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Keywords = Latrunculia biformis

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11 pages, 3569 KiB  
Article
New Discorhabdin B Dimers with Anticancer Activity from the Antarctic Deep-Sea Sponge Latrunculia biformis
by Fengjie Li, Dorte Janussen and Deniz Tasdemir
Mar. Drugs 2020, 18(2), 107; https://doi.org/10.3390/md18020107 - 11 Feb 2020
Cited by 15 | Viewed by 4032
Abstract
Latrunculia sponges represent a rich source of discorhabdin-type pyrroloiminoquinone alkaloids, a few of which comprise a dimeric structure. The anticancer-activity-guided isolation of the n-hexane subextract of the Antarctic deep-sea sponge Latrunculia biformis yielded the known compound (−)-(1R,2R,6R [...] Read more.
Latrunculia sponges represent a rich source of discorhabdin-type pyrroloiminoquinone alkaloids, a few of which comprise a dimeric structure. The anticancer-activity-guided isolation of the n-hexane subextract of the Antarctic deep-sea sponge Latrunculia biformis yielded the known compound (−)-(1R,2R,6R,8S,6’S)-discorhabdin B dimer (1) and two new derivatives, (−)-(1S,2R,6R,8S,6’S)-discorhabdin B dimer (2) and (−)-(1R,2R,6R,8S,6’S)-16’,17’-dehydrodiscorhabdin B dimer (3). The chemical structures of compounds 13 were elucidated by means of HR-ESIMS, NMR, [α]D, ECD spectroscopy, and a comparison with the previously reported discorhabdin analogs. Compounds 1 and 2 showed significant in vitro anticancer activity against the human colon cancer cell line (HCT-116), with IC50 values of 0.16 and 2.01 µM, respectively. Compared to monomeric discorhabdins, dimeric discorhabdins are very rare in Nature. This study adds two new discorhabdin dimers (2 and 3) to this small pyrroloiminoquinone subfamily. This is also the first report of compound 1 as a natural product and the first assessment of its in vitro anticancer activity. Full article
(This article belongs to the Special Issue Advances in Marine Alkaloids)
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<p>Chemical structures of compounds <b>1</b>–<b>3</b>.</p>
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<p>Key COSY (bold lines) and HMBC (arrows) correlations observed for compound <b>2</b>. The letters <b>A</b> and <b>B</b> indicate each discorhabdin monomer.</p>
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<p>(<b>A</b>) Key NOE correlations drawn on a Chem3D optimized model of <b>2</b>. (<b>B</b>) Two proposed molecular models (<b>B1</b> and <b>B2</b>) of <b>2</b>.</p>
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<p>Experimental ECD spectra (MeOH) of the TFA salts of (−)-<b>2</b> (black) and (−)-<b>3</b> (red).</p>
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<p>Key COSY (in bold) and HMBC (arrows) correlations observed for compound <b>3</b>.</p>
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<p>(<b>A</b>) Key NOE correlations drawn on a Chem3D optimized model of <b>3</b>. (<b>B</b>) Two proposed molecular models (<b>B1</b> and <b>B2</b>) of <b>3</b>.</p>
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19 pages, 3992 KiB  
Article
New Discorhabdin Alkaloids from the Antarctic Deep-Sea Sponge Latrunculia biformis
by Fengjie Li, Christian Peifer, Dorte Janussen and Deniz Tasdemir
Mar. Drugs 2019, 17(8), 439; https://doi.org/10.3390/md17080439 - 25 Jul 2019
Cited by 32 | Viewed by 5492
Abstract
The sponge genus Latrunculia is a prolific source of discorhabdin type pyrroloiminoquinone alkaloids. In the continuation of our research interest into this genus, we studied the Antarctic deep-sea sponge Latrunculia biformis that showed potent in vitro anticancer activity. A targeted isolation process guided [...] Read more.
The sponge genus Latrunculia is a prolific source of discorhabdin type pyrroloiminoquinone alkaloids. In the continuation of our research interest into this genus, we studied the Antarctic deep-sea sponge Latrunculia biformis that showed potent in vitro anticancer activity. A targeted isolation process guided by bioactivity and molecular networking-based metabolomics yielded three known discorhabdins, (−)-discorhabdin L (1), (+)-discorhabdin A (2), (+)-discorhabdin Q (3), and three new discorhabdin analogs (−)-2-bromo-discorhabdin D (4), (−)-1-acetyl-discorhabdin L (5), and (+)-1-octacosatrienoyl-discorhabdin L (6) from the MeOH-soluble portion of the organic extract. The chemical structures of 16 were elucidated by extensive NMR, HR-ESIMS, FT-IR, [α]D, and ECD (Electronic Circular Dichroism) spectroscopy analyses. Compounds 1, 5, and 6 showed promising anticancer activity with IC50 values of 0.94, 2.71, and 34.0 µM, respectively. Compounds 16 and the enantiomer of 1 ((+)-discorhabdin L, 1e) were docked to the active sites of two anticancer targets, topoisomerase I-II and indoleamine 2,3-dioxygenase (IDO1), to reveal, for the first time, the binding potential of discorhabdins to these proteins. Compounds 5 and 6 are the first discorhabdin analogs with an ester function at C-1 and 6 is the first discorhabdin bearing a long-chain fatty acid at this position. This study confirms Latrunculia sponges to be excellent sources of chemically diverse discorhabdin alkaloids. Full article
(This article belongs to the Special Issue Bioactive Molecules from Extreme Environments)
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<p>In vitro activity of MeOH subextract (M) and its C18 solid phase extraction (SPE) fractions (M1–M8) against six cancer cell lines. Test concentration: 100 µg/mL. Positive control: Doxorubicine. Solvent control: 0.5% DMSO.</p>
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<p>Molecular cluster observed in SPE fractions of <span class="html-italic">L. biformis</span> MeOH subextract. Numbers within the nodes indicate parent ions, and edge thickness represents the cosine similarity between nodes. Red nodes: Discorhabdin esters; Grey nodes: Other discorhabdin analogs.</p>
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<p>Chemical structures of compounds <b>1</b>–<b>6</b>.</p>
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<p>Key 2D NMR correlations observed for compound <b>4</b>. (<b>A</b>) The COSY (in bold), key H→C HMBC (arrows); (<b>B</b>) key H→H NOESY correlations (dashed line).</p>
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<p>Key 2D NMR correlations observed for compound <b>5</b>. (<b>A</b>) The COSY (in bold), key H→C HMBC (arrows); (<b>B</b>) key H→H NOESY correlations (dashed line).</p>
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<p>Key 2D NMR correlations observed for compound <b>6</b>. (<b>A</b>) The COSY (in bold), key H→C HMBC (arrows); (<b>B</b>) key H→H NOESY correlations (dashed line).</p>
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<p>(<b>A</b>) Calculated 3D binding modes of compounds <b>1</b>–<b>5</b> and <b>1e</b> in the active site of topoisomerase I (pdb 1T8I) also containing a DNA molecule (colored in red) with a single strand break; (<b>B</b>) corresponding 2D ligand interaction diagrams showing key interactions of compounds <b>1</b>–<b>5</b> and <b>1e</b> towards topoisomerase I and DNA.</p>
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<p>3D binding poses (<b>A</b>) and ligand interaction diagrams (<b>B</b>) of compounds <b>1</b>–<b>4</b> and <b>1e</b> in the active site of IDO1 (pdb 6AZW). Key interactions are shown. The binding pocket is shown in a similar orientation, respectively. Ligand docking revealed plausible binding poses for compounds <b>1</b>–<b>4</b> and <b>1e</b>, but not for compounds <b>5</b> and <b>6</b>.</p>
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17 pages, 3365 KiB  
Article
Targeted Isolation of Tsitsikammamines from the Antarctic Deep-Sea Sponge Latrunculia biformis by Molecular Networking and Anticancer Activity
by Fengjie Li, Dorte Janussen, Christian Peifer, Ignacio Pérez-Victoria and Deniz Tasdemir
Mar. Drugs 2018, 16(8), 268; https://doi.org/10.3390/md16080268 - 2 Aug 2018
Cited by 23 | Viewed by 6374
Abstract
The Antarctic deep-sea sponge Latrunculia (Latrunculia) biformis Kirkpatrick, 1908 (Class Demospongiae Sollas, Order Poecilosclerida Topsent, Latrunculiidae Topsent) was selected for chemical analyses due to its potent anticancer activity. Metabolomic analysis of its crude extract by HRMS/MS-based molecular networking showed the presence [...] Read more.
The Antarctic deep-sea sponge Latrunculia (Latrunculia) biformis Kirkpatrick, 1908 (Class Demospongiae Sollas, Order Poecilosclerida Topsent, Latrunculiidae Topsent) was selected for chemical analyses due to its potent anticancer activity. Metabolomic analysis of its crude extract by HRMS/MS-based molecular networking showed the presence of several clusters of pyrroloiminoquinone alkaloids, i.e., discorhabdin and epinardin-type brominated pyridopyrroloquinolines and tsitsikammamines, the non-brominated bis-pyrroloiminoquinones. Molecular networking approach combined with a bioactivity-guided isolation led to the targeted isolation of the known pyrroloiminoquinone tsitsikammamine A (1) and its new analog 16,17-dehydrotsitsikammamine A (2). The chemical structures of the compounds 1 and 2 were elucidated by spectroscopic analysis (one-dimensional (1D) and two-dimensional (2D) NMR, HR-ESIMS). Due to minute amounts, molecular modeling and docking was used to assess potential affinities to potential targets of the isolated compounds, including DNA intercalation, topoisomerase I-II, and indoleamine 2,3-dioxygenase enzymes. Tsitsikammamines represent a small class of pyrroloiminoquinone alkaloids that have only previously been reported from the South African sponge genus Tsitsikamma Samaai & Kelly and an Australian species of the sponge genus Zyzzya de Laubenfels. This is the first report of tsitsikammamines from the genus Latrunculia du Bocage and the successful application of molecular networking in the identification of comprehensive chemical inventory of L.biformis followed by targeted isolation of new molecules. This study highlights the high productivity of secondary metabolites of Latrunculia sponges and may shed new light on their biosynthetic origin and chemotaxonomy. Full article
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Graphical abstract

Graphical abstract
Full article ">Figure 1
<p>Annotated molecular network of the <span class="html-italic">L. biformis</span> extract. Numbers within the nodes indicate parent ions, and edge thickness represents the cosine similarity between nodes. Green nodes represent discorhabdins and epinardins. Purple nodes represent tsitsikammamines. (<b>A</b>) Discorhabdin and epinardin cluster. (<b>A1</b>) Epinardin sub-cluster. (<b>A2</b>) Monobrominated discorhabdin subcluster. (<b>A3</b>) Dibrominated discorhabdin sub-cluster. (<b>B</b>) Tsitsikammamine cluster.</p>
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<p>Chemical structures of compounds <b>1</b> and <b>2</b>.</p>
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<p>Key two-dimensional (2D) NMR correlations observed for compounds <b>1</b> and <b>2</b>. The COSY (in bold), key H→C HMBC (arrows), and H→H NOE (dashed line).</p>
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<p>(<b>A</b>) Calculated three-dimensional (3D) binding mode of <b>2</b> in the crystallographically determined active site of topoisomerase I (pdb 1T8I) also containing a DNA molecule (coloured in red) with a single strand break. (<b>B</b>) Corresponding 2D ligand interaction diagram showing key interactions of <b>2</b> to topoisomerase I and DNA. (<b>C</b>) Overlay of the binding pose of <b>2</b> (grey) with the original ligand camptothecin (turquoise) indicating similar ligand space occupied by the scaffolds.</p>
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<p>3D binding poses and ligand interaction diagrams of <b>1</b> (<b>A</b>, green) and <b>2</b> (<b>B</b>, grey) in the crystallographically determined active site of indoleamine 2,3-dioxygenase (IDO1) (pdb 6AZW) with key interactions. The binding pocket is shown in a similar orientation, respectively. Ligand docking revealed two different binding poses with <b>1</b> buried deeper in the pocket when compared to <b>2</b>. Noteworthy, similar results were obtained by docking of <b>1</b> and <b>2</b> in IDO1 structure pdb 6AZV (not shown).</p>
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