conditioned fear to both stimuli and context, regardless of attentional bias. Additionally, participants showed a lower degree of generalization in the area to which they directed their attention during the acquisition phase. The results of this research reveal the differing expressions of fear generalization towards context and stimuli, highlighting the important role of attention in this process. Full article
18 pages, 5399 KiB  
Article
Numerical Simulation on the Frequency Response of 3-D Reef–Seawater–Seabed Coupling System Under Seismic Excitation
by Liwen Yan, Xingwei Guo, Xunhua Zhang and Jianghao Qi
J. Mar. Sci. Eng. 2024, 12(12), 2343; https://doi.org/10.3390/jmse12122343 - 20 Dec 2024
Abstract
The seismic safety evaluation of artificial reef islands is of great significance for ensuring their long-term stable operation and the safety of residents’ lives. However, due to an insufficient understanding of coral reefs’ basic characteristics, current research on coral reef seismic stability neglects [...] Read more.
The seismic safety evaluation of artificial reef islands is of great significance for ensuring their long-term stable operation and the safety of residents’ lives. However, due to an insufficient understanding of coral reefs’ basic characteristics, current research on coral reef seismic stability neglects the influence of pore water pressure and abnormal reef layers formed during geological evolution. To further study the impact of earthquakes on coral reefs in the South China Sea, this paper takes Meiji Reef as the research object, establishes a 3-D model containing a saturated coral reef–seawater–seabed coupling system, and considers the influence of abnormally high-porosity weathered layers to study the seismic response of the coupling system in the frequency domain. The results show that ignoring the influence of pore water pressure will underestimate the impact of earthquakes on coral reefs. The seismic waves with a frequency of 4.1 Hz in the horizontal direction have a significant impact on the reef, and the side parallel to the direction of wave propagation is more affected, while the side perpendicular to the direction of wave propagation is less affected. The reef flat near the seawater side is less affected by earthquakes, while that on the lagoon side is more affected. Highly porous, weathered layers increase the seismic impact on reef flats. Full article
(This article belongs to the Section Marine Environmental Science)
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<p>(<b>a</b>) Plate tectonic context of the Western Pacific region, modified from [<a href="#B9-jmse-12-02343" class="html-bibr">9</a>]. (<b>b</b>) Distribution of internal faults in the SCS, modified from [<a href="#B9-jmse-12-02343" class="html-bibr">9</a>,<a href="#B10-jmse-12-02343" class="html-bibr">10</a>]. (<b>c</b>) Geometric shape of the Meiji Reef. The A, B, C, and D represent research points at different locations of the reef, and the number 1 and 2 represent the outer reef flat and the reef flat on one side of the lagoon, respectively.</p>
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<p>Three geophysical profiles are in <a href="#jmse-12-02343-f001" class="html-fig">Figure 1</a>c, and the changes in minerals and lithology of the Meiji Reef are shown in depth. (<b>a</b>–<b>c</b>) Ambient noise tomography profiles. (<b>d</b>) Changes in minerals and lithology of the Meiji Reef with depth.</p>
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<p>(<b>a</b>) 3-D Meiji Reef–seawater–seabed coupling system model. The stratification of coral reef is shown in (<b>b</b>). (<b>b</b>) The section of the 3-D model along the x-z direction in (<b>a</b>), and shows the stratification and boundary conditions of the model.</p>
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<p>Flowchart of numerical implementation.</p>
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<p>The variation of acceleration magnitude with frequency in different areas of the reef flat; the points are in <a href="#jmse-12-02343-f001" class="html-fig">Figure 1</a>c. (<b>a</b>) Horizontal x-direction excitation. (<b>b</b>) Horizontal y-direction excitation. (<b>c</b>) Vertical excitation.</p>
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<p>The acceleration magnitude at different depths of point A, point B, point C, and point D in <a href="#jmse-12-02343-f001" class="html-fig">Figure 1</a>c.</p>
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<p>The variation of acceleration magnitude with frequency at different positions of the reef flat, and the positions of each point are in <a href="#jmse-12-02343-f001" class="html-fig">Figure 1</a>c.</p>
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<p>The 3-D distribution of hydrodynamic pressure and acceleration amplitude at the peak frequency. (<b>a</b>) Horizontal x-direction excitation at the frequency of 4.1 Hz. (<b>b</b>) Horizontal y-direction excitation at the frequency of 4.1 Hz. (<b>c</b>) Vertical excitation at the frequency of 5.1 Hz.</p>
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<p>The acceleration magnitude changes with frequency at point A, point B, point C, and point D in <a href="#jmse-12-02343-f001" class="html-fig">Figure 1</a>c when the coral reef is saturated with porous elastic material or single-phase linear elastic material. Specifically, the solid lines represent saturated porous materials, while the dashed lines represent single-phase linear elastic materials.</p>
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<p>The 3-D distribution of hydrodynamic pressure and acceleration amplitude of horizontal x-direction excitation at the frequency of 4.1 Hz when the reef is a single-phase linear elastic solid material.</p>
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<p>Distribution of acceleration amplitudes of reef body in the horizontal plane. (<b>a</b>) The presence of highly porous weathered layers. (<b>b</b>) The rectangular box in <a href="#jmse-12-02343-f008" class="html-fig">Figure 8</a>a. (<b>c</b>) There is no high-porosity weathering layer. (<b>d</b>) The rectangular box in <a href="#jmse-12-02343-f008" class="html-fig">Figure 8</a>c.</p>
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<p>(<b>a</b>) Surface geometry, weathering layers, and line positions of the Meiji Reef. (<b>b</b>,<b>c</b>) The acceleration magnitudes of the two lines.</p>
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<p>Acceleration magnitudes of reef flat above different types of weathered layers. The black solid lines are the acceleration magnitude of non-weathered layer, and the red dashed lines are the acceleration magnitude in the initial situation. (<b>a</b>) Change in the depth. (<b>b</b>) Change in the area. (<b>c</b>) Change in the thickness. (<b>d</b>) Change in the weathering degree.</p>
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19 pages, 35110 KiB  
Article
Data-Independent Acquisition-Based Quantitative Proteomics Analysis of Fertile Red Eggs and Spermatozoa in Hermatypic Coral Galaxea fascicularis: Revealing Key Proteins Related to Gamete Maturation and Fertilization
by Yinyin Zhou, Jingzhao Ke, Lingyu Zheng, Shaoyang Mo, Xiangbo Liu, He Zhao, Wentao Zhu and Xiubao Li
J. Mar. Sci. Eng. 2024, 12(12), 2341; https://doi.org/10.3390/jmse12122341 - 20 Dec 2024
Abstract
Sexually propagated scleractinian corals are in high demand for coral reef restoration. However, for threatened reef-building corals, many of the molecular mechanisms related to their reproduction remain largely unknown, which forms a major bottleneck in the large-scale cultivation of sexually reproducing corals. In [...] Read more.
Sexually propagated scleractinian corals are in high demand for coral reef restoration. However, for threatened reef-building corals, many of the molecular mechanisms related to their reproduction remain largely unknown, which forms a major bottleneck in the large-scale cultivation of sexually reproducing corals. In this study, we analyzed the proteomic signatures of red eggs and spermatozoa from the ecologically significant coral Galaxea fascicularis, using a data-independent acquisition mass spectrometry (DIA-MS) method. A total of 7741 and 7279 proteins from mature red eggs and spermatozoa were identified, respectively. Among these proteins, 596 proteins were spermatozoa-specific and 1056 were egg-specific. Additionally, a total of 4413 differentially abundant proteins (DAPs) were identified, among which 3121 proteins were up-regulated in red eggs and 1292 proteins were up-regulated in spermatozoa. Furthermore, anenrichment analyses showed that DAPs identified in red eggs were mainly involved in the progesterone-mediated oocyte maturation pathway and lectin pathway; and DAPs detected in spermatozoa were mainly involved in the insulin secretion pathway and metabolic pathways for the generation of energy. This result will contribute to the discovery of the intrinsic regulation pathway of gamete maturation and fertilization. Furthermore, at least 57 proteins associated with gamete maturation and reproduction were identified, including the red fluorescent protein (RFP), vitellogenin proteins (VG), the egg protein (EP), the testis-specific serine/threonine-protein kinase family (TSSKs), and the EF-hand Ca2+-binding protein family (EFHC1 and EFHC2). Particularly, the third yolk protein EUPHY was reported for the first time in G. fascicularis. In conclusion, this study unveiled groundbreaking molecular insights into coral sexual reproduction, paving the way for more effective conservation and sustainable development of coral reef ecosystems Full article
(This article belongs to the Section Marine Biology)
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<p><span class="html-italic">G. fascicularis</span> spawning events. (<b>A</b>) Spawning female <span class="html-italic">G. fascicularis</span> colonies; (<b>B</b>) spawning hermaphroditic colonies.</p>
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<p>The morphology of mature fertile gametes. (<b>A</b>) and (<b>D</b>) refer to the dissociated red egg mass from female colonies and egg–sperm bundles from hermaphroditic colonies, respectively. (<b>B</b>) and (<b>C</b>) represent the microstructure of red eggs and their surface microvilli under scanning electron microscopy; scale bars = 50 μm and 5 μm, respectively. (<b>E</b>) and (<b>F</b>) represent the microstructure of mature spermatozoa; the cytoplasmic collar is indicated by an arrow; scale bars = 5 μm and 1 μm, respectively.</p>
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<p>(<b>A</b>) The distribution of unique peptides; the <span class="html-italic">X</span>-axis is the number of unique peptides for each protein, and the <span class="html-italic">Y</span>-axis is the number of proteins. (<b>B</b>) The mass distribution of identified proteins. (<b>C</b>) Proteins identified in red eggs and spermatozoa.</p>
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<p>Distribution information of DAPs. (<b>A</b>) Volcano plot for DAPs in <span class="html-italic">G. fascicularis</span> proteome. (<b>B</b>) Correlation clustering heat map based on DAP abundance profiles of six samples.</p>
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<p>Results of enrichment analysis of DAPs. (<b>A</b>,<b>C</b>) represent GO enrichment bar plots and KEGG pathway enrichment bubble plots of significant DAPs in red eggs; (<b>B</b>,<b>D</b>) represent GO enrichment bar plots and KEGG pathway enrichment bubble plots of significant DAPs in spermatozoa.</p>
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<p>Protein–protein interaction networks based on 20 enriched KEGG pathways that related to the cell cycle and endocrine and energy metabolism. The different colors represent the network degree value of the protein. The inner circle of the PPI network reveals key proteins and their correlations, while the outer circle represents non-hub proteins.</p>
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<p>A chord plot of the functional classification of 18 candidate proteins in red eggs (<b>A</b>) and spermatozoa (<b>B</b>). The left half represents 18 candidate proteins, and the right half represents the corresponding GO terms, which are closely related to gamete maturation and reproduction.</p>
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<p>(<b>A</b>) Three-dimensional structure simulation of three proteins (from left to right, NOTC1 of <span class="html-italic">O. faveolate</span>, Euphy of <span class="html-italic">F. ancora</span>, and EUPHY of <span class="html-italic">G. fascicularis</span>). (<b>B</b>) Protein domain comparison among three proteins. (<b>C</b>) Phylogenetic analysis of EUPHY protein using neighbor-joining method with 1000 bootstrap replications.</p>
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19 pages, 983 KiB  
Article
Effects and Mechanisms of Higher Education Development on Intelligent Productivity Advancement: An Empirical Analysis of Provincial Panel Data in China
by Pan Liang and Yuancao Chen
Sustainability 2024, 16(24), 11197; https://doi.org/10.3390/su162411197 - 20 Dec 2024
Abstract
In the digital economy era, artificial intelligence implementation has accelerated the intellectualization of productive forces, emphasizing the critical relationship between higher education and this transformation. As the primary conduit for developing advanced human capital, the mechanisms through which higher education adapts to and [...] Read more.
In the digital economy era, artificial intelligence implementation has accelerated the intellectualization of productive forces, emphasizing the critical relationship between higher education and this transformation. As the primary conduit for developing advanced human capital, the mechanisms through which higher education adapts to and promotes emerging productive forces require systematic examination. This research establishes a theoretical framework demonstrating the synchronous relationship between higher education development and productive force intellectualization, proposing that higher education development provides essential momentum for this transformation. The framework validation employed panel data analysis from 31 Chinese provinces (2012–2022) using fixed-effects (FE) and mediation effect models. The FE model reveals a positive effect coefficient of 1.561 for higher education development on intelligent productive force enhancement (p < 0.01), indicating substantial promotion of productive force intellectualization without saturation effects. Mediation effect analysis confirms the significance of three mediating factors—labor, capital, and technology (p < 0.05)—validating the influence pathways through human capital, material support, and research innovation mechanisms. The research innovation mechanism demonstrates premier efficacy, while material support mechanisms indicate optimization potential. The human capital mechanism, despite its promise, exhibits implementation time lags. These findings suggest prioritizing intelligent technology talent development, enhancing research investment, and strengthening innovation capabilities to advance higher education’s role in productive force intellectualization. Full article
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<p>Operational mechanism schematic (source: author’s synthesis and analysis).</p>
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<p>Research hypothesis logic schematic (source: author’s synthesis and analysis).</p>
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<p>Higher education institutional capability matrix (source: author’s synthesis and analysis).</p>
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17 pages, 2717 KiB  
Review
Enzymatic Regulation of the Gut Microbiota: Mechanisms and Implications for Host Health
by Zipeng Jiang, Liang Mei, Yuqi Li, Yuguang Guo, Bo Yang, Zhiyi Huang and Yangyuan Li
Biomolecules 2024, 14(12), 1638; https://doi.org/10.3390/biom14121638 - 20 Dec 2024
Abstract
The gut microbiota, a complex ecosystem, is vital to host health as it aids digestion, modulates the immune system, influences metabolism, and interacts with the brain-gut axis. Various factors influence the composition of this microbiota. Enzymes, as essential catalysts, actively participate in biochemical [...] Read more.
The gut microbiota, a complex ecosystem, is vital to host health as it aids digestion, modulates the immune system, influences metabolism, and interacts with the brain-gut axis. Various factors influence the composition of this microbiota. Enzymes, as essential catalysts, actively participate in biochemical reactions that have an impact on the gut microbial community, affecting both the microorganisms and the gut environment. Enzymes play an important role in the regulation of the intestinal microbiota, but the interactions between enzymes and microbial communities, as well as the precise mechanisms of enzymes, remain a challenge in scientific research. Enzymes serve both traditional nutritional functions, such as the breakdown of complex substrates into absorbable small molecules, and non-nutritional roles, which encompass antibacterial function, immunomodulation, intestinal health maintenance, and stress reduction, among others. This study categorizes enzymes according to their source and explores the mechanistic principles by which enzymes drive gut microbial activity, including the promotion of microbial proliferation, the direct elimination of harmful microbes, the modulation of bacterial interaction networks, and the reduction in immune stress. A systematic understanding of enzymes in regulating the gut microbiota and the study of their associated molecular mechanisms will facilitate the application of enzymes to precisely regulate the gut microbiota in the future and suggest new therapeutic strategies and dietary recommendations. In conclusion, this review provides a comprehensive overview of the role of enzymes in modulating the gut microbiota. It explores the underlying molecular and cellular mechanisms and discusses the potential applications of enzyme-mediated microbiota regulation for host gut health. Full article
(This article belongs to the Special Issue Novel Antimicrobial Strategies for Animal Health)
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<p>Classification of enzymes and their functions.</p>
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<p>Mechanisms of enzyme regulation of gut microbes. The main ways in which enzymes regulate the intestinal microbiota include (1) stimulation of microbial growth: enzymes can stimulate the growth of beneficial gut microbes; (2) direct microbial killing: certain enzymes can kill gut microbes directly; (3) interference with microbial networks: enzymes can disrupt microbial networks, such as quorum sensing (QS), which is a communication system used by microbes to coordinate their behavior; and (4) alleviating the immune stress: the use of enzymes to reduce the occurrence of immune stress is through the degradation of resemble immunogenic substances.</p>
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18 pages, 5724 KiB  
Article
A Wideband dB-Linear Analog Baseband for a Millimeter-Wave Receiver with Error Compensation in 40 nm CMOS Technology
by Shiwei Hu, Hao Wang and Yanjie Wang
Electronics 2024, 13(24), 5012; https://doi.org/10.3390/electronics13245012 - 20 Dec 2024
Abstract
This paper presents a low power wideband dB-linear analog baseband (ABB) circuit for a millimeter-wave (mmW) wireless receiver in 40 nm CMOS technology. The proposed ABB system consists of a multi-stage variable gain amplifier (VGA) and a low-pass filter (LPF). The 5-stage VGA [...] Read more.
This paper presents a low power wideband dB-linear analog baseband (ABB) circuit for a millimeter-wave (mmW) wireless receiver in 40 nm CMOS technology. The proposed ABB system consists of a multi-stage variable gain amplifier (VGA) and a low-pass filter (LPF). The 5-stage VGA is composed of two variable gain units followed by three fixed gain units with DC offset cancellation (DCOC). The first variable gain unit with a self-compensated transistor pair and compact active inductor load is designed for dB-linear functionality and bandwidth extension, respectively. Moreover, a proposed error compensation method is applied to the second cascaded variable gain unit for further dB-linear gain error correction. A 4th-order Butterworth transconductance-capacitance (Gm-C) LPF with flipped source follower (FSF) as an input transconductance stage for linearity enhancement is designed after the VGA stage. The prototype chip is implemented, and measurement results show a dB-linear gain range from −18 to 26 dB with less than 0.5 dB-linear gain error with a bandwidth of 4 GHz. The VGA and LPF consume 8.3 mW and 3 mW, respectively, under a 1 V power supply, while the entire ABB occupies an area of 0.94 mm2 with an active core area of only 0.045 mm2. Full article
(This article belongs to the Special Issue RF/MM-Wave Circuits Design and Applications, 2nd Edition)
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<p>Wireless receiver block diagram.</p>
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<p>Typical dB-linear VGA topologies. (<b>a</b>) Digital controlled VGA. (<b>b</b>) Current steering topology. (<b>c</b>) Gilbert-cell-based topology. (<b>d</b>) Exponential I-V function-based topology.</p>
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<p>Complete block diagram of the proposed ABB.</p>
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<p>Schematic of variable gain unit 1.</p>
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<p>Schematic of variable gain unit 2.</p>
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<p>(<b>a</b>) Simulated gain characteristics of unit 1, unit 2 and VGA_cascade with different widths of M<sub>11</sub> transistor. (<b>b</b>) Simulated dB-linear gain error of VGA_cascade with different widths of M<sub>11</sub> transistor.</p>
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<p>(<b>a</b>) Simulated gain range with and without the error compensation method. (<b>b</b>) Simulated dB-linear gain error with and without the error compensation method.</p>
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<p>Simulated dB-linear gain error under different process corners, temperatures, and power supply voltages.</p>
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<p>(<b>a</b>) Simulated gain error curves from Monte Carlo simulations (100 runs). (<b>b</b>) Simulated maximum dB-linear error histogram of 100 Monte Carlo simulation results.</p>
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<p>(<b>a</b>) Schematic of FGA. (<b>b</b>) Schematic of CMFB circuit.</p>
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<p>Frequency response of the FGA.</p>
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<p>(<b>a</b>) 1st NMOS Biquadratic cell. (<b>b</b>) 2nd PMOS Biquadratic cell.</p>
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<p>Frequency response of the LPF.</p>
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<p>Z<sub>11</sub> and K<sub>f</sub> of LPF with and without MOS capacitors.</p>
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<p>Frequency response with different VFB_bias.</p>
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<p>(<b>a</b>) Chip microphotograph. (<b>b</b>) Measurement setup.</p>
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<p>Measured S11, S22, and S12.</p>
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<p>(<b>a</b>) Measured frequency response at different control voltages. (<b>b</b>) Measured bandwidth and OOB rejection at different control voltages. (<b>c</b>) Measured dB-linear gain range at different frequencies. (<b>d</b>) Measured dB-linear gain at different frequencies.</p>
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<p>(<b>a</b>) Measured frequency response at different control voltages. (<b>b</b>) Measured bandwidth and OOB rejection at different control voltages. (<b>c</b>) Measured dB-linear gain range at different frequencies. (<b>d</b>) Measured dB-linear gain at different frequencies.</p>
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<p>(<b>a</b>) Measured IP1dB at 1 GHz. (<b>b</b>) Simulated NF of ABB at different gains.</p>
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11 pages, 902 KiB  
Article
Occurrence, Bioaccumulation, and Human Exposure Risk of the Antiandrogenic Fluorescent Dye 7-(Dimethylamino)-4-methylcoumarin and 7-(Diethylamino)-4-methylcoumarin in the Dongjiang River Basin, South China
by Yufeng Lai, Yin Huang, Danlin Yang, Jingchuan Xue, Runlin Chen, Rundong Peng, Siying Zhang, Yufei Li, Guochun Yang and Yuxian Liu
Toxics 2024, 12(12), 925; https://doi.org/10.3390/toxics12120925 - 20 Dec 2024
Abstract
Recently, 7-diethylamino-4-methylcoumarin (DEAMC) has been identified as a potent antiandrogenic compound in the surface water; however, little is known about the antiandrogenic potentials of other synthetic coumarins and their occurrence in the aquatic ecosystem. In this study, for the first time, we observed [...] Read more.
Recently, 7-diethylamino-4-methylcoumarin (DEAMC) has been identified as a potent antiandrogenic compound in the surface water; however, little is known about the antiandrogenic potentials of other synthetic coumarins and their occurrence in the aquatic ecosystem. In this study, for the first time, we observed that 7-dimethylamino-4-methylcoumarin (DAMC) elicited androgen receptor (AR) antagonistic activity with a 50% inhibitory concentration (IC50) of 1.46 µM, which is 14.3 times more potent than that observed for DEAMC (IC50 = 20.92 µM). We further collected abiotic (water and sediment) and biotic (plant, plankton, and fish) samples (n = 208) from a subtropical freshwater ecosystem, the Dongjiang River basin, in southern China, and determined the concentrations of the two coumarins in these samples. Overall, DAMC was the predominant compound found in the sediment, plant, algae, zooplankton, and fish muscle samples, with median concentrations at 0.189, 0.421, 0.832, 0.798, and 0.335 ng/g dry wt. (DW), respectively, although it was not detected in any surface water sample. For DEAMC, the median concentrations observed in the surface water, sediment, plant, algae, zooplankton, and fish muscle samples were 0.105 ng/L, 0.012, 0.051, 0.009, 0.008, and 0.181 ng/g DW, respectively. The bioaccumulation factor (BAF) values of DAMC and DEAMC in the algae, zooplankton, and fish muscle exceeded 5000 L/kg, suggesting that the two coumarins may have significant bioaccumulation potentials in aquatic biota. Additionally, the mean daily intake (EDI) of coumarins through fish consumption was estimated as 0.19 ng/kg BW/day for male toddlers. This is the first field study to illustrate the antiandrogenic potential of DAMC and document the widespread occurrence of the two synthetic coumarins in aquatic ecosystems. Full article
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<p>AR antagonistic activities of flutamide (FLU) (<b>a</b>), 7-diethylamino-4-methylcoumarin (DEAMC) (<b>b</b>), and 7-(dimethylamino)-4-methylcoumarin (DAMC) (<b>c</b>). FLU is used as the positive antagonist chemical for the AR antagonist activity assay.</p>
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<p>Concentrations of 7-(dimethylamino)-4-methylcoumarin (sublimation-purified) (DAMC) and 7-diethylamino-4-methylcoumarin (sublimation-purified) (DEAMC) in plants, algae, zooplankton, and fish (dry weight basis) (<b>a</b>) and compositional profiles of the coumarins in plants, algae, zooplankton, and fish (<b>b</b>). Spearman rank correlation coefficients were calculated using logarithmic transformed concentrations; only those samples with both chemicals detected were used in the analysis (*** <span class="html-italic">p</span> &lt; 0.001; ** <span class="html-italic">p</span> &lt; 0.01).</p>
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<p>LogBAF values for 7-(dimethylamino)-4-methylcoumarin (sublimation-purified) (DAMC) and 7-diethylamino-4-methylcoumarin (sublimation-purified) (DEAMC) in algae, zooplankton, and fish. The horizontal line in the box plot denotes the median and the small square in the box plot indicates the mean. It should be noted that logBAFs were calculated on the basis of dry weight-normalized concentrations.</p>
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14 pages, 1700 KiB  
Article
Preparation of Green Tea Polyphenol-Loaded Diacylglycerol Nanostructured Lipid Carrier Hydrogels and Their Activities Related to Skin Protection
by Zhini Zhu, Qiu Xia, Xinxia Zhan, Wenyuan Li, Xuan He, Bo Wang, Qizhi Zhou, Jian Huang and Yong Ye
Materials 2024, 17(24), 6227; https://doi.org/10.3390/ma17246227 - 20 Dec 2024
Abstract
Diacylglycerol (DAG) is a functional oil but is rarely used in the cosmetic industry because low solubility, susceptibility to leakage and low viscosity to skin are still the main hurdles. A novel diacylglycerol nanostructured lipid carrier hydrogel (GTP-DAG-NLC-GEL) loaded with green tea polyphenol [...] Read more.
Diacylglycerol (DAG) is a functional oil but is rarely used in the cosmetic industry because low solubility, susceptibility to leakage and low viscosity to skin are still the main hurdles. A novel diacylglycerol nanostructured lipid carrier hydrogel (GTP-DAG-NLC-GEL) loaded with green tea polyphenol (GTP) was designed and successfully prepared to broaden DAG’s application in cosmetics, which significantly improved GTP stability and skin stickiness of DAG. The results showed that DAG-NLC-GEL had good viscosity, which was 980 Pa·s when the shear rate was 5 rpm, and its viscosity decreased quickly with the increase in shear rate, making it easily expand on skin. Meanwhile, the encapsulation rate and drug loading of GTP in GDP-DAG-NLC-GEL reached 86.7% and 2.6%, respectively, and the DPPH free radicals scavenging rate and inhibition rate of the advanced glycation end-products (AGEs) were 85.46% and 89.72%, respectively, which indicate that GTP-DAG-NLC-GEL has significant skin sunscreen, antioxidant and anti-glycation activities. The GTP-loaded nanostructured lipid carrier hydrogel can be deemed to have great prospects for skin protection in cosmetics. Full article
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<p>TEM images of (<b>a</b>) DAG-NLC, (<b>b</b>) GTP-DAG-NLC, (<b>c</b>) GTP-DAG-NLC-GEL.</p>
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<p>(<b>a</b>) XRD pattern of GTP-DAG-NLC-GEL and GTP. (<b>b</b>) FT-IR spectra of GTP-DAG-NLC-GEL and GTP. (<b>c</b>) Thermogravimetric curves of GTP-DAG-NLC-GEL and GTP. (<b>d</b>) DSC curves of octanoic acid diglyceride and its DAG-NLC. (<b>e</b>) DSC curves of GTP-DAG-NLC and GTP-DAG-NLC-GEL.</p>
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<p>(<b>a</b>) XRD pattern of GTP-DAG-NLC-GEL and GTP. (<b>b</b>) FT-IR spectra of GTP-DAG-NLC-GEL and GTP. (<b>c</b>) Thermogravimetric curves of GTP-DAG-NLC-GEL and GTP. (<b>d</b>) DSC curves of octanoic acid diglyceride and its DAG-NLC. (<b>e</b>) DSC curves of GTP-DAG-NLC and GTP-DAG-NLC-GEL.</p>
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<p>Viscosity of GTP-DAG-NLC-GEL at different shear rates.</p>
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<p>(<b>a</b>) Standard curve of absorbance vs. concentration of GTP. (<b>b</b>) The cumulative release curves of GTP-DAG-NLC and GTP-DAG-NLC-GEL.</p>
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<p>Skin protection activity of GTP-DAG-NLC-GEL: (<b>a</b>) UV-vis absorbance spectra. (<b>b</b>) DPPH free radical scavenging rate. (<b>c</b>) Inhibition rate of AGE.</p>
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<p>Skin protection activity of GTP-DAG-NLC-GEL: (<b>a</b>) UV-vis absorbance spectra. (<b>b</b>) DPPH free radical scavenging rate. (<b>c</b>) Inhibition rate of AGE.</p>
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17 pages, 6381 KiB  
Article
Sample Augmentation Using Enhanced Auxiliary Classifier Generative Adversarial Network by Transformer for Railway Freight Train Wheelset Bearing Fault Diagnosis
by Jing Zhao, Junfeng Li, Zonghao Yuan, Tianming Mu, Zengqiang Ma and Suyan Liu
Entropy 2024, 26(12), 1113; https://doi.org/10.3390/e26121113 - 20 Dec 2024
Abstract
Diagnosing faults in wheelset bearings is critical for train safety. The main challenge is that only a limited amount of fault sample data can be obtained during high-speed train operations. This scarcity of samples impacts the training and accuracy of deep learning models [...] Read more.
Diagnosing faults in wheelset bearings is critical for train safety. The main challenge is that only a limited amount of fault sample data can be obtained during high-speed train operations. This scarcity of samples impacts the training and accuracy of deep learning models for wheelset bearing fault diagnosis. Studies show that the Auxiliary Classifier Generative Adversarial Network (ACGAN) demonstrates promising performance in addressing this issue. However, existing ACGAN models have drawbacks such as complexity, high computational expenses, mode collapse, and vanishing gradients. Aiming to address these issues, this paper presents the Transformer and Auxiliary Classifier Generative Adversarial Network (TACGAN), which increases the diversity, complexity and entropy of generated samples, and maximizes the entropy of the generated samples. The transformer network replaces traditional convolutional neural networks (CNNs), avoiding iterative and convolutional structures, thereby reducing computational expenses. Moreover, an independent classifier is integrated to prevent the coupling problem, where the discriminator is simultaneously identified and classified in the ACGAN. Finally, the Wasserstein distance is employed in the loss function to mitigate mode collapse and vanishing gradients. Experimental results using the train wheelset bearing datasets demonstrate the accuracy and effectiveness of the TACGAN. Full article
(This article belongs to the Section Multidisciplinary Applications)
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<p>Structures of GAN (<b>a</b>) and ACGAN (<b>b</b>).</p>
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<p>Structure of a transformer encoder network.</p>
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<p>Structure diagram of the multi-head self-attention.</p>
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<p>The framework of TACGAN.</p>
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<p>The architecture of generator transformer network.</p>
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<p>The architecture of discriminator transformer network.</p>
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<p>Picture of wheelset bearing experiment platform.</p>
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<p>Schematic of experiment platform.</p>
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<p>Photo of the test bearing. (<b>a</b>) N; (<b>b</b>) I; (<b>c</b>) O; (<b>d</b>) R.</p>
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<p>Data of wheelset fault bearings.</p>
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<p>Training process of TACGAN.</p>
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<p>Real data and generated data of TACGAN.</p>
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<p>Confusion matrix for classification accuracy. (<b>a</b>) Real samples. (<b>b</b>) Generated samples.</p>
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<p>Feature visualization results for TACGAN.</p>
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<p>MMD distance of the data with 100 km/h.</p>
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<p>Accuracy of the different datasets.</p>
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17 pages, 6242 KiB  
Article
Comparative Study on Growth Characteristics and Yield of Colored Rice Varieties
by Yiwen Song, Shaoxia Yang, Aaqil Khan, Hang Zhou, Zhiyuan Sun, Jiashuang Wu, Linchong Ding, Jian Xiong, Wanqi Mei, Naijie Feng and Dianfeng Zheng
Agronomy 2024, 14(12), 3038; https://doi.org/10.3390/agronomy14123038 - 19 Dec 2024
Abstract
In recent years, pigment rice has been the focus of much attention due to its high nutritional value and ornamental value. To gain a better understanding of pigmented rice, we studied the morphological, physiological, and yield characteristics of four varieties, i.e., light green [...] Read more.
In recent years, pigment rice has been the focus of much attention due to its high nutritional value and ornamental value. To gain a better understanding of pigmented rice, we studied the morphological, physiological, and yield characteristics of four varieties, i.e., light green (LG), deep purple (DP), black-purple (BP), and white rice (WR), as plant material. The field experiment was conducted using a randomized complete block design at Guangdong ocean university research farm during 2023 and 2024. The data of the pigmented rice varieties regarding their morphological, physiological, and antioxidant traits were compared with CK. Leaf area and dry matter accumulation were significantly higher in BP than in the other rice varieties, with BP being the best performer and WR being the worst. The internode length, leaf area, and dry matter accumulation of BP were markedly higher than the rest of the rice varieties. The chlorophyll content of BP was significantly higher. The antioxidant enzyme activities were significantly different among all the varieties. The antioxidant enzyme activities of BP were significantly higher than those of the other rice varieties. Seed yield varied significantly, with BP showing the highest yield. The morphophysiological characteristics of BP and DP suggest that these two varieties can alleviate the response to salinity stress, thereby increasing rice yield. Full article
(This article belongs to the Section Innovative Cropping Systems)
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<p>Hours of sunshine, rainfall, maximum and minimum temperatures, 2023.</p>
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<p>Pictures of rice growing in different varieties of fields (<b>A</b>–<b>D</b>); light green rice, LG (<b>A</b>); purple leaf rice, DP (<b>B</b>); black-purple leaf rice, BP (<b>C</b>); and white rice, WR (<b>D</b>).</p>
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<p>Internode length (<b>A</b>) and plant height (<b>B</b>) of different colored rice varieties at various growth stages. Tillering stage (T1), jointing stage (T2), heading stage (T3), and full heading stage (T4). LG (CK): light green rice, DP: purple leaf rice, BP: black-purple leaf rice, WR: white rice. Different lowercase letters indicate significant differences between treatments by LSD test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Leaf area of inverted second leaf (<b>A</b>) and inverted third leaf (<b>B</b>) of colored rice at different growth stages. Tillering stage (T1), jointing stage (T2), heading stage (T3), and full heading stage (T4). LG (CK): light green rice, DP: purple leaf rice, BP: black-purple leaf rice, WR: white rice. Different lowercase letters indicate significant differences between treatments by LSD test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Leaf fresh weight (<b>A</b>), leaf dry weight (<b>B</b>), stem fresh weight (<b>C</b>), stem dry weight (<b>D</b>), spike fresh weight (<b>E</b>), and spike dry weight (<b>F</b>) of different colored rice varieties in different growth stages. Tillering stage (T1), jointing stage (T2), heading stage (T3), and full heading stage (T4). LG (CK): light green rice, DP: purple leaf rice, BP: black-purple leaf rice, WR: white rice. Different lowercase letters indicate significant differences between treatments by LSD test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Changes in chlorophyll a (<b>A</b>), chlorophyll b (<b>B</b>), total chlorophyll content (<b>C</b>), and carotenoid content (<b>D</b>) in different growth stages of rice varieties with different colors. Tillering stage (T1), jointing stage (T2), heading stage (T3), and full heading stage (T4). LG (CK): light green rice, DP: purple leaf rice, BP: black-purple leaf rice, WR: white rice. Different lowercase letters indicate significant differences between treatments by LSD test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>The net photosynthetic rate (Pn) (<b>A</b>), stomatal conductance (Gs) (<b>B</b>), intercellular carbon dioxide concentration (Ci) (<b>C</b>), and transpiration rate (Tr) (<b>D</b>). LG (CK): light green rice, DP: purple leaf rice, BP: black-purple leaf rice, WR: white rice. Different lowercase letters indicate significant differences between treatments by LSD test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Activity of SOD (<b>A</b>), APX (<b>B</b>), CAT (<b>C</b>), and POD (<b>D</b>) in different colored rice varieties. Tillering stage (T1), jointing stage (T2), heading stage (T3), and full heading stage (T4). LG (CK): light green rice, DP: purple leaf rice, BP: black-purple leaf rice, WR: white rice. Different lowercase letters indicate significant differences between treatments by LSD test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Antioxidant enzyme activity, photosynthetic pigment content, and yield correlation. CAT, CAT activity; APX, APX activity; POD, POD activity; MDA, MDA activity; total chlorophyll, total chlorophyll content; carotenoids, carotenoid content; net photosynthetic rate (Pn); stomatal conductance (Gs); intercellular carbon dioxide concentration (Ci); and transpiration rate (Tr); yield, seed yield. Red marks represent a significant correlation (<span class="html-italic">p</span> &lt; 0.05), while blue marks represent no correlation.</p>
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15 pages, 5680 KiB  
Article
Enhanced Eicosapentaenoic Acid Production via Synthetic Biological Strategy in Nannochloropsis oceanica
by Congcong Miao, Mingting Du, Hongchao Du, Tao Xu, Shan Wu, Xingwei Huang, Xitao Chen, Suxiang Lei and Yi Xin
Mar. Drugs 2024, 22(12), 570; https://doi.org/10.3390/md22120570 - 19 Dec 2024
Abstract
The rational dietary ratio of docosahexaenoic acid (DHA) to eicosapentaenoic acid (EPA) can exert neurotrophic and cardiotrophic effects on the human body. The marine microalga Nannochloropsis oceanica produces EPA yet no DHA, and thus, it is considered an ideal EPA-only model to pursue [...] Read more.
The rational dietary ratio of docosahexaenoic acid (DHA) to eicosapentaenoic acid (EPA) can exert neurotrophic and cardiotrophic effects on the human body. The marine microalga Nannochloropsis oceanica produces EPA yet no DHA, and thus, it is considered an ideal EPA-only model to pursue a rational DHA/EPA ratio. In this study, synthetic biological strategy was applied to improve EPA production in N. oceanica. Firstly, to identify promoters and terminators, fifteen genes from N. oceanica were isolated using a transcriptomic approach. Compared to α-tubulin, NO08G03500, NO03G03480 and NO22G01450 exhibited 1.2~1.3-fold increases in transcription levels. Secondly, to identify EPA-synthesizing modules, putative desaturases (NoFADs) and elongases (NoFAEs) were overexpressed by the NO08G03500 and NO03G03480 promoters/terminators in N. oceanica. Compared to the wild type (WT), NoFAD1770 and NoFAE0510 overexpression resulted in 47.7% and 40.6% increases in EPA yields, respectively. Thirdly, to store EPA in triacylglycerol (TAG), NoDGAT2K was overexpressed using the NO22G01450 promoter/terminator, along with NoFAD1770NoFAE0510 stacking, forming transgenic line XS521. Compared to WT, TAG-EPA content increased by 154.8% in XS521. Finally, to inhibit TAG-EPA degradation, a TAG lipase-encoding gene NoTGL1990 was knocked out in XS521, leading to a 49.2–65.3% increase in TAG-EPA content. Our work expands upon EPA-enhancing approaches through synthetic biology in microalgae and potentially crops. Full article
(This article belongs to the Special Issue Synthetic Biology in Marine Microalgae)
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<p>Mechanistic model of EPA metabolism in <span class="html-italic">Nannochloropsis</span>. Not all intermediates or reactions are displayed. Arrows indicate catalytic steps in the pathway. DGAT, diacylglycerol acyltransferase; FAS, fatty acid synthase; FAE, fatty acid elongase; TAG: triacylglycerol; TGL, TAG-lipase. The solid arrows indicate reactions occurring within the same subcellular organelle, while the dotted arrows represent reactions and transport events between different subcellular organelles. The overexpression and knockout enzymes in this study are marked by red and blue letters, respectively.</p>
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<p>Identification of robust constitutive promoters in <span class="html-italic">N. oceanica</span> IMET1. (<b>A</b>) Transcriptomic response of <span class="html-italic">N. oceanica</span> under normal (N+ NL), nitrogen-starvation (N− NL), and high light (N+ HL) conditions. Fold change was calculated as log<sub>2</sub>(FPKM(Gx)/FPKM (<span class="html-italic">α-tubulin</span>, NO12G02410)) (FPKM = the normalized abundance of transcript; Gx = gene candidates). (<b>B</b>) RT-qPCR validation of transcript level for top 15 genes in (<b>A</b>). Gene ID was isolated from NanDeSyn (<a href="https://nandesyn.single-cell.cn" target="_blank">https://nandesyn.single-cell.cn</a>, accessed on 22 September 2024). Values shown as mean ± SD (in triplicates). * significant change (<span class="html-italic">p</span> &lt; 0.01) versus α-tubulin.</p>
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<p>Cladograms of selected protein sequences of desaturases (<b>A</b>) and elongases (<b>B</b>) from higher plants, fungi, microalgae, and animals. Neighbor joining (NJ) was used for tree construction. Cladogram was plotted based on actual branch length. GenBank accession numbers are provided in brackets. Numbers beside the branch: bootstrap value for NJ. -, &lt;50. Red arrow, NoFADs (<b>A</b>) or NoFAEs (<b>B</b>).</p>
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<p>Homologous overexpression of desaturases and elongases in <span class="html-italic">N. oceanica</span> IMET1. (<b>A</b>) Genetic manipulation lines with overexpression of desaturases (NoFADs) or elongases (NoFAEs). (<b>B</b>) Transcript level of <span class="html-italic">NoFAD0120</span>, <span class="html-italic">NoFAD1770</span>, <span class="html-italic">NoFAE0510</span>, and <span class="html-italic">NoFAE0440</span> in <span class="html-italic">N. oceanica</span> wild-type and overexpression lines. (<b>C</b>,<b>D</b>) Lipid content (<b>C</b>) and EPA yield (<b>D</b>) of the <span class="html-italic">NoFAD</span> or <span class="html-italic">NoFAE</span> overexpression lines in <span class="html-italic">N. oceanica</span>. <span class="html-italic">NoFAD0120</span>, NO06G00120; <span class="html-italic">NoFAD1770</span>, NO26G01770; <span class="html-italic">NoFAE0510</span>, NO29G00510; <span class="html-italic">NoFAE0440</span>, NO16G00440; P1/T1, promoter/terminator from NO08G03500; P2/T2, promoter/terminator from NO03G03480. Gene ID was isolated from NanDeSyn (<a href="https://nandesyn.single-cell.cn" target="_blank">https://nandesyn.single-cell.cn</a>, accessed on 22 September 2024). Values shown as mean ± SD (in triplicates). *, significant change (<span class="html-italic">p</span> &lt; 0.01) versus wild type.</p>
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<p>Gene stacking for EPA production in <span class="html-italic">N. oceanica</span> IMET1. (<b>A</b>) Gene-stacking lines harboring <span class="html-italic">NoFAD1770</span>-, <span class="html-italic">NoFAE0510</span>-, and/or <span class="html-italic">NoDGAT2K</span>-overexpression cassettes. (<b>B</b>) Transcript level of <span class="html-italic">NoFAD1770</span>, <span class="html-italic">NoFAE0510</span>, and <span class="html-italic">NoDGAT2K</span> in <span class="html-italic">N. oceanica</span> wild-type and gene-stacking lines, as measured by RT-qPCR. Transcription level of the above genes was normalized to that of Actin, the internal control. (<b>C</b>–<b>F</b>) Lipid content (<b>C</b>), EPA yield (<b>D</b>), TAG content (<b>E</b>), and TAG-associated EPA content (<b>F</b>) of the gene-stacking lines and wild type. <span class="html-italic">NoFAD1770</span>, NO26G01770; <span class="html-italic">NoFAE0510</span>, NO29G00510; <span class="html-italic">NoDGAT2K</span>, NO05G02840; P1/T1, promoter/terminator from NO08G03500; P2/T2, promoter/terminator from NO03G03480; P3/T3, promoter/terminator from NO22G01450. Gene ID was isolated from NanDeSyn (<a href="https://nandesyn.single-cell.cn" target="_blank">https://nandesyn.single-cell.cn</a>, accessed on 22 September 2024). Values shown as mean ± SD (in triplicates). *, significant change (<span class="html-italic">p</span> &lt; 0.01) versus wild type.</p>
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<p>TAG-lipase knockout for EPA storage in TAG of <span class="html-italic">N. oceanica</span> IMET1. (<b>A</b>) Genome sequences of the editing sites in the <span class="html-italic">NoTGL1990</span>-knockout lines and wild type (WT). Sequences of the generated <span class="html-italic">NoTGL1990</span>-CRISPR/Cas9 lines confirmed the mutants as knockout lines with ‘ATCC’ deleted in XS022-1, ‘TATCC’ deleted in XS022-2, and two cytosines inserted in XS022-3. (<b>B</b>) Growth kinetics of the <span class="html-italic">NoTGL1990</span>-knockout lines and WT. (<b>C</b>–<b>F</b>) Comparison of the lipid content (<b>C</b>), EPA yield (<b>D</b>), TAG content (<b>E</b>), and TAG-associated EPA content (<b>F</b>) between <span class="html-italic">NoTGL1990</span>-knockout lines and WT. Values shown as mean ± SD (in triplicates). *, significant change (<span class="html-italic">p</span> &lt; 0.01) versus wild type.</p>
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22 pages, 5555 KiB  
Article
Autonomous Driving Decision-Making Method Based on Spatial-Temporal Fusion Trajectory Prediction
by Yutao Luo, Aining Sun and Jiawei Hong
Appl. Sci. 2024, 14(24), 11913; https://doi.org/10.3390/app142411913 - 19 Dec 2024
Abstract
Due to the challenge that the behavior of traffic participants in the driving environment is highly stochastic and uncertain, it is difficult for self-driving vehicles to make accurate decisions based only on the current environmental state. In this paper, we propose a driving [...] Read more.
Due to the challenge that the behavior of traffic participants in the driving environment is highly stochastic and uncertain, it is difficult for self-driving vehicles to make accurate decisions based only on the current environmental state. In this paper, we propose a driving strategy learning method based on spatial-temporal feature prediction. Firstly, the spatial interaction between vehicles is implicitly modeled using a graph convolutional neural network and multi-head attention mechanism, and the gated loop unit is embedded to capture the sequential temporal relationship to establish a prediction model incorporating spatial-temporal features. Then, a reinforcement learning-based driving strategy method is constructed using some of the predictive features of the ego-vehicle and surrounding vehicles as predictive state inputs. Finally, based on the real dataset and CARLA simulation platform, the prediction ability of the prediction model and the effectiveness of the prediction-based decision-making model are verified. The simulation results prove that the prediction algorithm can achieve the minimum error compared with the baseline trajectory prediction algorithm, and effectively improves the accuracy and reliability of the autopilot decision-making in various dynamic scenarios. Full article
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<p>Overall structure.</p>
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<p>Encoder-decoder network.</p>
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<p>Flowchart of the SAC algorithm.</p>
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<p>Comparison curve of SAC algorithm training rewards under different prediction models.</p>
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<p>Comparison curve of this paper’s algorithm with other reinforcement learning training rewards.</p>
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<p>Three simulation test scenarios built in CARLA.</p>
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<p>Test reward change curves.</p>
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<p>Test time change curves.</p>
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<p>Comparison of the path offsets.</p>
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<p>Comparison of the ego-vehicle speeds.</p>
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<p>Test reward change curve.</p>
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<p>Test time change curve.</p>
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<p>Comparison of traveling tracks.</p>
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<p>Comparison of the ego-vehicle speeds.</p>
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<p>Comparison of actual and predicted trajectories of obstacle vehicle A.</p>
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<p>Comparison of actual and predicted trajectories of obstacle vehicle B.</p>
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