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16 pages, 2571 KiB  
Article
Sodium Butyrate: A Multifaceted Modulator in Colorectal Cancer Therapy
by Alexandra Laura Mederle, Alexandra Semenescu, George Andrei Drăghici, Cristina Adriana Dehelean, Nicolae-Valentin Vlăduț and Dragoş Vasile Nica
Medicina 2025, 61(1), 136; https://doi.org/10.3390/medicina61010136 - 15 Jan 2025
Abstract
Background and Objectives: Sodium butyrate (NaB) is a potent modulator of cancer-related gene networks. However, its precise mechanisms of action and effects at elevated doses remain insufficiently explored. This study investigated the impact of NaB at physiologically relevant doses on key cellular [...] Read more.
Background and Objectives: Sodium butyrate (NaB) is a potent modulator of cancer-related gene networks. However, its precise mechanisms of action and effects at elevated doses remain insufficiently explored. This study investigated the impact of NaB at physiologically relevant doses on key cellular metrics (viability, confluence, cell number, morphology, nuclear integrity) and a comprehensive set of apoptosis and proliferation regulators (including underexplored genes) in colorectal cancer (CRC) cells. Materials and Methods: Human HCT-116 cells were treated with increasing NaB concentrations (0–20 mM). Cell viability, confluence, number, morphology, and nuclear integrity were assessed using MTT and imaging assays. RT-PCR was used to determine changes in the expression of critical pro-apoptotic players (BAX, CASP3, PUMA, TP53), anti-apoptotic facilitators (BCL-2, MCL-1), cell division regulators (PCNA, Ki-67, CDKN1), and inflammation genes (NF-κB). Results: This study provides the first exploration of MCL-1 and PCNA modulation by NaB in the context of CRC and HCT-116 cells, offering significant translational insights. All treatments reduced cell viability, confluence, and number in a dose-dependent manner (p < 0.0001). Gene expression revealed dose-related increases in most pro-apoptotic markers (BAX, CASP3, PUMA; p < 0.001), and decreases for the other genes (p < 0.001). BAX emerged as the most responsive gene to NaB, while TP53 showed minimal sensitivity, supporting NaB’s effectiveness in p53-compromised phenotypes. Nuclear condensation and fragmentation at higher NaB doses confirmed apoptotic induction. Conclusions: NaB can modulate critical apoptotic and cell cycle genes, disrupt tumor cell proliferation, and overcome resistance mechanisms associated with anti-apoptotic regulators such as MCL-1. By targeting both short-term and long-term anti-apoptotic defenses, NaB shows promise as a preventive and therapeutic agent in CRC, particularly in high-risk phenotypes with compromised p53 functionality. These findings support its potential for integration into combination therapies or dietary interventions aimed at enhancing colonic butyrate levels. Full article
(This article belongs to the Special Issue Intestinal Microbiome in Human Health and Disease—Recent Updates)
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Figure 1

Figure 1
<p>(<b>a</b>) The viability of HCT-116 cells at 24 h post-treatment. The data were obtained via the MTT assay and are given as average percentage (normalized to control cells) with one standard deviation. Marked bars (*) indicate significant differences compared to controls (Dunnet’s tests, ****—<span class="html-italic">p</span> &lt; 0.0001, ***—<span class="html-italic">p</span> &lt; 0.001, **—<span class="html-italic">p</span> &lt; 0.01, *—<span class="html-italic">p</span> &lt; 0.05). (<b>b</b>) The corresponding dose–response curve fitted with the 4PL regression model. The sigmoidal curve indicates a gradual viability reduction, with an indicative IC<sub>50</sub> of ≈26.85 mM. Error bars represent standard deviations, and the fitted curve reflects the overall trend.</p>
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<p>The measured values for (<b>a</b>) the cell confluence area and (<b>b</b>) the cell number at 24 h post-treatment. The data are given as average percentage (normalized to control cells) with one standard deviation. Marked bars (*) indicate significant differences compared to controls (Dunnet’s tests, ****—<span class="html-italic">p</span> &lt; 0.0001, ***—<span class="html-italic">p</span> &lt; 0.001, **—<span class="html-italic">p</span> &lt; 0.01, *—<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 3
<p>The morphological aspect of the colon cancer cell line HCT-116 after 24 h of treatment with NaB was observed under 20× magnification. Control,cells exhibit (<b>top left corner</b>) normal morphology, with intact cell membranes and uniform density across the field of view. At 5 mM (<b>top right corner</b>), mild alterations and reduced density were noted. At 10 mM (<b>bottom left corner</b>), cell shrinkage and apoptotic bodies became evident. Higher doses of 15 mM (<b>middle bottom</b>) and 20 mM (<b>bottom right corner</b>) led to severe cell fragmentation, condensed nuclei, and significant density reduction, indicating apoptosis. Scale bars represent 200 µm.</p>
Full article ">Figure 4
<p>Morphological changes in nuclei after 24 h of NaB treatment were observed under 20× magnification. Control nuclei were intact (<b>top left corner</b>), while 10% of cells at 5 mM (<b>top right corner</b>) showed mild condensation. At 10 mM (<b>bottom left corner</b>), 25% displayed condensation and fragmentation, increasing to about 50% at 15 mM and 70% at 20 mM ((<b>middle bottom</b>) and (<b>bottom right corner</b>), respectively), where extensive nuclear disintegration was observed. Yellow arrows indicate apoptotic features; scale bars represent 100 µm.</p>
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22 pages, 7211 KiB  
Article
Single Dose of Attenuated Vaccinia Viruses Expressing H5 Hemagglutinin Affords Rapid and Long-Term Protection Against Lethal Infection with Highly Pathogenic Avian Influenza A H5N1 Virus in Mice and Monkeys
by Fumihiko Yasui, Keisuke Munekata, Tomoko Fujiyuki, Takeshi Kuraishi, Kenzaburo Yamaji, Tomoko Honda, Sumiko Gomi, Misako Yoneda, Takahiro Sanada, Koji Ishii, Yoshihiro Sakoda, Hiroshi Kida, Shosaku Hattori, Chieko Kai and Michinori Kohara
Vaccines 2025, 13(1), 74; https://doi.org/10.3390/vaccines13010074 - 15 Jan 2025
Viewed by 149
Abstract
Background/Objectives: In preparation for a potential pandemic caused by the H5N1 highly pathogenic avian influenza (HPAI) virus, pre-pandemic vaccines against several viral clades have been developed and stocked worldwide. Although these vaccines are well tolerated, their immunogenicity and cross-reactivity with viruses of different [...] Read more.
Background/Objectives: In preparation for a potential pandemic caused by the H5N1 highly pathogenic avian influenza (HPAI) virus, pre-pandemic vaccines against several viral clades have been developed and stocked worldwide. Although these vaccines are well tolerated, their immunogenicity and cross-reactivity with viruses of different clades can be improved. Methods: To address this aspect, we generated recombinant influenza vaccines against H5-subtype viruses using two different strains of highly attenuated vaccinia virus (VACV) vectors. Results: rLC16m8-mcl2.2 hemagglutinin (HA) and rLC16m8-mcl2.3.4 HA consisted of a recombinant LC16m8 vector encoding the HA protein from clade 2.2 or clade 2.3.4 viruses (respectively); rDIs-mcl2.2 HA consisted of a recombinant DIs vector encoding the HA protein from clade 2.2. A single dose of rLC16m8-mcl2.2 HA showed rapid (1 week after vaccination) and long-term protection (20 months post-vaccination) in mice against the HPAI H5N1 virus. Moreover, cynomolgus macaques immunized with rLC16m8-mcl2.2 HA exhibited long-term protection when challenged with a heterologous clade of the HPAI H5N1 virus. Although the DIs strain is unable to grow in most mammalian cells, rDIs-mcl2.2 HA also showed rapid and long-lasting effects against HPAI H5N1 virus infection. Notably, the protective efficacy of rDIs-mcl2.2 HA was comparable to that of rLC16m8-mcl2.2 HA. Furthermore, these vaccines protected animals previously immunized with VACVs from a lethal challenge with the HPAI H5N1 virus. Conclusions: These results suggest that both rLC16m8-mcl2.2 HA and rDIs-mcl2.2 HA are effective in preventing HPAI H5N1 virus infection, and rDIs-mcl2.2 HA is a promising vaccine candidate against H5 HA-subtype viruses. Full article
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Figure 1

Figure 1
<p>Protective efficacy of recombinant vaccinia virus LC16m8 strain (rLC16m8) expressing H5 hemagglutinin (HA) protein against lethal infection with highly pathogenic avian influenza (HPAI) H5N1 virus in mice. (<b>A</b>–<b>D</b>) Vaccination and infection studies in naïve BALB/c mice. (<b>A</b>) Experimental schedule of vaccination and H5N1 influenza virus infection in mice. Eight-week-old female BALB/c mice were inoculated intradermally with 1 × 10<sup>7</sup> PFU of rLC16m8-mcl2.2 HA, rLC16m8-mcl2.3.4 HA, or rLC16m8-empty; 5 weeks after vaccination, animals were infected intranasally with 1 × 10<sup>4</sup> PFU of H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1). rLC16m8-mcl2.2 HA, rLC16m8 encoding the H5 HA protein (clade 2.2, A/Qinghai/1A/05); rLC16m8-mcl2.3.4 HA, rLC16m8 encoding the H5 HA protein (clade 2.3.4, A/Anhui/1/05); rCL16m8-empty, rCL16m8 harboring only the ATI/p7.5 hybrid promoter sequence. (<b>B</b>) Body weight was monitored daily after the H5N1 virus infection. Values are shown as mean ± SD. (<b>C</b>) Survival rate was observed until 9 days post-infection (dpi). (<b>D</b>) Pulmonary virus titer was determined in four mice per group at each time point after H5N1 influenza virus infection. Values are shown as geometric mean ± geometric SD. <span class="html-italic">p</span> values are calculated using two-tailed non-paired one-way ANOVA followed by Turkey’s test. (<b>E</b>,<b>F</b>) Vaccination and infection studies in BALB/c mice sensitized with vaccinia virus (VACV). Eight-week-old female BALB/c mice were inoculated intradermally with either 1×10<sup>7</sup> PFU of rLC16m8-empty or culture medium (vehicle). Four weeks after sensitization with VACV, these mice were further inoculated with 1 × 10<sup>7</sup> PFU of either rLC16m8-mcl2.2 HA or rLC16m8-empty. Four weeks after vaccination with rLC16m8-based viruses, animals were infected with 1 × 10<sup>4</sup> PFU of H5N1 A/whooper swan/Hokkaido/1/2008. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001. (<b>E</b>) Body weight was monitored daily after H5N1 virus infection. Values are shown as mean ± SD. (<b>F</b>) Survival rate was observed until twelve dpi. Survival rates were compared in panels (<b>C</b>,<b>F</b>) using the Gehan-Breslow-Wilcoxon method.</p>
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<p>Rapid protective effects induced by rLC16m8-H5 HA against lethal infection with the HPAI H5N1 virus in mice. (<b>A</b>) Experimental schedule of vaccination and H5N1 influenza virus infection in BALB/c mice. Female BALB/c mice were inoculated intradermally with 1 × 10<sup>7</sup> PFUs of rLC16m8-mcl2.2 HA, rLC16m8-mcl2.3.4 HA, or rLC16m8-empty (<b>B</b>) 2 weeks, (<b>C</b>) 1 week, or (<b>D</b>) 3 days before intranasal infection with 1 × 10<sup>4</sup> PFUs of H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1). (<b>B</b>) BALB/c mice were infected with the H5N1 HPAI virus 2 weeks after vaccination with rLC16m8-H5 HA. After infection with the virus, body weight was monitored daily (left panel), and the survival rate was recorded until 9 days post-infection (dpi) (right panel). (<b>C</b>) One week after vaccination, the rapid protective efficacy of rLC16m8-H5 HA against H5N1 HPAI virus infection was evaluated by monitoring body weight daily (left panel) and recording survival until 9 dpi (right panel). (<b>D</b>) Three days after vaccination, the rapid protective efficacy of rLC16m8-H5 HA against H5N1 HPAI virus infection was evaluated by monitoring body weight daily (left panel) and recording survival until 9 dpi (right panel). Survival rates are compared in panels (<b>B</b>–<b>D</b>) using the Gehan–Breslow–Wilcoxon method. NS: not significant. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Long-term protection by rLC16m8-H5 HA against lethal infection with the HPAI H5N1 virus in mice. Female BALB/c mice were inoculated intradermally with 1 × 10<sup>7</sup> PFUs of rLC16m8-mcl2.2 HA or rLC16m8-empty [<span class="html-italic">n</span> = 3–5 in each group except for <span class="html-italic">n</span> = 2 in rLC16m8-mcl2.2 HA in (<b>E</b>)]. (<b>A</b>) The time course of production of immunoglobulin G (IgG) specific to H5 HA (clade 2.2) after vaccination was evaluated by an ELISA. (<b>B</b>) The HI titer of antisera from mice immunized with rLC16m8-mlc.2.2 HA (<span class="html-italic">n</span> = 4) or rLC16m8-empty (<span class="html-italic">n</span> = 4) 1 and 6 months after immunization. HI titers were determined against HPAI H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1; Hok/1/08), A/whooper swan/Mongolia/3/2005 (clade 2.2; Mon/3/05), and A/Vietnam/UT3040/2004 (clade 1; UT3040/04) using 0.75% guinea pig erythrocytes. (<b>C</b>–<b>E</b>) Vaccinated mice were challenged with 166 × 50% mouse lethal dose (MLD<sub>50</sub>) of HPAI H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1) 12 (<b>C</b>) or 18 (<b>D</b>) months after vaccination. (<b>E</b>) Vaccinated mice were challenged with 150 × MLD<sub>50</sub> of H5N1 A/Vietnam/UT3040/2004 (clade 1) 20 months after vaccination. Left panels show body weight changes when monitored daily after the H5N1 virus challenge. Right panels show the survival rate when assessed until 9 days post-infection. ND: not determined (rLC16m8-mcl2.2 HA, <span class="html-italic">n</span> = 2; rLC16m8-empty, <span class="html-italic">n</span> = 3). * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
Full article ">Figure 4
<p>Long-term protection by rLC16m8-H5 HA against lethal infection with the HPAI H5N1 virus in cynomolgus macaques. Female cynomolgus macaques were inoculated intradermally with 1 × 10<sup>7</sup> PFUs of rLC16m8-mcl2.2 HA (<span class="html-italic">n</span> = 3) or rLC16m8-empty (<span class="html-italic">n</span> = 2) on their upper arms. Twelve months after vaccination, HPAI H5N1 virus A/whooper swan/Hokkaido/1/2008 was inoculated into the nostrils, oral cavity, and trachea of each macaque. (<b>A</b>) The time course of production of IgG specific to the H5 HA protein (clade 2.2) after vaccination was evaluated using an ELISA. (<b>B</b>) The mean value of the body temperature of individual macaques from 8 p.m. to 8 a.m. every night was calculated from the temperature recorded every 5 min. Body temperature changes of individual macaques on each day after virus infection were compared with mean temperature changes from 8 p.m. on day 1 to 8 a.m. on day 0 before virus infection. (<b>C</b>) Cumulative temperature increase, calculated as the area under the curve (AUC) from the data recorded 3 days post-infection (dpi) to 7 dpi in (<b>B</b>). (<b>D</b>) Temporal changes in viral titers in nasal (upper panel), oral (middle panel), and tracheal (lower panel) swab samples were determined by a 50% tissue culture infectious dose (TCID<sub>50</sub>) assay using Madin–Darby canine kidney (MDCK) cells. The dpis are indicated in navy (1 dpi), red (3 dpi), green (5 dpi), and yellow (7 dpi). The lower limit of detection (1.7 log units) is indicated by a horizontal dashed line.</p>
Full article ">Figure 5
<p>Histopathology and viral load in the lungs of cynomolgus macaques after HPAI H5N1 virus infection. (<b>A</b>) Representative lung sections (hematoxylin and eosin staining; section thickness 4 μm) at 7 days post-infection (dpi); original magnification was 100×. Bar, 200 μm. The number indicates animal ID. (<b>B</b>) Histopathological scores were obtained for each of the 15 defined regions of the lung lobe of each animal (RU, right upper; RM, right middle; RL, right lower; LU, left upper; LM, left middle; LL, left lower) 7 dpi with rLC16m8-empty or rLC16m8-mcl2.2 HA. Red horizontal bars indicate the mean pathological score in each group. <span class="html-italic">p</span> values were calculated using the Mann–Whitney U test. (<b>C</b>) Viral load in all lung lobes was determined by reverse transcription–quantitative PCR. The central horizontal value represents the geometric mean, and the whiskers indicate the geometric SD. <span class="html-italic">p</span> values were calculated by two-tailed non-paired Student’s <span class="html-italic">t</span>-tests. * <span class="html-italic">p</span> &lt; 0.05.</p>
Full article ">Figure 6
<p>Rapid and long-term protection by a single dose of replication-deficient rDIs-mcl2.2 HA against lethal infection with H5N1 HPAI virus in mice. Female BALB/c mice were inoculated intradermally with 1 × 10<sup>7</sup> PFU of rDIs-mcl2.2 HA or DIs. (<b>A</b>) Vaccinated mice (rDIs-mcl2.2 HA, <span class="html-italic">n</span> = 4; DIs, <span class="html-italic">n</span> = 4) were infected with 1 × 10<sup>4</sup> PFUs of H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1) 5 weeks after vaccination. Left: body weight was monitored daily after H5N1 virus infection. Right: survival rate was observed until 12 days post-infection (dpi). (<b>B</b>,<b>C</b>) The speed of protection by rDIs-mcl2.2 HA against the HPAI H5N1 virus was investigated. Two weeks (<b>B</b>) or one week (<b>C</b>) after vaccination, mice were infected intranasally with 166 × MLD<sub>50</sub> of A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1) and then monitored daily for changes in their body weight (left panel) and survival rate until 12 dpi (right panel). (<b>D</b>,<b>E</b>) Long-term immunity by a single dose of rDIs-mcl2.2 HA was investigated. (<b>D</b>) The time course of production of IgG specific to the HA protein (clade 2.2) was measured by an ELISA. One thousand-fold diluted murine sera were used. (<b>E</b>) The HI titer of antisera from mice immunized with rDIs-mlc.2.2 HA (<span class="html-italic">n</span> = 4) or DIs (<span class="html-italic">n</span> = 4) 1 and 6 months after immunization. HI titers were determined against HPAI H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1; Hok/1/08), A/whooper swan/Mongolia/3/2005 (clade 2.2; Mon/3/05), and A/Vietnam/UT3040/2004 (clade 1; UT3040/04) using 0.75% guinea pig erythrocytes. (<b>F</b>) Vaccinated mice were infected intranasally with 1 × 10<sup>4</sup> PFUs of H5N1 A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1) after 20 months. Survival rates are compared in data shown in panels (<b>A</b>–<b>C</b>,<b>F</b>) using the Gehan–Breslow–Wilcoxon method. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Protective efficacy of rDIs-mcl2.2 HA against the HPAI H5N1 virus in VACV-sensitized mice. (<b>A</b>) Experimental schedule. To investigate the protective efficacy of a single dose of rDIs-mcl2.2 HA against lethal infection with the HPAI H5N1 virus in VACV-sensitized mice, female BALB/c mice were sensitized intradermally with 1 × 10<sup>7</sup> PFUs of the VACV LC16m8 strain and then immunized intradermally with rDIs-mcl2.2 HA (1 × 10<sup>7</sup> PFUs, 3 × 10<sup>7</sup> PFUs, or 1 × 10<sup>8</sup> PFUs) 22 weeks after VACV sensitization (<b>D</b>). Age-matched naïve mice were used as controls (<b>C</b>). (<b>B</b>) A total of 21 weeks after VACV sensitization, the neutralization titer (50% neutralization) against LC16m8 was measured. Dashed lines denote the limits of detection. (<b>C</b>) Naïve mice were inoculated with rDIs-mcl2.2 HA and then infected intranasally with 166 × MLD<sub>50</sub> of A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1) 5 weeks after vaccination. Body weight (left panel) and survival rate (right panel) were monitored daily. (<b>D</b>) VACV-sensitized mice were inoculated with rDIs-mcl2.2 HA and then infected intranasally with 166 × MLD<sub>50</sub> of A/whooper swan/Hokkaido/1/2008 (clade 2.3.2.1) 5 weeks after vaccination. Body weight (left panel) and survival rate (right panel) were monitored daily. Survival rates are compared in panels (<b>C</b>,<b>D</b>) using the Gehan–Breslow–Wilcoxon method. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Th1/Th2 immune reponse to rVACV-mcl2.2 HA vaccine. (<b>A</b>) IgG1 (left) and IgG2a (right) responses against H5 HA clade 2.2 in mice vaccinated with rLC16m8-mcl2.2 HA (<span class="html-italic">n</span> = 4; red) or rDIs-mcl2.2 HA (<span class="html-italic">n</span> = 4) 1 and 6 months after immunization. Antisera from rLC16m8-empty-immunized (<span class="html-italic">n</span> = 4; white) and DIs-immunized (<span class="html-italic">n</span> = 4) mice were used as negative controls. The dashed line indicates a minimal dilution rate (1:1000) of antisera used in the ELISA. The endpoint titers of negative controls were defined as 500. (<b>B</b>) Th1/Th2 skewing responses in mice vaccinated with rLC16m8-mcl2.2 HA (<span class="html-italic">n</span> = 4) or rDIs-mcl2.2 HA (<span class="html-italic">n</span> = 4) 1 and 6 months after immunization. The IgG2a/IgG1 ratio was calculated using the respective endpoint titer values. (<b>C</b>) IFN-γ (left) or IL-4 (right) levels were measured via an ELISpot assay using the splenocytes of mice immunized with rDIs-mcl2.2 HA or DIs 1 month after immunization. Values are shown as the mean ± SD. Statistical analysis was performed using two-tailed one-way ANOVA with post hoc Tukey’s multiple comparison test.</p>
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17 pages, 10010 KiB  
Article
Loss of Myostatin Affects m6A Modification but Not Semen Characteristics in Bull Spermatozoa
by Chao Hai, Linfeng Wang, Song Wang, Anqi Di, Lishuang Song, Xuefei Liu, Chunling Bai, Guanghua Su, Lei Yang and Guangpeng Li
Int. J. Mol. Sci. 2025, 26(2), 591; https://doi.org/10.3390/ijms26020591 - 12 Jan 2025
Viewed by 320
Abstract
N6-methyladenosine (m6A) modification is a key methylation modification involved in reproductive processes. Myostatin gene editing (MT) in cattle is known to enhance muscle mass and productivity. However, the changes in m6A modification in MT bull sperm remain poorly understood. In the MT and [...] Read more.
N6-methyladenosine (m6A) modification is a key methylation modification involved in reproductive processes. Myostatin gene editing (MT) in cattle is known to enhance muscle mass and productivity. However, the changes in m6A modification in MT bull sperm remain poorly understood. In the MT and wild-type (WT) groups, we identified 25,542 and 22,253 m6A peaks, respectively, mainly concentrated in the coding sequence (CDS) and 3′ untranslated region (UTR) of genes. The MT group showed an increase in gene transcription, but there was no significant difference in the overall m6A peaks pattern. There was also no significant difference in m6A motif and chromosome distribution between MT and WT groups. Most genes had less m6A modification sites. A total of 1120 m6A peaks were significantly different, corresponding to 1053 differentially m6A-methylated genes (DMMGs). These DMMGs are mainly associated with G protein-coupled receptor signaling pathways and the overall composition of the cell membrane. Furthermore, an MCL clustering analysis of 111 differentially m6A-methylated and expressed genes identified seven key genes (RHOA, DAAM1, EXOC4, GNA12, PRICKLE1, SCN1A, and STXBP5L), with the cytoskeleton and migration-related gene, RHOA, being the most important gene located at the center of the gene network. However, the analysis of sperm morphology and motility indicated no significant changes in semen volume, sperm count, sperm viability, plasma membrane integrity, acrosome membrane integrity, or mitochondrial membrane integrity. This study provides a map of m6A methylation in spermatozoa from MT and WT bulls, identifies key differential m6A genes that are affected by the myostatin gene but do not affect sperm morphology and viability in MT bulls, and provides a theoretical basis for the breeding quality of MT bulls. Full article
(This article belongs to the Section Molecular Biology)
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Figure 1

Figure 1
<p>Overall distribution of m6A methylation. (<b>A</b>) Distribution of gene m6A peaks. (<b>B</b>) The enrichment of reads near the TSS and TES at the transcriptome initiation site of the gene. (<b>C</b>) Pie charts showing the percentage of m6A peaks in different groups.</p>
Full article ">Figure 2
<p>Distribution of m6A methylation across different groups. (<b>A</b>) Motifs enriched from m6A peaks were identified among the MT and WT groups. (<b>B</b>) Metagene plots displaying the regions of m6A peaks identified across the transcripts in the MT and WT groups. (<b>C</b>) Chromosomal distribution of all DMMSs within mRNAs. (<b>D</b>) Relative occupancy of DMMSs on each chromosome. (<b>E</b>) Number of m6A peaks per gene.</p>
Full article ">Figure 3
<p>GO and KEGG analyses of differentially methylated m6A peaks. (<b>A</b>) Venn diagram of common m6A peaks within mRNAs in the MT and WT groups. (<b>B</b>) Volcano plot of significant m6A peaks. (<b>C</b>,<b>D</b>) GO and KEGG enrichment analysis of DMMGs specific to the MT group. (<b>E</b>,<b>F</b>) GO and KEGG enrichment analyses of DMMGs specific to the MT group. (<b>G</b>,<b>H</b>) GO and KEGG analyses of DMMGs common to the MT and WT groups.</p>
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<p>Association analysis between transcriptome-seq data and m6A-seq data. (<b>A</b>) Four-quadrant diagram of DMGs. Hyper-up represents upregulation of the m6A peak and upregulation of mRNA expression. Hyper-down regulation represents upregulation of the m6A peak and downregulation of mRNA expression. Hypo-up represents downregulation of the m6A peak and upregulation of mRNA expression. Hypo-down represents downregulation of the m6A peak and downregulation of mRNA expression. (<b>B</b>) Number of DMGs on different chromosomes. (<b>C</b>) Chromosomal view of DMGs. (<b>D</b>) The top 20 significantly enriched GO terms of the DMGs. (<b>E</b>) The top 20 enriched KEGG pathways of DMGs.</p>
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<p>The <span class="html-italic">RHOA</span> gene is a key gene in the network of DMGs. (<b>A</b>) STRING network analysis of 111 DMGs in the MCL cluster. Inflation parameter = 3. (<b>B</b>) Visualization analysis of m6A peaks in the mRNAs of Cluster 1.</p>
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<p>Results of sperm substructural integrity. (<b>A</b>) Sperm were analyzed using the acrosome-specific probe Annexin V-FITC/PI. (<b>B</b>) Sperm were analyzed using the mitochondrial membrane-specific probe Rh123/PI. (<b>C</b>) Flow cytometry plots of acrosomal integrity. (<b>D</b>) Histogram of acrosome integrity. (<b>E</b>) Flow cytometry plots showing mitochondrial membrane integrity. (<b>F</b>) Histogram of mitochondrial membrane integrity. (<b>G</b>) Observation of sperm plasma membrane integrity in the hypo-osmotic swelling test (red arrows indicate sperm cells with intact plasma membranes, blue arrows indicate sperm cells with damaged membranes). (<b>H</b>) Histogram of plasma membrane integrity.</p>
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13 pages, 967 KiB  
Article
Non-Anatomic Reconstruction in Multiligament Knee Injuries: A Functional Approach
by Mihai Hurmuz, Cătălin-Adrian Miu, Daniel Ceachir, Romulus-Fabian Tatu, Mihai Andrei, Bogdan Andor, Alexandru Catalin Motofelea and Călin Tudor Hozan
Medicina 2025, 61(1), 53; https://doi.org/10.3390/medicina61010053 - 1 Jan 2025
Viewed by 443
Abstract
Background/Objectives: Multiligament knee injuries, involving damage to multiple stabilizing structures, present a significant challenge in orthopedic surgery, often resulting in knee instability and compromised function. While anatomic ligament reconstruction has been traditionally advocated, non-anatomic techniques may provide effective alternatives, particularly for patients [...] Read more.
Background/Objectives: Multiligament knee injuries, involving damage to multiple stabilizing structures, present a significant challenge in orthopedic surgery, often resulting in knee instability and compromised function. While anatomic ligament reconstruction has been traditionally advocated, non-anatomic techniques may provide effective alternatives, particularly for patients with moderate functional demands who do not require high-level athletic performance. Material and methods: In this study, we assessed the outcomes of a non-anatomic, hybrid surgical approach involving combined arthroscopic and open non-anatomic ligament reconstruction in 60 patients with multiligament knee injuries. Using simplified reconstruction methods for the medial collateral ligament (MCL) and lateral collateral ligament (LCL), we tailored the procedures to the needs of active, non-professional patients. Functional outcomes were evaluated using the International Knee Documentation Committee (IKDC) Questionnaire, Lysholm Knee Scoring Scale, and Knee Injury and Osteoarthritis Outcome Score (KOOS). Results: Postoperative improvements were significant, with the total IKDC score increasing from a median of 39.1 preoperatively to 75.9 postoperatively, Lysholm from 61.0 to 87.0, and KOOS from 47.6 to 85.7 (p < 0.01). The results demonstrated significant improvements across all scoring systems, with enhanced knee stability, reduced pain, and better quality of life. Conclusions: These findings support the feasibility of non-anatomic reconstructions as a practical solution for patients seeking a return to daily activities and recreational sports without the complexity of full anatomic reconstruction. Full article
(This article belongs to the Special Issue Cutting-Edge Concepts in Knee Surgery)
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<p>MRI demonstrating a single Achilles allograft used to reconstruct both the ACL and MCL, showing graft positioning and fixation.</p>
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<p>MRI demonstrating a single Achilles allograft used to reconstruct ACL, LCL, and ALL, with clear visualization of the graft distribution.</p>
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19 pages, 18487 KiB  
Article
Investigating the Impact of Circulating MicroRNAs on Knee and Hip Osteoarthritis: Causal Links, Biological Mechanisms, and Drug Interactions
by Shanni Li, Yihui Peng, Yang Yu, Hongjun Xu, Zhaojing Yin, Yiyang Du, Mingyang Ma, Zhongyin Ji and Wenwei Qian
Int. J. Mol. Sci. 2025, 26(1), 283; https://doi.org/10.3390/ijms26010283 - 31 Dec 2024
Viewed by 603
Abstract
Osteoarthritis (OA), particularly in the knee and hip, poses a significant global health challenge due to limited therapeutic options. To elucidate the molecular mechanisms of OA and identify potential biomarkers and therapeutic targets, we utilized genome-wide association studies (GWAS) and cis-miRNA expression quantitative [...] Read more.
Osteoarthritis (OA), particularly in the knee and hip, poses a significant global health challenge due to limited therapeutic options. To elucidate the molecular mechanisms of OA and identify potential biomarkers and therapeutic targets, we utilized genome-wide association studies (GWAS) and cis-miRNA expression quantitative trait loci (cis-miR-eQTL) datasets to identify miRNAs associated with OA, revealing 16 that were linked to knee OA and 21 to hip OA. Among these, hsa-miR-1303 was significantly upregulated in both knee and hip OA (IVW: p = 6.8164×1036 and 4.7919×102 respectively, OR > 1) and identified as a key factor in disease progression. Hsa-miR-1303 potentially regulates 30 genes involved in critical signaling pathways, such as the neurotrophin signaling pathway, and interacts with competing endogenous RNAs (ceRNAs) like circ_0041843 and LINC01338, thereby influencing key regulatory proteins such as SUMO2 and PARP1. Pharmacologically, hsa-miR-1303 targets nine druggable genes, including NRAS, H2AZ1, and RPS3, which have implications for drugs like cantharidin and diindolylmethane, potentially critical for developing novel OA treatments. Conversely, hsa-miR-125a-5p and hsa-miR-125b-5p, which are downregulated in both knee and hip OA, are associated with pathways such as HIF-1 and JAK-STAT, which modulate apoptotic signaling and transcriptional regulation. These miRNAs also interact with ceRNAs such as circ_0000254 and SPACA6P-AS, impacting proteins like STAT3, MCL1, and TRAF6. A drug interaction analysis identified 47 potential treatments, including Resveratrol and Acetaminophen, suggesting new therapeutic possibilities for OA management. This study not only highlights the role of miRNAs like hsa-miR-1303 and hsa-miR-125 in OA but also opens avenues for miRNA-based therapeutic development. Full article
(This article belongs to the Section Molecular Pharmacology)
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<p>Forest maps of the causal relationships between miRNAs and the risk of knee osteoarthritis (IVW method). Purple lines represent the confidence intervals (95% CI) for each miRNA listed. Blue dots indicate the point estimates of the odds ratios (ORs) for each miRNA, with positions to the right of the vertical line suggesting an increased risk effect, and to the left suggesting a protective effect.</p>
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<p>Scatter plots for Mendelian randomisation analyses of the causality of miRNAs on knee osteoarthritis. (<b>A</b>) hsa-miR-26b-5p, (<b>B</b>) hsa-miR-28-3p, (<b>C</b>) hsa-miR-30a-3p, (<b>D</b>) hsa-miR-31-5p, (<b>E</b>) hsa-miR-125a-5p, (<b>F</b>) hsa-miR-125b-5p, (<b>G</b>) hsa-miR-130b-5p, (<b>H</b>) hsa-miR-132-3p, (<b>I</b>) hsa-miR-135a-5p, (<b>J</b>) hsa-miR-138-5p, (<b>K</b>) hsa-miR-148a-3p, (<b>L</b>) hsa-miR-1270, (<b>M</b>) hsa-miR-1303, (<b>N</b>) hsa-miR-296-5p, (<b>O</b>) hsa-miR-139-3p, and (<b>P</b>) hsa-miR-218-2-3p.</p>
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<p>Forest maps of the causal relationships between miRNAs and the risk of hip osteoarthritis (IVW method). Purple lines represent the confidence intervals (95% CI) for each miRNA listed. Blue dots indicate the point estimates of the odds ratios (ORs) for each miRNA, with positions to the right of the vertical line suggesting an increased risk effect, and to the left suggesting a protective effect.</p>
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<p>Scatter plots for Mendelian randomization analyses of the causality of miRNAs on hip osteoarthritis. (<b>A</b>) hsa-miR-22-3p, (<b>B</b>) hsa-miR-22-5p, (<b>C</b>) hsa-miR-26b-5p, (<b>D</b>) hsa-miR-27b-3p, (<b>E</b>) hsa-miR-100-5p, (<b>F</b>) hsa-miR-125a-5p, (<b>G</b>) hsa-miR-125b-5p, (<b>H</b>) hsa-miR-130a-3p, (<b>I</b>) hsa-miR-130b-3p, (<b>J</b>) hsa-miR-135a-5p, (<b>K</b>) hsa-miR-151a-3p, (<b>L</b>) hsa-miR-151a-5p, (<b>M</b>) hsa-miR-182-5p, (<b>N</b>) hsa-miR-183-3p, (<b>O</b>) hsa-miR-204-5p, (<b>P</b>) hsa-miR-218-5p, (<b>Q</b>) hsa-miR-339-3p, (<b>R</b>) hsa-miR-339-5p, (<b>S</b>) hsa-miR-1270, (<b>T</b>) hsa-miR-1303, and (<b>U</b>) hsa-miR-133a.</p>
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<p>The potential biological mechanisms and drug interactions of causative risk miRNAs: (<b>A</b>) Prediction of target genes using the TargetScan, miRDB, and miRTarBase databases. (<b>B</b>) KEGG enrichment analysis highlighting the top 6 implicated pathways. (<b>C</b>) Results from GO analysis detailing biological processes, cellular components, and molecular functions. (<b>D</b>,<b>E</b>) Visualization of circRNA-miRNA-mRNA and lncRNA-miRNA-mRNA networks: (<b>D</b>) Red rhomboids represent circRNAs, blue quadrilaterals indicate the gene symbols of circRNAs, yellow ellipses are miRNAs, and green rectangles denote mRNAs. (<b>E</b>) Red rhomboids signify lncRNAs, blue squares show the gene symbols of lncRNAs, yellow ellipses represent miRNAs, and green rectangles indicate mRNAs. (<b>F</b>) Analysis of the protein–protein interaction (PPI) network and identification of key genes. (<b>G</b>,<b>H</b>) Application of the Enrichr platform to identify significant drug interactions: (<b>G</b>) Analysis of human diseases associated with these genes, utilizing the ClinVar 2019 database. (<b>H</b>) Exploration of drugs linked to these genes, employing the DSigDB. Red indicates a significance level of padj &lt; 0.05.</p>
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<p>The potential biological mechanisms and drug interactions of causative protective miRNAs: (<b>A</b>,<b>B</b>) Prediction of target genes for hsa-miR-125a-5p (<b>A</b>) and hsa-miR-125b-5p (<b>B</b>) using TargetScan, StarBase, miRDB, and miRTarBase databases. (<b>C</b>) KEGG enrichment analysis identifying the top 20 pathways involved. (<b>D</b>,<b>E</b>) Results of GO analysis: (<b>D</b>) Biological processes. (<b>E</b>) Cellular components and molecular functions. (<b>F</b>,<b>G</b>) Visualizations of the circRNA-miRNA-mRNA (<b>F</b>) and lncRNA-miRNA-mRNA (<b>G</b>) networks: Red rhomboids represent circRNAs or lncRNAs. Blue squares show the gene symbols of circRNAs or lncRNAs. Yellow ellipses indicate miRNAs. Green rectangles denote mRNAs. (<b>H</b>) Analysis of the protein–protein interaction (PPI) network and identification of key genes. (<b>I</b>,<b>J</b>) Utilization of the Enrichr platform to investigate significant drug interactions: (<b>I</b>) Analysis of human diseases associated with these genes, using the ClinVar 2019 database. (<b>J</b>) Exploration of drugs related to these genes, using the DSigDB option. Red color indicates a significance level of padj &lt; 0.05.</p>
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24 pages, 958 KiB  
Review
Bispecific Antibodies for Lymphoid Malignancy Treatment
by Matteo Bisio, Luca Legato, Filippo Fasano, Corrado Benevolo Savelli, Carola Boccomini, Maura Nicolosi, Elisa Santambrogio, Roberto Freilone, Mattia Novo and Barbara Botto
Cancers 2025, 17(1), 94; https://doi.org/10.3390/cancers17010094 - 31 Dec 2024
Viewed by 615
Abstract
Backgroud: The introduction of highly active immunotherapies has changed the outcome of B-cell non-Hodgkin lymphomas (B-NHLs) in the last two decades. Since then, important progress has been shown using newer and more active immunotherapies, including chimeric antigen receptor T-cell therapy (CAR-T), conjugated monoclonal [...] Read more.
Backgroud: The introduction of highly active immunotherapies has changed the outcome of B-cell non-Hodgkin lymphomas (B-NHLs) in the last two decades. Since then, important progress has been shown using newer and more active immunotherapies, including chimeric antigen receptor T-cell therapy (CAR-T), conjugated monoclonal antibodies, and bispecific antobodies, which currently plays a significant role in the treatment of diffuse large B-cell (DLBCL), follicular (FL), and mantle cell (MCL) lymphoma. Purpose: In this review, we provide an updated overview of recently completed and ongoing BsAb trials in patients with relapsed/refractory(R/R) B-NHL and Hodgkin’s lymphoma, including single-agent results, emerging combinations, safety data, and novel constructs. Conclusions: Bispecific antibodies (BsAbs) are a novel class of “off-the-shelf” T-cell-redirecting drugs capable of targeting various cell-surface antigens. New antigen targets are currently under investigation, such as CD19 × CD3 and CD30 × CD3 or CD30 × CD16, in different settings. BsAbs are among the most promising therapeutic options for lymphoma today since they have demonstrated significant single-agent activity, along with a manageable toxicity profile, in patients with heavily pretreated B-NHL. Full article
(This article belongs to the Special Issue Monoclonal Antibodies in Lymphoma)
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<p>Simplified molecular structure of anti-CD20, anti-CD19, and anti-CD30 bispecific products. Abbreviations: BiTE (bispecific T-cell engager), ScFV (single-chain variable fragment), and TandAbs (tandem diabodies).</p>
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<p>Mechanisms of action and targets of anti-CD20, anti-CD19, and anti-CD30 bispecific products. Abbreviations: BiTE (Bispecific T-cell Engager), HRS cell (Hodgkin and Reed Sternberg cell), NHL cell (Non-Hodgkin Lymphoma cell), and TandAbs (Tandem diabodies).</p>
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11 pages, 2211 KiB  
Article
A Novel Triplet of Alisertib Plus Ibrutinib Plus Rituximab Is Active in Mantle Cell Lymphoma
by Baskaran Subramani, Patrick J. Conway, Aisha Al-Khinji, Kun Zhang, Ritu Pandey and Daruka Mahadevan
Cancers 2024, 16(24), 4257; https://doi.org/10.3390/cancers16244257 - 21 Dec 2024
Viewed by 602
Abstract
Background/Objectives: Aurora (AK) A/B are oncogenic mitotic kinases that when over-expressed are poor prognostic markers in mantle cell lymphoma (MCL). Methods and Results: Alisertib, an AK-A inhibitor, has anti-tumor activity in relapsed/refractory (r/r) MCL patients. We evaluated alisertib plus ibrutinib in [...] Read more.
Background/Objectives: Aurora (AK) A/B are oncogenic mitotic kinases that when over-expressed are poor prognostic markers in mantle cell lymphoma (MCL). Methods and Results: Alisertib, an AK-A inhibitor, has anti-tumor activity in relapsed/refractory (r/r) MCL patients. We evaluated alisertib plus ibrutinib in MCL to abrogate ibrutinib resistance. Alisertib plus ibrutinib was therapeutically synergistic on both Granta-519 insensitive to ibrutinib and JeKo-1 cells sensitive to ibrutinib. Alisertib decreased PI-3K, BTK, p38, HCK, and RSK kinases, indicative of its multipotent effect on cellular proliferation and growth. A mouse xenograft model of Granta-519 demonstrated that alisertib plus ibrutinib had a comparable anti-tumor response to ibrutinib plus rituximab. However, alisertib plus ibrutinib plus rituximab demonstrated significantly stronger tumor growth inhibition than the doublets. Conclusions: Both double and triple combinations showed enhanced survival versus ibrutinib alone. Ibrutinib insensitivity can be disrupted by alisertib plus ibrutinib in MCL. Full article
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<p>MTS cell proliferation assay of MCL cell lines ((<b>A</b>–<b>C</b>) Granta-519; (<b>D</b>–<b>F</b>) JeKo-1). (<b>A</b>) IC50 of alisertib = 23.7 nM. (<b>B</b>) IC50 of Ibrutinib = 14,350 nM. (<b>C</b>) Leftward shift of concentration–effect curve for alisertib plus ibrutinib indicates significant synergism with an IC50 = 12.52 nM. (<b>D</b>) IC50 of alisertib = 3.01 nM. (<b>E</b>) IC50 of ibrutinib = 556.4 nM. (<b>F</b>) Ibrutinib and alisertib are synergistic in JeKo-1 inhibition.</p>
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<p>(<b>A</b>) Granta-519 cells and (<b>B</b>) Jeko-1 cells treated with alisertib in DMSO, 0, 1, 25, 50, 75, and 100 nM alisertib for 24 hrs. Western blotting of these cells showed decreased protein levels of BTK, PI3K, c-Myc, NF-kβ, and Bcl-2 in a dose-dependent manner. Quantification of signal intensity of the blots (<a href="#app1-cancers-16-04257" class="html-app">Supplementary Figure S2A</a> Granta-519 and <a href="#app1-cancers-16-04257" class="html-app">Figure S2B</a> Jeko-1, <a href="#app1-cancers-16-04257" class="html-app">Figure S4 in Supplementary data</a> have the uncropped Western blots).</p>
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<p>Phospho-protein array of Granta-519 cells treated with alisertib 1.0 μM for 7 days to optimize polyploidy showed no significant changes in p53 phosphorylation at Ser-15, Ser-46, or Ser-392. Of the kinases, decreased phosphorylation with alisertib was observed with HCK &gt; RSK 1/2/3 &gt; p38. Phospho-protein array is displayed as a percentage of the pixel density from 2 biologic replicates.</p>
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<p>Gene enrichment analysis of differentially expressed genes for pathways and molecular function pre-/post-alisertib treatment of Granta-519 (BCR-low) cells. (<b>A</b>) Altered signaling pathways by upregulated genes. (<b>B</b>) Gene ontology molecular functions for upregulated genes. (<b>C</b>) Downregulated cellular processes.</p>
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<p>Granta-519 xenograft SCID mouse model of MCL. (<b>A</b>) Tumor growth inhibition: N = 12 mice per cohort treated with ibrutinib, ibrutinib plus alisertib, ibrutinib plus rituximab, and triple therapy versus control. On day 14, the differences between the tumor burdens of the control group and each of the treatment groups were statistically significant (GraphPad Prism version 8.4.1). (<b>B</b>) Kaplan–Meier survival curves of control vs. ibrutinib vs. ibrutinib + alisertib vs. ibrutinib + rituximab and ibrutinib + alisertib + rituximab. There was no significant difference between control and ibrutinib-treated mice (<span class="html-italic">p</span> = 0.6258). There was a significant difference between the control and doublet- and triplet-treated mice (** <span class="html-italic">p</span> &lt; 0.0001) and between the ibrutinib- and combination-treated mice (* <span class="html-italic">p</span> &lt; 0.0001). There was no significant difference between the different combination treatments (<span class="html-italic">p</span> ≥ 0.589). <span class="html-italic">p</span>-values were determined by log-rank analysis.</p>
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4 pages, 2063 KiB  
Correction
Correction: Hazzan et al. Thymic Stromal Lymphopoietin Interferes with the Apoptosis of Human Skin Mast Cells by a Dual Strategy Involving STAT5/Mcl-1 and JNK/Bcl-xL. Cells 2019, 8, 829
by Tarek Hazzan, Jürgen Eberle, Margitta Worm and Magda Babina
Cells 2024, 13(24), 2105; https://doi.org/10.3390/cells13242105 - 19 Dec 2024
Viewed by 316
Abstract
Error in Figure 3 [...] Full article
(This article belongs to the Section Cell Signaling)
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<p>MC maintenance by TSLP critically depends on JNK and STAT5 activation. Impact of (<b>a</b>,<b>c</b>) STAT5 and (<b>b</b>,<b>d</b>) JNK perturbation on TSLP-promoted MC recovery (at 7.5 ng/mL) after 8 h, evaluated by the ratio of YoPro<sup>TM</sup>-1 positivity (corresponding to the percentage of early and late apoptotic/necrotic cells combined) in TSLP-treated versus untreated MCs (described in methods). (<b>a</b>,<b>b</b>) Interference by Accell<sup>®</sup>-mediated RNAi (48 h prior to TSLP treatment); (<b>c</b>,<b>d</b>) interference by specific inhibitors (STAT5 inhibitor: pimozide, JNK inhibitor: SP600125). Top: the results represent the mean ± SEM of six independent experiments. Bottom: representative flow cytometry dot plots (specified in red is the percentage of early and late apoptotic/necrotic cells combined); w/o—without. The data were analyzed by paired <span class="html-italic">t</span>-test, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>TSLP up-regulates Mcl-1 and Bcl-x<sub>L</sub>. TSLP-induced expression (at 7.5 ng/mL) was studied by (<b>a</b>,<b>b</b>) reverse transcription - quantitative polymerase chain reaction (RT-qPCR) analysis of (<b>a</b>) <span class="html-italic">Mcl-1</span> and (<b>b</b>) <span class="html-italic">Bcl-x<sub>L</sub></span>; normalized to the housekeeping gene <span class="html-italic">Cyclophilin B</span>. The results represent the mean ± SEM of nine independent experiments. The data were analyzed by the one-way Anova test with Tukey’s post-test for multiple comparisons, comparing each treatment (40′ or 90′) with the respective control group; * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01; and (<b>c</b>,<b>d</b>) Western blot analysis using the indicated antibodies (shown are representative Western blots out of three independent experiments); the anti-β-Actin antibody served as loading control. Densitometry arbitrary units were normalized to the housekeeping protein.</p>
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<p>Survival prolongation by TSLP depends on Mcl-1 and Bcl-x<sub>L</sub>. Impact of Mcl-1 and Bcl-x<sub>L</sub> knockdown on TSLP-promoted MC recovery (at 7.5 ng/mL), as evaluated by apoptosis reduction in TSLP-treated versus untreated MCs after 8 h. (<b>a</b>) Reduction of YoPro<sup>TM</sup>-1-positivity (corresponding to the percentage of early and late apoptotic/necrotic cells combined) as mean ± SEM of nine independent experiments (left) and representative flow cytometry dot plots (right) (specified in red is the percentage of early and late apoptotic/necrotic cells combined); w/o—without; (<b>b</b>) reduction of caspase-3 activity as mean ± SEM of nine independent experiments. The data were analyzed by paired <span class="html-italic">t</span>-test, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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14 pages, 649 KiB  
Article
The Value of Bone Marrow Assessment by FDG PET/CT, Biopsy and Aspirate in the Upfront Evaluation of Mantle Cell Lymphoma: A Nationwide Cohort Study
by Isabel Ródenas Quiñonero, Javier Marco-Ayala, Tzu-Hua Chen-Liang, Fátima de la Cruz-Vicente, Tycho Baumann, José-Tomás Navarro, Alejandro Martín García-Sancho, Taida Martin-Santos, Javier López-Jiménez, Rafael Andreu, Ester Parra, Andrea Usas, David Alonso, Marta Fernández-González, Pablo Palomo Rumschisky, Laura Frutos, José Luis Navarro, Rosa María Alvarez-Perez, Pilar Sarandeses, Montserrat Cortes, Pilar Tamayo, Jon Uña, Alberto Martínez-Lorca, Cristina Ruiz, María Luisa Lozano and Francisco José Ortuñoadd Show full author list remove Hide full author list
Cancers 2024, 16(24), 4189; https://doi.org/10.3390/cancers16244189 - 16 Dec 2024
Viewed by 611
Abstract
Background: Assessment of bone marrow infiltration (BMI) is part of the initial staging of mantle cell lymphoma (MCL), although BMI evaluated by biopsy (BMB) is not considered significant in the MIPI scales, and standardized recommendations remain lacking. Objectives: To evaluate the accuracy and [...] Read more.
Background: Assessment of bone marrow infiltration (BMI) is part of the initial staging of mantle cell lymphoma (MCL), although BMI evaluated by biopsy (BMB) is not considered significant in the MIPI scales, and standardized recommendations remain lacking. Objectives: To evaluate the accuracy and prognostic impact of BMI assessed by PET/CT and BMB in a large series of MCL patients. Methods: We deconstructed the IPI-NCCN, MIPI, and MIPI-c indices and considered BMI as positive if indicated by a BMB, PET/CT scan, or a combination of both. Results: In the total cohort (n = 148), 110 patients had BMI detected by BMB and 33 by PET/CT. The sensitivity of BMB was higher than that of PET/CT (94.8% vs. 28.4%), as were its negative predictive value (84.2% vs. 27.8%) and accuracy (95.9% vs. 43.9%). In the total cohort, BMI detected by PET/CT showed a significant predictive value for PFS (p = 0.027), while BMB demonstrated independent prognostic value only in combination with PET/CT (p = 0.025). Among intensively treated patients (n = 128), PET/CT had significant clinical impact on PFS (p = 0.030), and when combined with BMB, it provided independent prognostic value for both PFS and OS (p = 0.026 and p = 0.033, respectively). Based on these findings, we propose a prognostic model (MCL-PET-I) that incorporates BMI by PET/CT, allowing for the identification of three groups with distinct clinical outcomes (p < 0.0001 for PFS and p = 0.00025 for OS). Conclusions: In the upfront work of MCL, PET/CT-based BMI has greater prognostic impact, while BMB remains essential for staging. We propose the MCL-PET-I prognostic index, which effectively differentiates between clinical risk groups. Full article
(This article belongs to the Section Cancer Causes, Screening and Diagnosis)
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<p>Overall (<b>A</b>) and progression-free survival (<b>B</b>) according to the MCL-PET-I prognostic model. Risk categories: Low (Score = 0), Intermediate (Score = 1), and High (Score ≥ 2). The prognostic score is based on LDH &gt; UNL, Age &gt; 70 Years, and PET/CT bone marrow involvement (1 Point Each).</p>
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14 pages, 644 KiB  
Article
The Role of the Lawton Instrumental Activities of Daily Living (IADL) Scale in Predicting Adverse Events and Outcomes of R-CHOP Treatment in Elderly Patients with Diffuse Large B-Cell Lymphomas (DLBCLs) or Mantle Cell Lymphomas (MCLs): A Prospective Single-Center Study
by Paula Jabłonowska-Babij, Magdalena Olszewska-Szopa, Stanisław Potoczek, Maciej Majcherek, Agnieszka Szeremet, Krzysztof Kujawa, Tomasz Wróbel and Anna Czyż
Cancers 2024, 16(24), 4170; https://doi.org/10.3390/cancers16244170 - 14 Dec 2024
Viewed by 566
Abstract
Background: The prognostic value of the comprehensive geriatric assessment (CGA) is recognized by many in hematology. However, there is no consensus on the utilization of alternative abbreviated methods to assess disabilities in elderly patients with B-cell non-Hodgkin’s lymphomas (B-NHLs). Aim: The aim of [...] Read more.
Background: The prognostic value of the comprehensive geriatric assessment (CGA) is recognized by many in hematology. However, there is no consensus on the utilization of alternative abbreviated methods to assess disabilities in elderly patients with B-cell non-Hodgkin’s lymphomas (B-NHLs). Aim: The aim of this study was to prospectively analyze the prognostic value of selected CGA tools in predicting adverse events (AEs) and outcomes of R-CHOP or R-CHOP-like treatment in elderly patients with diffuse large B-cell lymphomas (DLBCLs) or mantle cell lymphomas (MCLs). Methods: All patients who participated in this study underwent the Katz Index of Independence in Activities of Daily Living (ADL), the Lawton Instrumental Activities of Daily Living (iADL) scale, the Vulnerable Elders Survey-13 (VES-13), the Groningen Frailty Index (GFI), and the Mini Nutritional Assessment Short Form (MNA-SF) before starting anticancer treatment. Selected clinical predictors were also included in the study. Results: A total of 62 patients with newly diagnosed DLBCLs or MCLs, treated with R-CHOP in the Department of Hematology, Blood Neoplasm and Bone Marrow Transplantation of Wroclaw University Hospital between 1 July 2018, and 1 July 2020, were included in the study. The median age upon initiation of the treatment was 72 years (range: 61–68). Multinomial logistic regression and Cox proportional hazard regression analysis demonstrated that the iADL scale was significantly associated with response to treatment (OR = 1.21, 95% CI: 1.02–1.44, p = 0.03), was inversely related to non-hematological AEs (OR = 0.81, 95% CI: 0.71–0.92, p = 0.001), and was a statistically significant predictor of longer overall survival (OS) (HR = 0.83, 95% CI: 0.79–0.89, p < 0.001) and longer progression-free survival (PFS) (HR = 0.91, 95% CI: 0.83–0.99, p = 0.03). Conclusions: These results underscore the effectiveness of the iADL scale as a quick, easy-to-use, and universal CGA tool for evaluating crucial functional status before treatment in elderly hematological patients with DLBCLs or MCLs. Full article
(This article belongs to the Section Cancer Survivorship and Quality of Life)
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<p>Kaplan–Meier survival curve for overall survival in the study group.</p>
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<p>Kaplan–Meier survival curve for progression-free survival in the study group.</p>
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24 pages, 7280 KiB  
Article
Caryophyllene Oxide, a Bicyclic Terpenoid Isolated from Annona macroprophyllata with Antitumor Activity: In Vivo, In Vitro, and In Silico Studies
by Jesica Ramírez-Santos, Fernando Calzada, Normand García-Hernández, Elizabeth Barbosa, Claudia Velázquez and Miguel Valdes
Int. J. Mol. Sci. 2024, 25(24), 13355; https://doi.org/10.3390/ijms252413355 (registering DOI) - 12 Dec 2024
Viewed by 517
Abstract
The Annona genus contains some species used in Mexican traditional medicine for the treatment cancer, including Annona macroprophyllata (A. macroprophyllata). The present study aimed to investigate the anticancer activity of caryophyllene oxide (CO) isolated from A. macroprophyllata using in vivo, in vitro, [...] Read more.
The Annona genus contains some species used in Mexican traditional medicine for the treatment cancer, including Annona macroprophyllata (A. macroprophyllata). The present study aimed to investigate the anticancer activity of caryophyllene oxide (CO) isolated from A. macroprophyllata using in vivo, in vitro, and in silico approaches. The identification of CO was performed using gas chromatography-mass spectroscopy and NMR methods. Antilymphoma activity was evaluated in male and female Balb/c mice inoculated with U-937 cells. Cytotoxic activity was evaluated using the WST method and flow cytometry was used to determine the type of cell death. Acute oral toxicity was determined, and a molecular docking study was performed using target proteins associated with cancer, including, HMG-CoA, Bcl-2, Mcl-1, and VEGFR-2. Results showed that CO exhibited significant antilymphoma and cytotoxic activities, and its effects were comparable to MTX. In addition, flow cytometry showed that the anticancer activity of CO could be mediated by the induction of late apoptosis and necrosis. The result for the acute oral toxicity of CO was classified in category 4, suggesting it is low risk. Finally, molecular coupling studies showed that CO had more affinity for the enzymes HMG-CoA reductase and Bcl-2. Our study provides evidences that CO is a potential anticancer agent for the treatment of histiocytic lymphoma. Full article
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<p>Pharmacological activities reported for the leaves, seeds and root bark of <span class="html-italic">Annona macroprophyllata</span>.</p>
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<p>Structure of caryophyllene oxide obtained from petroleum ether extract from <span class="html-italic">A. macroprophyllata</span> leaves.</p>
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<p>Gas chromatography-mass spectrometry analysis of petroleum ether extract from <span class="html-italic">A. macroprophyllata</span> leaves (PEAm) and caryophyllene oxide standard. The x-axis indicates the retention time in minutes, while the y-axis indicates the peak % signal intensity.</p>
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<p>Mass spectrum of caryophyllene oxide.</p>
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<p><sup>1</sup>H-NMR spectra (<b>A</b>) and <sup>13</sup>C-NMR spectra (<b>B</b>) of caryophyllene oxide.</p>
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<p>Cytotoxic activity of CO in the U-937 cell line. The graphs show the inhibition of cell growth caused by methotrexate (<b>A</b>) and caryophyllene oxide (<b>B</b>) at different concentrations after 24 h of exposure. The assays were performed in triplicate and these data were used to calculate the CC<sub>50</sub> by lineal regression analysis.</p>
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<p>Lymph node weights (g) of female mice (<b>A</b>) and male mice (<b>B</b>). Healthy control (HC tween 80, 2% <span class="html-italic">v</span>/<span class="html-italic">v</span> in water), untreated control (U-937), methotrexate (MTX) 1.25 mg/kg and caryophyllene oxide (CO) at 1.25, 5 and 10 mg/kg. The graph shows the weight of the axillary and inguinal lymph nodes as follows: left axillary (LA), right axillary (RA), left inguinal (LI), and right inguinal (IR). Results obtained by ANOVA one-way analysis followed by Dunnett’s test for multiple comparison. Data are expressed as mean ± SEM, (<span class="html-italic">n</span> = 6); * <span class="html-italic">p</span> &lt; 0.05 vs. HC, # <span class="html-italic">p</span> &lt; 0.05 vs. U-937, + <span class="html-italic">p</span> &lt; 0.05 vs. MTX.</p>
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<p>Apoptosis assay using annexin V/PI staining. The apoptotic and necrotic effect of CO is observed. U-937 cells were exposed for 24 h to, vehicle 0.02% dimethyl sulfoxide (DMSO) (<b>A</b>), methotrexate (CC<sub>50</sub> 118.87 µg/mL) (<b>B</b>), and caryophyllene oxide (CC<sub>50</sub> 24.25 µg/mL) (<b>C</b>). The histogram zones indicate the following: R1 = necrosis, annexin V-FITC negative/PI positive (− +); R2 = late apoptosis, annexin V-FITC positive/PI positive (+ +); R3 = viable cells, annexin V-FITC negative/PI negative (− −); R4 = early apoptosis, annexin V-FITC positive/PI negative (+ −). The experiments were conducted in triplicate. Data are expressed as means ± SEM, <span class="html-italic">n</span> = 3; *<span class="html-italic">p</span> &lt; 0.05 vs DMSO.</p>
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<p>Results of molecular docking. The images show the binding site position and the 3D, and 2D interactions for caryophyllene oxide on each target. Caryophyllene oxide (blue) and interactions with amino acid residues (orange) in HMG-CoA reductase (<b>A</b>); and HMG-CoA substrate (yellow) and interactions with amino acid residues (red) in HMG-CoA reductase (<b>B</b>). For Bcl-2 protein, caryophyllene oxide (blue) (<b>C</b>); and navitoclax (pink) (<b>D</b>), in both cases interactions with amino acid residues (yellow) are highlighted. 2D orange-red interactions are unfavorable interactions, green interactions are polar-type interactions, and lilac interactions are nonpolar interactions.</p>
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<p>Results of molecular docking. The images show the binding site position and the 3D, and 2D interactions for caryophyllene oxide on each target. For Mcl-1, caryophyllene oxide (blue) (<b>A</b>); and 9EAs (green)(<b>B</b>), in both cases interactions with amino acid residues (orange) are highlighted. For VEGFR-2, caryophyllene oxide (blue) (<b>C</b>); and axitinib (green) (<b>D</b>), in both cases interactions with amino acid residues (lilac) are highlighted. 2D orange-red interactions are unfavorable interactions, green interactions are polar-type interactions, and lilac interactions are nonpolar interactions.</p>
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9 pages, 741 KiB  
Article
Multicenter Study on the Impact of the Masker Babble Spectrum on the Acceptable Noise Level (ANL) Test
by Mark Laureyns, Giorgia Pugliese, Melinda Freyaldenhoven Bryan, Marieke Willekens, Anna Maria Gasbarre, Diego Zanetti, Julien Gilson, Paul Van Doren and Federica Di Berardino
Audiol. Res. 2024, 14(6), 1075-1083; https://doi.org/10.3390/audiolres14060088 - 7 Dec 2024
Viewed by 572
Abstract
Introduction: Acceptable Noise Level (ANL) is defined as the most comfortable level (MCL) intensity for speech and is calculated by subtracting the maximum noise tolerable by an individual. The ANL test has been used over time to predict hearing aid use and the [...] Read more.
Introduction: Acceptable Noise Level (ANL) is defined as the most comfortable level (MCL) intensity for speech and is calculated by subtracting the maximum noise tolerable by an individual. The ANL test has been used over time to predict hearing aid use and the impact of digital noise reduction. This study analyzes this impact by using different masker babble spectra when performing the ANL test in both hearing-impaired and healthy subjects in three different languages (Dutch, French, and Italian). Materials and Methods: A total of 198 patients underwent the ANL test in their native language using a standardized protocol. The babble file was speech-weighted to match the long-term spectrum of the specific ANL language version. ANL was proposed in three different masking conditions: with multitalker Matched babble speech noise, with the same masking signal with the spectrum reduced from 2 kHz onwards (High Cut), and with the spectrum increased from 2 kHz onwards (High Boost). Results: In all of the comparisons among the three languages, ANL with High Boost noise gave significantly higher (worse) scores than ANL with Matched noise (p-value S1: <0.0001, S2: <0.0001, S3: 0.0003) and ANL with High Cut noise (p-value S1: 0.0002, S2: <0.0001, S3: <0.0001). The ANL values did not show any significant correlation with age and gender. In French, a weak correlation was found between ANL with High Cut noise and the Fletcher index of the worst ear. In Italian, a weak correlation was found between both ANL with Matched and High Boost noise and the Fletcher index of the best ear. Conclusions: ANL with High Boost added to noise stimuli was less acceptable for all patients in all of the languages. The ANL results did not vary in relation to the patients’ characteristics. This study confirms that the ANL test has potential application for clinical use regardless of the native language spoken. Full article
(This article belongs to the Special Issue Hearing Loss: Causes, Symptoms, Diagnosis, and Treatment)
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<p>The long-term spectrum of the 3 language versions of the ANL test. High Boost masker babble files: top dotted lines; High Cut masker babble files: bottom dotted lines; speech-weighted masker babble files: middle dotted lines; running speech files: full lines. dBFS: dB Full Scale.</p>
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<p>Box and whisker plot (representing the median value, the 25th and 75th percentiles, and the max and minimum values) with the ANL results for the total population at the 3 sites with different ANL masker types (Matched noise: black line with white filling; High Boost noise: black line with grey filling; High Cut noise: grey line with white filling).</p>
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19 pages, 5454 KiB  
Article
Evaluation of Antifibrotic Mechanisms of 3′5-Dimaleamylbenzoic Acid on Idiopathic Pulmonary Fibrosis: A Network Pharmacology and Molecular Docking Analysis
by Karina González-García, Jovito Cesar Santos-Álvarez, Juan Manuel Velázquez-Enríquez, Cecilia Zertuche-Martínez, Edilburga Reyes-Jiménez, Rafael Baltiérrez-Hoyos and Verónica Rocío Vásquez-Garzón
Drugs Drug Candidates 2024, 3(4), 860-878; https://doi.org/10.3390/ddc3040048 - 6 Dec 2024
Viewed by 1172
Abstract
Background: Idiopathic pulmonary fibrosis (IPF) is a chronic, disabling disorder of unknown etiology, poor prognosis, and limited therapeutic options. Previously, 3′5-dimaleamylbenzoic acid (3′5-DMBA) was shown to exert resolving effects in IPF, offering a promising alternative for treating this disease; however, the molecular mechanisms [...] Read more.
Background: Idiopathic pulmonary fibrosis (IPF) is a chronic, disabling disorder of unknown etiology, poor prognosis, and limited therapeutic options. Previously, 3′5-dimaleamylbenzoic acid (3′5-DMBA) was shown to exert resolving effects in IPF, offering a promising alternative for treating this disease; however, the molecular mechanisms associated with this effect have not been explored. Objetive: We evaluated the potential antifibrotic mechanisms of 3′5-DMBA by network pharmacology (NP) and molecular docking (MD). Methods: 3′5-DMBA-associated targets were identified by screening in SwissTargetPrediction. IPF-associated targets were identified using lung tissue meta-analysis and public databases. Common targets were identified, and a protein–protein interaction (PPI) network was constructed; we ranked the proteins in the PPI network by topological analysis. MD validated the binding of 3′5-DMBA to the main therapeutic targets. Results: A total of 57 common targets were identified between 3′5-DMBA and IPF; caspase 8, 9, 3, and 7; myeloid leukemia-induced cell differentiation protein Mcl-1; and poly [ADP-ribose] polymerase 1 are primary targets regulating PPI networks. Functional analysis revealed that the common targets are involved in the pathological features of tissue fibrosis and primarily in the apoptotic process. MD revealed favorable interaction energies among the three main targets regulating PPI networks. Conclusions: NP results suggest that the antifibrotic effect of 3′5-DMBA is due to its regulation of the pathological features of IPF, mainly by modulating signaling pathways leading to apoptosis, suggesting its therapeutic potential to treat this disease. Full article
(This article belongs to the Section In Silico Approaches in Drug Discovery)
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<p>Identification of DEGs in IPF. Clustering heatmaps showing the results of the gene expression meta-analysis. (<b>a</b>) Clustering heatmap of total DEGs, (<b>b</b>) clustering heatmap of the top 100 DEGs. The red color shows overexpression levels, and the green color shows underexpression levels.</p>
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<p>Identification of common targets between 3′5-DMBA and IPF. The Venn diagram shows the intersection between the dataset corresponding to targets associated with 3′5-DMBA in pink purple and the dataset corresponding to targets associated with IPF in green.</p>
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<p>Functional enrichment analysis of common targets between 3′5-DMBA and IPF. The top 10 terms from the gene ontology (GO) analysis for the biological process (BP), molecular functions (MF), KEGG and REACTOME pathway enrichment analysis categories are shown plotted. The counts are plotted for all cases.</p>
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<p>PPI network of common targets between 3′5-DMBA and IPF. The width of the lines between proteins indicates the different types of interaction evidence.</p>
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<p>Topological analysis of the PPI network. The top 15 common targets between 3′5-DMBA and IPF were identified using the cytoHubba MCC method in Cytoscape. The red-to-yellow gradient indicates the decreasing order of importance within the network.</p>
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<p>Functional enrichment analysis of the KEGG pathways of the top 15 common targets between 3′5-DMBA and IPF. (<b>a</b>) Dot plot showing the KEGG pathways in which the top 15 common targets between 3′5-DMBA and IPF are significantly enriched. (<b>b</b>) KEGG plot of the most enriched pathway in the functional analysis according to ShinyGO. The location of common targets between 3′5-DMBA and IPF are shown in red boxes. Solid black arrow lines indicate direct activation, arrow lines with black dots indicate indirect activation, lines with black horizontal endings indicate inhibition.</p>
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<p>Schematic representation of molecular docking in apoptosis-initiating proteins. The 3D and 2D models of the interaction between 3′5-DMBA. (<b>a</b>) The interaction energy of CASP8 is −0.6 kcal/mol, (<b>b</b>) the interaction energy of CASP9 is −7.2 kcal/mol.</p>
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<p>Schematic representation of molecular docking in apoptosis-executioner proteins. (<b>a</b>) The interaction energy of CASP3 is −7.0 kcal/mol, (<b>b</b>) the interaction energy of CASP7 is −7.3 kcal/mol.</p>
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<p>Schematic representation of molecular docking in proteins related to apoptosis. (<b>a</b>) The interaction energy of MCL-1 is −8.1 kcal/mol (<b>b</b>) the interaction energy of PARP1 is −9.1 kcal/mol.</p>
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14 pages, 2293 KiB  
Article
Calaspargase-Pegol-Mknl Combined with BCL-2 and MCL-1 Inhibition for Acute Myeloid Leukemia
by Dominique Bollino, Xinrong Ma, Kayla M. Tighe, Andrea Casildo, Katharina Richard, Antonino Passaniti, Brandon Carter-Cooper, Erin T. Strovel and Ashkan Emadi
Int. J. Mol. Sci. 2024, 25(23), 13091; https://doi.org/10.3390/ijms252313091 - 5 Dec 2024
Viewed by 675
Abstract
Our previous studies have demonstrated that pegcrisantaspase (PegC), a long-acting Erwinia asparaginase, synergizes with the BCL-2 inhibitor Venetoclax (Ven) in vitro and in vivo; however, the anti-leukemic activity of E. coli-derived asparaginases in combination with BCL-2 inhibition, and potential synergy with inhibitors [...] Read more.
Our previous studies have demonstrated that pegcrisantaspase (PegC), a long-acting Erwinia asparaginase, synergizes with the BCL-2 inhibitor Venetoclax (Ven) in vitro and in vivo; however, the anti-leukemic activity of E. coli-derived asparaginases in combination with BCL-2 inhibition, and potential synergy with inhibitors of MCL-1, a key resistance factor of BCL-2 inhibition, has yet to be determined. Using a combination of human AML cells lines, primary samples, and in vivo xenograft mouse models, we established the anti-leukemic activity of the BCL-2 inhibitor S55746 and the MCL-1 inhibitor S63845, alone and in combination with the long-acting E. coli asparaginase calaspargase pegol-mknl (CalPegA). We report that CalPegA enhances the anti-leukemic effect of S55746 but does not impact the activity of S63845. The S55746-CalPegA combination inhibited protein synthesis and increased eIF4E/4EBP1 interaction, suggesting an inhibition of translational complex formation. These results support the clinical evaluation of CalPegA in combination with BCL-2 inhibition for AML. Full article
(This article belongs to the Special Issue New Therapies for Acute Myeloid Leukemia)
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<p>AML cell lines are sensitive to CalPegA, S55746, and S63845. AML cell lines were plated overnight and then treated the next day with serially diluted S55746, S63845, or CalPegA. Cell proliferation was assessed 72 h after treatment using WST-1. Dose–response curves were generated and IC<sub>50</sub> values were calculated using GraphPad Prism. Representative dose curves are shown for MOLM14 and MonoMac6. The table contains IC<sub>50</sub> values ± standard error of margin (SEM) for all AML cell lines tested.</p>
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<p>CalPegA potentiates anti-leukemic activity of S55746, but not S63845. (<b>A</b>) MOLM14 and MonoMac6 cells were treated with serially diluted S55746 or S63845 alone or in combination with CalPegA (IC<sub>20</sub>). Cell proliferation was measured 72 h after treatment by WST-1. (<b>B</b>) MOLM14 and MonoMac6 cells were treated with fixed-ratio doses of CalPegA and S55746 for 72 h followed by WST-1 termination. Combination indexes (CI) were calculated using Compusyn software. (<b>C</b>) The percentage of viable cells after treatment with S55746, S63845, or CalPegA alone and in combination at the IC<sub>50</sub> values for 72 h was determined by trypan blue exclusion. Data are expressed as the percentage of the vehicle control and statistical analyses between the vehicle and treatment groups were performed using unpaired <span class="html-italic">t</span>-tests. **** <span class="html-italic">p</span> &lt; 0.0001, *** <span class="html-italic">p</span> &lt; 0.001, * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>S55746-CalPegA combination inhibits global protein synthesis and increases eIF4E/4EPB1 interaction. (<b>A</b>) MOLM14 and MonoMac6 cells were treated with S63845, S55746, and CalPegA alone or in combination (IC<sub>50</sub> values) for 24 h followed by a 20 min incubation with puromycin (1 µg/mL). Cell lysates were subjected to immunoblotting with the anti-puromycin antibody (SUnSET [surface sensing of translation] assay). Actin was used as a loading control. The bar diagram shows the mean ± SEM for at least three independent experiments, and unpaired <span class="html-italic">t</span>-tests were used to compare puromycin intensity in the vehicle group to the treatment groups. ** <span class="html-italic">p</span> &lt; 0.01, * <span class="html-italic">p</span> &lt; 0.05. (<b>B</b>) Protein lysates (250 µg) from MOLM14 and MonoMac6 cells treated for 24 h, as in (<b>A</b>), were incubated with antibody against 4EBP1 overnight followed by incubation with Protein A beads. The beads were washed, resuspended in SDS sample loading buffer, and boiled, and then the proteins were separated on 4–15% polyacrylamide gels. Membranes were immunoblotted with antibodies against eIF4E and 4EBP1, and results are expressed as the ratio of eIF4E to 4EBP1. The bar diagram represents densitometric quantification of three independent experiments. *** <span class="html-italic">p</span> &lt; 0.001, ** <span class="html-italic">p</span> &lt; 0.01, * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>CalPegA potentiates the anti-leukemic activity of S55746 in vivo. (<b>A</b>,<b>B</b>) MV411-luc cells (1 × 10<sup>6</sup>) were injected IV into NRG mice, and after confirmation of engraftment, mice were treated with either vehicle, CalPegA (100 IU/kg, IV, 1×/week), S55746 (75 mg/kg, oral gavage, 5×/week), S63845 (25 mg/kg, IV, 2×/week), CalPegA + S55746, or CalPegA + S63845. (<b>A</b>) Percent body weight changes versus time. (<b>B</b>) Photon intensity (leukemia burden) over time. (<b>C</b>,<b>D</b>) AML45-luc cells (1 × 10<sup>6</sup>) were injected IV into NRG mice, and after confirmation of engraftment, mice were treated as in (<b>A</b>). Treatment for all groups was paused from days 9–19 due to weight loss. Treatment resumed for 2 weeks, and then CalPegA dose was reduced to 75 IU/kg after day 36 due to observed weight loss. (<b>C</b>) Percent body weight changes versus time. (<b>D</b>) Photon intensity (leukemia burden) over time. Statistical analysis was performed using one-way ANOVA. **** <span class="html-italic">p</span> &lt; 0.0001, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>CalPegA depletes plasma asparagine in vivo but does not affect eIF4E and 4EBP1 phosphorylation status. (<b>A</b>) Plasma was isolated from whole blood of AML45-luc tumor-bearing mice and concentrations of glutamine and asparagine (µM) were measured. Statistical analyses to compare vehicle and treatment groups were performed using unpaired <span class="html-italic">t</span>-tests. **** <span class="html-italic">p</span> &lt; 0.0001, * <span class="html-italic">p</span> &lt; 0.05. (<b>B</b>) Western blot analysis of bone marrow cells isolated from AML45-luc tumor-bearing mice. Lysates were probed with the indicated antibodies, and results are expressed as the ratio of phosphorylated to total eIF4E and 4EBP1, normalized to loading control (actin). Unpaired <span class="html-italic">t</span>-tests were performed to compare vehicle to treatment groups and no statistically significant differences were observed.</p>
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11 pages, 678 KiB  
Article
Low-Frequency PPM1D Gene Mutations Associated with Inferior Treatment Response to CD19 Targeted CAR-T Cell Therapy in Mantle Cell Lymphoma
by Katja Seipel, Lynn Benninger, Ulrike Bacher and Thomas Pabst
Therapeutics 2024, 1(2), 95-105; https://doi.org/10.3390/therapeutics1020009 - 29 Nov 2024
Viewed by 535
Abstract
Background/Objectives: Mantle cell lymphoma (MCL) represents a rare B-cell lymphoma subtype with rather high relapse rates. Somatic mutations in the PPM1D gene were shown to be associated with adverse outcomes in patients with diffuse large B-cell lymphoma (DLBCL) who received CD19 CAR-T-cell therapy [...] Read more.
Background/Objectives: Mantle cell lymphoma (MCL) represents a rare B-cell lymphoma subtype with rather high relapse rates. Somatic mutations in the PPM1D gene were shown to be associated with adverse outcomes in patients with diffuse large B-cell lymphoma (DLBCL) who received CD19 CAR-T-cell therapy with tisa-cel, which may also apply to mantle cell lymphoma receiving brexu-cel CAR-T-cells. Methods: In this study, we determined the prevalence of PPM1D mutations in peripheral blood cells of MCL patients before CAR-T-cell infusion and analyzed the impact of low-frequency PPM1D mutations on efficacy and safety aspects of brexu-cel CAR-T-cell treatment in the first 16 r/r MCL patients enrolled at Inselspital Bern. Results: The prevalence of low-frequency PPM1D gene mutations was 25%, with variant allele frequencies (VAF) of 0.011 to 0.099. Clinical response was analyzed in the PPM1D mutated (PPM1Dmut) vs. PPM1D wild-type (PPM1Dwt) groups with median progression-free survival of 1 versus 32 months (p = 0.07) and median overall survival of 1.5 vs. 27 months (p = 0.001). Conclusions: Our data suggest that low-frequency PPM1D gene mutations in peripheral blood cells may predict inferior outcomes in patients with mantle cell lymphoma treated with CAR-T-cell therapy. Full article
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<p>Structure and variants of the PPM1D gene and the encoded Wip1 protein phosphatase. (<b>A</b>) PPM1D gene. (<b>B</b>) PPM1D protein phosphatase (Wip1) with central phosphatase domain and C-terminal degron region. (<b>C</b>) Lollipop plot indicating the positions of the six identified somatic mutations. NT: nucleotide; AA: amino acid. * (asterisk) = translation termination (stop) codon.</p>
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<p>Clinical outcome in MCL patients treated with CD19 targeted (FMC63)-CAR-T-cell therapy. PFS (<b>A</b>) and OS (<b>B</b>) of MCL patients receiving brexu-cel CAR-T cell therapy were analyzed by Kaplan–Meyer, stratified by PPM1D status.</p>
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