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24 pages, 9508 KiB  
Article
From High Protection to Lethal Effect: Diverse Outcomes of Immunization Against Invasive Candidiasis with Different Candida albicans Extracellular Vesicles
by Raquel Martínez-López, Gloria Molero, Claudia Marcela Parra-Giraldo, Matías Sebastián Cabeza, Guillermo Castejón, Carmen García-Durán, Luis Felipe Clemente, María Luisa Hernáez, Concha Gil and Lucía Monteoliva
Int. J. Mol. Sci. 2025, 26(1), 244; https://doi.org/10.3390/ijms26010244 (registering DOI) - 30 Dec 2024
Abstract
Extracellular vesicles (EVs) from Candida albicans can elicit immune responses, positioning them as promising acellular vaccine candidates. We characterized EVs from an avirulent C. albicans cell wall mutant (ecm33Δ) and evaluated their protective potential against invasive candidiasis. EVs from the yeast [...] Read more.
Extracellular vesicles (EVs) from Candida albicans can elicit immune responses, positioning them as promising acellular vaccine candidates. We characterized EVs from an avirulent C. albicans cell wall mutant (ecm33Δ) and evaluated their protective potential against invasive candidiasis. EVs from the yeast (YEVs) and hyphal (HEVs) forms of the SC5314 wild-type strain were also tested, yielding high survival rates with SC5314 YEV (91%) and ecm33 YEV immunization (64%). Surprisingly, HEV immunization showed a dual effect, resulting in 36% protection but also causing premature death in some mice. Proteomic analyses revealed distinct profiles among the top 100 proteins in the different EVs, which may explain these effects: a shared core of 50 immunogenic proteins such as Pgk1, Cdc19, and Fba1; unique, relevant immunogenic proteins in SC5314 YEVs; and proteins linked to pathogenesis, like Ece1 in SC5314 HEVs. Sera from SC5314 YEV-immunized mice showed the highest IgG2a titers and moderate IL-17, IFN-γ, and TNF-α levels, indicating the importance of both humoral and cellular responses for protection. These findings highlight the distinct immunogenic properties of C. albicans EVs, suggesting their potential in acellular vaccine development while emphasizing the need to carefully evaluate pathogenic risks associated with certain EVs. Full article
(This article belongs to the Special Issue Fungal Pathogen-Host Interactions)
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<p>NTA analysis of SC5314 YEVs and <span class="html-italic">ecm33</span> YEVs. TEM images showing spherical electron-dense bilayered structures, typical of extracellular vesicles, are provided for visual reference. The X10, X50, and X90 indicate a 10%, 50%, or 90% of EVs, respectively, with the specified size or smaller.</p>
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<p>(<b>a</b>) Functional enrichment analysis for proteins identified in SC5314 YEVs (1219 proteins) and <span class="html-italic">ecm33</span> YEVs (1333 proteins). The word clouds represent enriched terms based on the Fungal Database (CGD GO) analysis. These terms correspond to cellular compartments and are derived from Gene Ontology (GO). The size and color intensity of the terms indicate the significance of the enrichment, with larger and darker terms representing lower <span class="html-italic">p</span>-values. (<b>b</b>) Quantitative comparison of proteins present in EVs from both strains. The volcano plot illustrates proteins with significant differences in abundance between EV types (log2(fold change) vs. −log10(q-value)). Proteins more abundant in SC5314 YEVs or ecm33 YEVs are highlighted in blue and pink, respectively. Additionally, functional enrichment analyses were performed on the differentially abundant protein sets, focusing on “cellular component” (<b>top</b>) and “biological process” (<b>bottom</b>). The red asterisks indicate cellular components or biological processes related to the cell wall or cell surface.</p>
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<p>Vaccination schedule (<b>a</b>) and survival curves (<b>b</b>) of a mouse model of IC, showing the protective effect of immunization with different <span class="html-italic">C. albicans</span> EVs. Mice were immunized with different doses of EVs with adjuvant (Ad) or without adjuvant and subsequently challenged with an intravenous lethal dose of SC5314 (1 × 10<sup>6</sup> cells). Statistical differences between immunization and control groups are marked with an asterisk. * Mantel–Cox test, <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Vaccination schedule (<b>a</b>) and survival curves (<b>b</b>) of a murine model of IC, showing the protective effect achieved with immunization with SC5314 YEVs and <span class="html-italic">ecm33</span> YEVs. Mice were immunized with different doses of EVs with adjuvant (Ad) and subsequently challenged with an intravenous lethal dose of SC5314 (1 × 10<sup>6</sup> cells). Vaccination with live cells (2.5 × 10<sup>6</sup> cells, one dose) of the completely avirulent <span class="html-italic">ecm33</span>Δ mutant was included as a positive vaccination control (<b>a</b>,<b>b</b>). * Mantel–Cox test, <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Vaccination schedule (<b>a</b>) and survival curves (<b>b</b>) of a mouse model of invasive candidiasis, showing the protective effect of immunization with different <span class="html-italic">C. albicans</span> EVs. Mice were immunized with different doses of EVs with adjuvant (Ad) and subsequently challenged with an intravenous lethal dose of SC5314 (5 <span class="html-italic">×</span> 10<sup>5</sup> cells). Mantel–Cox test, * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.005, *** <span class="html-italic">p</span> &lt; 0.0005 (black asterisks represent statistically significant differences between the control group and the different EV-immunized groups. Red asterisks represent statistically significant differences in the protection acquired between the different EV-immunized groups).</p>
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<p>(<b>a</b>) Hierarchical heatmap depicting the relative abundance of each protein across the three different types of EVs, with darker shades of red indicating higher relative abundance (measured by NSAF) (protein names shown represent 1 out of every 22 proteins for clarity). (<b>b</b>) Zoomed-in view on the region of the heatmap with a higher abundance in cell surface proteins in SC5314 YEVs. Proteins described as immunogenic in the Candida Genome Database (CGD) are marked with an asterisk.</p>
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<p>Venn diagram illustrating the top 100 most abundant proteins in each type of extracellular vesicle (EV). Proteins previously reported as immunogenic in other studies are highlighted in bold. Proteins associated with virulence are shaded.</p>
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<p>IgG and IgG2a antibody titers. ELISAs with pooled sera obtained prior to infection from immunized mice with SC5314 YEVs (blue), <span class="html-italic">ecm33</span> YEVs (pink), and SC5314 HEVs (green). Protein samples from SC5314 YEVs, SC5314 HEVs, and total cytoplasmic extracts from the wild-type strain SC5314 were used for detection purposes. Statistically significant differences in antibody titers were observed across all groups compared to the control group. Two-way ANOVA test, ** <span class="html-italic">p</span> &lt; 0.01, **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Cytokine profile for each of the pooled sera obtained after complete immunization with the different EVs (SC5314 YEVs (blue), <span class="html-italic">ecm33</span> YEVs (pink), and SC5314 HEVs (green)) but prior to infection (immunized), and 30 days after infection (surviving). Adjuvant group (control group) received only the adjuvant. Statistically significant differences in cytokine levels were observed across all cases compared to the control group. Two-way ANOVA test, *** <span class="html-italic">p</span> &lt;0.001, **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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14 pages, 5537 KiB  
Article
Synthesis, Characterization, and Investigation of Corona Formation of Dipeptide-Based Nanomaterials
by Emrah Dikici, Burcu Önal Acet, Betül Bozdoğan, Ömür Acet, Inessa Halets-Bui, Dzmitry Shcharbin and Mehmet Odabaşı
Materials 2025, 18(1), 108; https://doi.org/10.3390/ma18010108 (registering DOI) - 30 Dec 2024
Abstract
Peptide-based nanomaterials can be easily functionalized due to their functional groups, as well as being biocompatible, stable under physiological conditions, and nontoxic. Here, diphenylalanineamide-based nanomaterials (FFANMs) were synthesized, decorated with Ca2+ ions to set the surface charge, and characterized for possible use [...] Read more.
Peptide-based nanomaterials can be easily functionalized due to their functional groups, as well as being biocompatible, stable under physiological conditions, and nontoxic. Here, diphenylalanineamide-based nanomaterials (FFANMs) were synthesized, decorated with Ca2+ ions to set the surface charge, and characterized for possible use in gene delivery and drug release studies. FFANMs were characterized by SEM, TEM, dynamic light scattering (DLS), and LC-MS/MS. Corona formation and biocompatible studies were also carried out. Some of the data obtained are as follows: FFANMs have a diameter of approximately 87.93 nm. While the zeta potentials of FFANMs and Ca2+@FFANMs were −20.1 mV and +9.3 mV, respectively, after corona formation with HSA and IgG proteins, they were shifted to −7.6 mV and −3.7 mV, respectively. For gene delivery studies, zeta potentials of Ca2+@FFANMs and DNA interactions were also studied and found to shift to −9.7 mV. Cytotoxicity and biocompatibility studies of NMs were also studied on HeLa and HT29 cell lines, and decreases of about 5% and 10% in viability at the end of 24 h and 72 h incubation times were found. We think that the results obtained from this study will assist the groups working in the relevant field. Full article
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<p>SEM images of FFANMs exposed to the cross-linker for different periods of time and the size–percentage distribution graphs.</p>
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<p>SEM (<b>A</b>) and TEM (<b>B</b>) images of FFA NMs.</p>
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<p>Result of the mass spectrometry (MS) analysis of FFA monomers (<b>A</b>) and FFANMs (<b>B</b>).</p>
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<p>A model for the possible interaction between FFANMs and Ca<sup>2+</sup> ions.</p>
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<p>A putative representation of the corona formation of NMs with those molecules.</p>
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<p>TEM analysis of corona structures formed after the interactions of Ca<sup>2+</sup>@FFANMs with HSA (<b>a</b>), IgG (<b>b</b>), and DNA (<b>c</b>).</p>
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<p>Viability percentages of cells after incubation with different concentrations of FFANM and Ca<sup>2+</sup>@FFANMs: 24 h (<b>A</b>) and 72 h (<b>B</b>) for HeLa cells; 24 h (<b>C</b>) and 72 h (<b>D</b>) for HT29 cells. Culture medium: DMEM; NM concentration range: 18–36 µg/mL; incubation temperature: 37 °C.</p>
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13 pages, 444 KiB  
Article
Food Protein-Induced Allergic Proctocolitis: Real-World Experience from an Italian Cohort
by Simona Barni, Benedetta Pessina, Lorenzo Fioretti, Luca Scarallo, Andrea Di Siena, Matteo Bramuzzo, Giulia Liccioli, Lucrezia Sarti, Leonardo Tomei, Mattia Giovannini, Sara Renzo and Francesca Mori
Nutrients 2025, 17(1), 98; https://doi.org/10.3390/nu17010098 (registering DOI) - 30 Dec 2024
Viewed by 125
Abstract
Background/Objectives: Food protein-induced allergic proctocolitis (FPIAP) is a non-IgE-mediated food allergy, usually presenting as bloody stools in breastfed, well-appearing, and regularly growing infants. The aim of our study was to describe the clinical features of Italian infants affected by FPIAP and their [...] Read more.
Background/Objectives: Food protein-induced allergic proctocolitis (FPIAP) is a non-IgE-mediated food allergy, usually presenting as bloody stools in breastfed, well-appearing, and regularly growing infants. The aim of our study was to describe the clinical features of Italian infants affected by FPIAP and their management and natural history in a real-life setting. Methods: A retrospective, observational study was performed at two tertiary pediatric hospitals (Florence and Trieste), including FPIAP-diagnosed infants between 2012 and 2022. Results: Most of the 100 enrolled patients were breastfed (68.0%), and the majority of those who underwent diagnostic tests (n = 51) showed normal hemoglobin and total IgE levels. A maternal elimination diet was performed in 69.0%, mostly for milk only, but 40.6% underwent multiple elimination diets. The remission rate was high both in breastfed infants (76.8%) and in those who received extensively hydrolyzed formula (81.8%). Nine subjects were left on a free diet, but six were lost at follow-up. The median time of complete remission was 30 days (IQR 14–60). Culprit food reintroduction was tolerated at a median age of 8 months (IQR 6–11), in ladder modality (for hen’s egg and cow’s milk) in 61.7%. Nine patients relapsed (14.3%) upon reintroduction with no associated variables identified at the regression analysis. The relapse rate was slightly higher when trigger food reintroduction was attempted > 12 months (16.7%) versus <12 months (13.0%). Conclusions: In our population, FPIAP had, as expected, a benign evolution. The early reintroduction of the suspect food in a gradual manner for cow’s milk and hen’s egg leads to good tolerance within the first year in most patients, avoiding unnecessary elimination diets. Full article
(This article belongs to the Section Pediatric Nutrition)
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<p>Diagram illustrating the study design and results.</p>
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15 pages, 5521 KiB  
Article
Cell Wall Protein 2 as a Vaccine Candidate Protects Mice Against Clostridioides difficile Infection
by Shaohui Wang, Joshua Heuler, Jessica Bullock, Junling Qin, Soumyadeep Chakraborty, Agbendeh Lubem Nathaniel, Shifeng Wang and Xingmin Sun
Vaccines 2025, 13(1), 21; https://doi.org/10.3390/vaccines13010021 (registering DOI) - 30 Dec 2024
Viewed by 147
Abstract
Background/Objectives: Clostridioides difficile is a Gram-positive, spore-forming enteric pathogen that causes intestinal disorders, including inflammation and diarrhea, primarily through toxin production. Standard treatment options for C. difficile infection (CDI) involve a limited selection of antibiotics that are not fully effective, leading to high [...] Read more.
Background/Objectives: Clostridioides difficile is a Gram-positive, spore-forming enteric pathogen that causes intestinal disorders, including inflammation and diarrhea, primarily through toxin production. Standard treatment options for C. difficile infection (CDI) involve a limited selection of antibiotics that are not fully effective, leading to high recurrence rates. Vaccination presents a promising strategy for preventing both CDI and its recurrence. Cell wall protein 2 (Cwp2), a highly immunogenic and abundant surface-exposed C. difficile cell wall protein, plays an important role in the bacterium’s adherence in vitro. In this study, we aimed to analyze the homology and immunogenicity of Cwp2 and its protection efficacy as a vaccine candidate against CDI in mice. Methods: we conducted in silico analyses to assess the homology and immunogenicity of Cwp2, and we evaluated its potential as a vaccine candidate against CDI using a mouse model of immunization and infection. Results: Our in silico analyses predicted the immunogenic region (functional domain) of Cwp2 and revealed its high homology among various toxinotypes and ribotypes (R.T.s) or sequence types (S.T.s). Immunizations of mice with the Cwp2 functional domain (Cwp2_A) induced potent IgG/A antibody responses against Cwp2_A, protected mice from CDI, and reduced C. difficile spore and toxin levels in feces post-infection. Additionally, anti-Cwp2_A sera inhibited the binding of C. difficile vegetative cells to HCT8 cells. Conclusions: Our report demonstrates for the first time the potential of Cwp2_A as an effective vaccine candidate against CDI in mice. Full article
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<p><b>Domain architecture of cell wall protein 2 (Cwp2) (WP_009891054.1) from <span class="html-italic">C. difficile</span> R20291.</b> The signal peptide (SP) is followed by the functional region, which includes domain 1 (D1), domain 2 (D2), and domain 3 (D3); D2 is connected to D3 via a strand of 13 aa in D1. The cell wall binding domain (CWB) has 3 repeated regions, CWB1, CWB2, and CWB3, as indicated in UniProt. The schematic representation of the domain architecture was developed in DOG 2.0.</p>
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<p><b>Predicted immunogenic regions (in yellow) of Cwp2.</b> B cell epitopes of Cwp2 were predicted using the BepiPred-2.0 server (<a href="https://www.iedb.org/" target="_blank">https://www.iedb.org/</a>; accessed on 6 May 2023). The residues with scores above the threshold (default value is 0.5) are predicted to be part of an epitope and are colored in yellow on the graph (where the Y-axis depicts residue scores and the X-axis depicts residue positions in the sequence).</p>
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<p><b>Cwp2 phylogeny.</b> Amino acid sequences of Cwp2 were aligned with the MUSCLE algorithm in MegaX before computing a maximum likelihood tree with 100 bootstrap replicates (bootstrap values &gt;50 are displayed). Scale bars indicate 0.010 substitutions per site. The ribotype (or sequence type) of each source strain is displayed adjacent to the strain name. Ribotypes with multiple representatives have multicolored labels, while black labels indicate ribotypes with only one representative on the tree. Toxinotypes for each strain are indicated to the right of the ribotype for each strain.</p>
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<p><b>Cwp2 homology.</b> Cwp2 sequences were aligned with MUSCLE and visualized with Jalview. The Jalview-calculated conservation scores are reported below the alignment from 0 (no conservation) to 11 (identical sequences). The ribotype of each source strain is displayed adjacent to the strain name and are color-coded for easier identification. The conserved amino acid sequences are highlighted in blue.</p>
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<p>(<b>A</b>) Expression and purification of Cwp2_A. Cwp2_A was cloned in <span class="html-italic">E. Coli</span> BL21, and the protein was purified and analyzed on SDS-PAGE. (<b>B</b>) Immunization with Cwp2_A via the intraperitoneal (i.p.) route elicited anti-Cwp2_A antibody responses. Groups of mice (<span class="html-italic">n</span> = 5–8) were immunized three times with 10 µg or 20 µg of Cwp2_A with aluminum. In (<b>C</b>–<b>E</b>), 20 µg of protein was used. Anti-Cwp2_A IgG/IgA titers in sera and feces were determined using an ELISA analysis. Data are presented as the mean ± SEM (* <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; ns, not significant; 2nd and 3rd IM vs. 1st IM in (<b>C</b>–<b>E</b>)).</p>
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<p><b>Immunization with Cwp2_A provides mice significant protection against infection with <span class="html-italic">C. difficile</span>.</b> Immunized mice or controls (non-immunized mice) (<span class="html-italic">n</span> = 10) were challenged with <span class="html-italic">C. difficile</span> R20291 spores (10<sup>6</sup>/mouse). Survivals (<b>A</b>), weight changes (<b>B</b>), and diarrhea percentages (<b>C</b>) are shown. Data are presented as the mean ± SEM (ns, not significant; * <span class="html-italic">p</span> &lt; 0.05; in (B), immunization with 20 µg vs. control).</p>
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<p><b>Immunization of with Cwp2_A reduces <span class="html-italic">C. difficile</span> spore and toxin levels in feces of <span class="html-italic">C. difficile</span> R20291-infected mice.</b> <span class="html-italic">C. difficile</span> toxin (<b>A</b>,<b>B</b>) and spore (<b>C</b>) levels in feces were determined. Data are presented as the mean ± SEM. (* <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01 versus control).</p>
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<p><b>Anti-Cwp2_A serum inhibits adhesion of <span class="html-italic">C. difficile</span> to HCT8 cells.</b> The adhesion assay was performed as described in the methods. Experiments were independently repeated three times, and data are presented as the mean ± SEM (* <span class="html-italic">p</span> &lt; 0.05 vs. treatment with pre-immune serum).</p>
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<p><b>T cell responses.</b> Splenocytes from immunized (<span class="html-italic">n</span> = 3–4) and unimmunized (<span class="html-italic">n</span> = 4) mice were isolated 13 days after the second immunization with Cwp2_A and stimulated with Cwp2_A at 10 µg/mL for 72 h (<b>A</b>,<b>B</b>) or 6 h (<b>C</b>). The proliferative responses of CD4+ (<b>A</b>) and CD8+ (<b>B</b>) T cells were assayed by staining with appropriate antibodies and were analyzed by flow cytometry. (<b>C</b>) IL-17, IFN-γ, and TNF-α expression in the spleen cells was determined by qPCR processing. The y-axis value indicates the expression ratio relative to GAPDH. Data are presented as the mean ± SEM (N = 3, * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, ns, not significant).</p>
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12 pages, 388 KiB  
Article
Understanding Interpersonal Influences on Maternal Health Service Utilization at Community Health Centers: A Mixed-Methods Study in Indonesia
by Herwansyah Herwansyah, Katarzyna Czabanowska, Stavroula Kalaitzi and Peter Schröder-Bäck
Healthcare 2025, 13(1), 42; https://doi.org/10.3390/healthcare13010042 (registering DOI) - 30 Dec 2024
Viewed by 113
Abstract
Background/Objective: The utilization of maternal health services at the primary healthcare level is still considered an effective approach despite the critical role in improving maternal health outcomes. The study aimed to assess the influence of sociodemographic characteristics and interpersonal support on the [...] Read more.
Background/Objective: The utilization of maternal health services at the primary healthcare level is still considered an effective approach despite the critical role in improving maternal health outcomes. The study aimed to assess the influence of sociodemographic characteristics and interpersonal support on the use of maternal health services in three regions of the Province of Jambi, Indonesia. Methods: Using a mixed-methods sequential explanatory design, a quantitative survey of 432 women and qualitative focus group discussions with nine families were conducted. Quantitative data were analyzed using bivariate analysis, while the qualitative data were examined through conventional content analysis. Results: The research results show no significant association between sociodemographic factors (education, employment, residence) and the use of maternal health services for antenatal care and delivery. Direct support, such as accompaniment by spouses, and indirect support, including emotional encouragement and shared knowledge, were pivotal in influencing women’s decisions to seek care. Conclusions: Targeted interventions focusing on improving social support, addressing service accessibility barriers, and raising awareness about the benefits of community health centers are essential to enhancing maternal health outcomes. Policymakers and healthcare providers should integrate family-centered strategies to ensure women receive adequate maternal healthcare. Full article
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<p>Explanatory sequential design in a mixed-methods study.</p>
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24 pages, 10950 KiB  
Article
Zenith Tropospheric Delay Forecasting in the European Region Using the Informer–Long Short-Term Memory Networks Hybrid Prediction Model
by Zhengdao Yuan, Xu Lin, Yashi Xu, Jie Zhao, Nage Du, Xiaolong Cai and Mengkui Li
Atmosphere 2025, 16(1), 31; https://doi.org/10.3390/atmos16010031 (registering DOI) - 29 Dec 2024
Viewed by 231
Abstract
Zenith tropospheric delay (ZTD) is a significant atmospheric error that impacts the Global Navigation Satellite System (GNSS). Developing a high-precision, long-term forecasting model for ZTD can provide valuable insights into the overall trends of predicted ZTD, which is essential for improving GNSS positioning [...] Read more.
Zenith tropospheric delay (ZTD) is a significant atmospheric error that impacts the Global Navigation Satellite System (GNSS). Developing a high-precision, long-term forecasting model for ZTD can provide valuable insights into the overall trends of predicted ZTD, which is essential for improving GNSS positioning and analyzing changes in regional climate and water vapor. To address the challenges of incomplete information extraction and gradient explosion in a single neural network when forecasting ZTD long-term, this study introduces an Informer–LSTM Hybrid Prediction Model. This model employs a parallel ensemble learning strategy that combines the strengths of both the Informer and LSTM networks to extract features from ZTD data. The Informer model is effective at capturing the periodicity and long-term trends within the ZTD data, while the LSTM model excels at understanding short-term dependencies and dynamic changes. By merging the features extracted by both models, the prediction capabilities of each can complement one another, allowing for a more comprehensive analysis of the characteristics present in ZTD data. In our research, we utilized ERA5-derived ZTD data from 11 International GNSS Service (IGS) stations in Europe to interpolate the missing portions of GNSS-derived ZTD. We then employed this interpolated data from 2016 to 2020, along with an Informer–LSTM Hybrid Prediction Model, to develop a long-term prediction model for ZTD with a prediction duration of one year. Our numerical results demonstrate that the proposed model outperforms several comparative models, including the LSTM–Informer based on a serial ensemble learning model, as well as the Informer, Transformer, LSTM, and GPT3 empirical ZTD models. The performance metrics indicate a root mean square error (RMSE) of 1.91 cm, a mean absolute error (MAE) of 1.45 cm, a mean absolute percentage error (MAPE) of 0.60, and a correlation coefficient (R) of 0.916. Spatial distribution analysis of the accuracy metrics showed that predictive accuracy was higher in high-latitude regions compared to low-latitude areas, with inland regions demonstrating better performance than those near the ocean. This study introduced a novel methodology for high-precision ZTD modeling, which is significant for improving accurate GNSS positioning and detecting water vapor content. Full article
(This article belongs to the Special Issue Feature Papers in Atmospheric Techniques, Instruments, and Modeling)
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<p>The location of IGS stations used in this study.</p>
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<p>Comparison of the box plots of ZTD before and after interpolation for each IGS station used in this study. The line in the middle of the boxes represents the mean level of the data. In contrast, the upper and lower edges of the boxes correspond to the upper and lower quartiles, respectively, indicating the variability of the data. Points outside the boxes represent outliers in the data.</p>
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<p>GNSS-interpolation ZTD from 2016 to 2020 for the selected IGS stations in this study. Panels (<b>a</b>), (<b>b</b>), (<b>c</b>), and (<b>d</b>) represent the stations KIRU, GANP, POLV and TLSG, respectively.</p>
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<p>The architecture of the LSTM model.</p>
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<p>The architecture of the Informer model.</p>
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<p>The architecture of the Informer–LSTM Hybrid Prediction Model.</p>
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<p>Flowchart of Informer–LSTM Hybrid ZTD prediction model.</p>
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<p>Comparison of ZTD prediction accuracy of different models. The figure uses colors to indicate the density of data points. It mainly shows the distribution of each model’s predicted and true values on a two-dimensional plane.</p>
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<p>Comparison of prediction accuracy indexes of different ZTD prediction models for each station. (<b>a</b>) RMSE, (<b>b</b>) MAE.</p>
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<p>Comparison of the prediction results of the Informer–LSTM Hybrid ZTD Prediction Model with the GNSS interpolation ZTD. The horizontal coordinates represent the predicted four moments of each day in 2020 (0:00, 6:00, 12:00, and 18:00), and the vertical coordinates represent the ZTD values. Panels (<b>a</b>), (<b>b</b>), (<b>c</b>), and (<b>d</b>) represent the stations KIRU, GRAZ, METG and MORP, respectively.</p>
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<p>Spatial distribution of forecast accuracy metrics: (<b>a</b>) RMSE, (<b>b</b>) MAE, (<b>c</b>) MAPE, (<b>d</b>) R.</p>
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17 pages, 2735 KiB  
Article
Effects of Stocking Density on Fatty Acid and Amino Acid Composition in Muscle, Serum Cortisol, Stress and Immune Response in Large Yellow Croaker (Larimichthys crocea)
by Youbin Yu, Liang Wang, Wenyun Huang, Duo Yu, Qiaoxuan Sun and Mingcao Cui
J. Mar. Sci. Eng. 2025, 13(1), 36; https://doi.org/10.3390/jmse13010036 (registering DOI) - 29 Dec 2024
Viewed by 285
Abstract
To explore the effect of density on large yellow croaker (Larimichthys crocea) under intensive aquaculture conditions and determine the appropriate culturing density, this study investigate the effects of different stocking densities on the nutritional composition, stress, and immune levels of large [...] Read more.
To explore the effect of density on large yellow croaker (Larimichthys crocea) under intensive aquaculture conditions and determine the appropriate culturing density, this study investigate the effects of different stocking densities on the nutritional composition, stress, and immune levels of large yellow croaker. Through a long-term aquaculture experiment, conducted under flow-through conditions of intensive aquaculture, three initial density groups were set: a low density group [LD], 4.92 kg/m3; a medium density group [MD], 7.56 kg/m3; and a high density group [HD], 10.08 kg/m3, for a 150-day rearing trial. Large yellow croaker were fed to satiation twice daily (6:00, 17:00). At the end of this trial, the final densities were 10.38 ± 0.50, 14.41 ± 1.06, and 18.71 ± 0.99 kg/m3 in the LD, MD, and HD groups, respectively. The results showed that the growth performances were adversely influenced by a high stocking density. Levels of cortisol in serum, superoxide dismutase (SOD) and catalase (CAT) in liver, Na+-K+ ATPase and Na+-K+ ATPase gene in gills, and heat shock protein (HSP70/90) genes and glutathione S-transferase (GST) genes in the liver significantly increased under HD treatment. Results of immune response analyses showed that there was a clear decrease in immunoglobulin M (IgM), complement component 4 (C4), and lysozyme (LZM) in serum, lysozyme (LZM) genes, tumor necrosis factor-alpha (TNF-α) genes and interleukin-1β (IL-1β) genes in the head kidney of large yellow croakers reared in the HD group. An obvious increase in free amino acids and fatty acids in the muscle of large yellow croakers reared in HD group was also observed. Overall, this study showed that the optimal final culturing density of large yellow croaker under flow-through systems should be between 14.41 kg/m3 and 18.71 kg/m3 to improve aquaculture efficiency and product quality. Full article
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<p>Weight gain rate (WGR) of large yellow croaker under different stocking densities. LD, low density; MD, medium density; HD, high density. Data are means ± SD (<span class="html-italic">n</span> = 3). Significant differences (<span class="html-italic">p</span> &lt; 0.05) among treatments are indicated by different small letters.</p>
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<p>Effects of stocking density on Na<sup>+</sup>-K<sup>+</sup> ATPase activity (<b>A</b>) and gene (<b>B</b>) expression in gills tissue of large yellow croaker. LD, low density; MD, medium density; HD, high density. A different lowercase letter at the same sampling time indicates significant differences among the three stocking densities (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effects of stocking density on antioxidative status in serum and liver of large yellow croaker. LD, low density; MD, medium density; HD, high density. (<b>A</b>), alkaline phosphatase (AKP); (<b>B</b>), catalase (CAT); (<b>C</b>), cortisol (COR); (<b>D</b>), reduced glutathione (GSH); (<b>E</b>), malondialdehyde (MDA); (<b>F</b>), superoxide dismutase (SOD). A different lowercase letter at the same sampling time indicates significant differences among the three stocking densities (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effects of stocking density on immune enzymes activity in serum of large yellow croaker. LD, low density; MD, medium density; HD, high density. (<b>A</b>), Complement 3 (C3); (<b>B</b>), Complement 4 (C4); (<b>C</b>), ImmunoglobulinM (IGM); (<b>D</b>), lysozyme (LZM). A different lowercase letter at the same sampling time indicates significant differences among the three stocking densities (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effects of stocking density on expression levels of stress-regulating genes in liver of large yellow croaker. LD, low density; MD, medium density; HD, high density. (<b>A</b>), Glutathione S-transferase mRNA (GST mRNA); (<b>B</b>), Metallothionein MT mRNA (MT mRNA); (<b>C</b>), Heat shock protein 70 mRNA (HSP70 mRNA); (<b>D</b>), Heat shock protein 90 mRNA (HSP90 mRNA). A different lowercase letter at the same sampling time indicates significant differences among the three stocking densities (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effects of stocking density on expression levels of immune-regulating genes in head kidney of large yellow croakers. LD, low density; MD, medium density; HD, high density. (<b>A</b>), interleukin-1β mRNA (IL-1βmRNA); (<b>B</b>), lysozyme mRNA (LZM mRNA); (<b>C</b>), Toll-like receptor 3 mRNA (TLR-3 mRNA); (<b>D</b>), tumor necrosis factor mRNA (TNF-αmRNA). A different lowercase letter at the same sampling time indicates significant differences among the three stocking densities (<span class="html-italic">p</span> &lt; 0.05).</p>
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15 pages, 898 KiB  
Review
Small Interfering RNA in Kidney Diseases: Promises and Limitations
by Attilio Losito and Giuseppe Solano
Kidney Dial. 2025, 5(1), 1; https://doi.org/10.3390/kidneydial5010001 (registering DOI) - 29 Dec 2024
Viewed by 171
Abstract
Small interfering RNAs (siRNAs) are short, double-stranded RNA molecules that play a crucial role in the regulation of gene expression, particularly through a natural process called RNA interference (RNAi). Their discovery, about 25 years ago, paved the way for a whole series of [...] Read more.
Small interfering RNAs (siRNAs) are short, double-stranded RNA molecules that play a crucial role in the regulation of gene expression, particularly through a natural process called RNA interference (RNAi). Their discovery, about 25 years ago, paved the way for a whole series of research leading to synthetic molecules. The gene silencing potential of these siRNAs was initially oriented towards diseases resulting from genetic dysfunctions. This led to the development of the first synthetic siRNAs approved for human use in hereditary transthyretin amyloidosis. Subsequently, the field of application expanded beyond the confines of genetic diseases. The refinement of pharmacological techniques has led to the synthesis of a variety of siRNAs capable of blocking the production of individual proteins responsible for various disease conditions, thus expanding their field of therapeutic application. The kidney has also been affected by this new therapeutic tool, largely indirectly but also, with some difficulty, directly. The structural complexity of the kidney has made the search for siRNAs targeting its individual components very challenging. Nevertheless, the first results of the application of this new therapeutic technology to the kidney are beginning to be seen in experimental animals and in humans. siRNAs have been approved for the treatment of amyloidosis with patisiran and oxalosis with lumasiran and nedosiran. Studies are ongoing for the use of siRNAs as anti-complement drugs in IgA nephropathy, as angiotensinogen inhibitors in hypertension, or against some mediators of acute kidney injury. In this review, the biological mechanisms underlying the use of siRNAs are briefly exposed. The results of the therapeutic application of RNA interference to the kidney and its diseases are also analyzed and discussed. Full article
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<p>Molecular mechanism of siRNA. See text for explanation.</p>
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<p>Schematic representation of the metabolic pathway of glyoxylate in the liver and the mechanism of action of lumasiran and nedosiran.</p>
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22 pages, 1359 KiB  
Article
Identification of B Cell Subpopulations with Pro- and Anti-Tumorigenic Properties in an Immunocompetent Mouse Model of Head and Neck Squamous Cell Carcinoma
by Michael Sonntag, Sandra Stanojevic, Simon Laban, Patrick J. Schuler, Thomas K. Hoffmann and Cornelia Brunner
Cells 2025, 14(1), 20; https://doi.org/10.3390/cells14010020 (registering DOI) - 29 Dec 2024
Viewed by 167
Abstract
Due to their high developmental diversity and different regulatory and functional roles, B cell subpopulations can promote or inhibit tumor growth. An orthotopic murine HNSCC model was applied to investigate the B cell composition and function in HNSCCs. Using flow cytometry approaches, cells [...] Read more.
Due to their high developmental diversity and different regulatory and functional roles, B cell subpopulations can promote or inhibit tumor growth. An orthotopic murine HNSCC model was applied to investigate the B cell composition and function in HNSCCs. Using flow cytometry approaches, cells from the spleen, lymph nodes and tumors were analyzed. Additionally, immunoglobulin (Ig) levels post-tumor induction were tracked via enzyme-linked immunosorbent assays (ELISA). Following tumor induction, GCs, as well as increasing numbers of GL7+CD95+ GC B cells in the spleen and tumor tissues, were detected. In parallel, we observed CD39+CD73+ B cells in tumors and spleens of tumor-bearing mice. Notably, CD39+CD73+ expression was primarily detected on MZ B cells and to a lesser extent on follicular (FO) and non-follicular, newly formed (NF) B cells, supposing an immunosuppressive function of MZ B cells in the TME. Parallel to increased MZ B cell numbers in secondary lymphoid organs (SLOs) as well as in the tumor tissue, IgM antibody (Ab) levels rose continuously. In contrast, IgG1, IgG2, and IgG3 levels increased at later time points. Understanding the complex interactions between B cell subsets and the TME could lead to new strategies for enhancing the treatment and prognosis of HNSCC patients. Full article
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<p>Increased B cell number in the spleen, draining cervical lymph nodes and tumor tissue during tumor progression in orthotopic HNSCC. (<b>A</b>) An absolute number of B220<sup>+</sup> B cells in spleen tissue (<b>A</b>) in cervical lymph nodes (<b>B</b>) on days 0, 7, 14, and 21 was assessed by flow cytometry comparing the control group (blue point) and a group of tumor-bearing mice (green point). (<b>C</b>) The absolute number of B220<sup>+</sup> B cells in tumor tissue during observation time on days 14 and 21. Each point represents data from a single animal. Data in the graphs are shown as means ± SD (n ≥ 3 mice per control group and n ≥ 4 mice per group for tumor-bearing mice; differences in group size due to discontinuation ahead of schedule). Data are merged from at least two independent experiments. <span class="html-italic">p</span>-values were determined using a two-tailed Student’s <span class="html-italic">t</span>-test or Mann-Whitney-U test. Marked <span class="html-italic">p</span>-values can be considered statistically significant, * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Increased B cell activation, GC formation and plasmablast generation within the time course of tumor formation in spleen, lymph nodes and tumor tissue. (<b>A</b>–<b>C</b>) Absolute number of B220<sup>+</sup>GL7<sup>+</sup>CD95<sup>+</sup> GC B cells (<b>A</b>), B220<sup>+</sup>CD69<sup>+</sup> activated B-cells (<b>B</b>) and B220<sup>+</sup>CD138<sup>+</sup> plasmablast B cells (<b>C</b>) in spleen on days 0, 7, 14, and day 21 assessed by flow cytometry comparing control group (blue point) and group of tumor-bearing mice (green point). (<b>D</b>) An absolute number of B220<sup>+</sup>GL7<sup>+</sup>CD95<sup>+</sup> GC B cells in cervical lymph nodes during observation time on days 0, 7, 14, and 21 was assessed by flow cytometry comparing the control group (blue point) and a group of tumor-bearing mice (green point). (<b>E</b>,<b>F</b>) An absolute number of B220<sup>+</sup>GL7<sup>+</sup>CD95<sup>+</sup> GC B cells (<b>E</b>) and B220<sup>+</sup>CD138<sup>+</sup> plasmablasts (<b>F</b>) in tumor tissue during observation time on days 14 and 21. Each point represents data from a single mouse. Data in the graphs are shown as means ± SD (n = 3 mice per control group; n = 4 for tumor-bearing mice groups, differences in group size due to discontinuation ahead of schedule). Data are merged from at least two independent experiments. <span class="html-italic">p</span>-values were determined using a two-tailed Student’s t-test or Mann-Whitney-U test. Marked <span class="html-italic">p</span>-values can be considered statistically significant, * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Tumor-induced germinal center (GC) reaction correlates with the appearance of switched immunoglobulins (Igs) in the serum of tumor-bearing mice of orthotopic head and neck squamous cell carcinoma (HNSCC). A statistical representation of the concentration of IgG1—antibody (Ab) (<b>A</b>), IgG2a—Ab (<b>B</b>), IgG2b—Ab (<b>C</b>) and IgG3—Ab (<b>D</b>) on days 0, 7, 14, and 21 assessed by Enzyme-Linked Immunosorbent Assay (ELISA) comparing control group (blue point) and a group of tumor-bearing mice (green point). Data in the graphs are shown as means ± SD (n = 6 mice per control group, n = 23 for tumor-bearing mice groups, differences in group size due to death due to tumor progress). Data are merged from at least two independent experiments. <span class="html-italic">p</span>-values were determined using a two-tailed Student’s <span class="html-italic">t</span>-test or Mann-Whitney-U test. Marked <span class="html-italic">p</span>-values can be considered statistically significant, * <span class="html-italic">p</span> &lt; 0.05, *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Increased MZ B cell population in spleen, draining lymph nodes and tumor tissue during tumor progression is paralleled with increased levels of serum IgM in tumor-bearing mice of orthotopic head and neck squamous cell carcinoma (HNSCC). An absolute number of newly formed B cells (NF), follicular B cells (FO) and MZ B cells in spleen tissue (<b>A</b>), in cervical lymph nodes (<b>B</b>) on days 0, 7, 14, and 21 assessed by flow cytometry comparing control group (blue point) and group of tumor-bearing mice (green point). (<b>C</b>) The absolute number of B220<sup>+</sup> B cells in tumor tissue during observation time on days 14 and 21. (<b>D</b>) The concentration of IgM on days 0, 7, 14, and day 21 was assessed by ELISA, comparing the control group (blue point) and the group of tumor-bearing mice (green point). Each point represents data from a single animal. Data in the graphs are shown as means ± SD (n ≥ 3 mice per control group; n ≥ 3 for tumor-bearing mice groups, differences in group size due to discontinuation ahead of schedule). Data are merged from at least two independent experiments. <span class="html-italic">p</span>-values were determined using a two-tailed Student’s t-test or Mann-Whitney-U test. Marked <span class="html-italic">p</span>-values can be considered statistically significant, * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01 and **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Increased B cell-mediated potential of Ado generation during tumorigenesis in orthotopic HNSCC. (<b>A</b>) An absolute number of splenic or (<b>B</b>) cervical lymph node derived B220<sup>+</sup>CD39<sup>+</sup>CD73<sup>+</sup> B cells, able to generate Ado. (<b>C</b>) The absolute number of splenic CD39<sup>+</sup>CD73<sup>+</sup> NF, FO, MZ B cells on days 0, 7, 14, and 21 were assessed by flow cytometry comparing the control group (blue, yellow, white points) and a group of tumor-bearing mice (green, red, black points). (<b>D</b>) Absolute number of B220<sup>+</sup>CD39<sup>+</sup>CD73<sup>+</sup> B cells, able to generate Ado, (<b>E</b>) GC B cells, able to generate Ado (B220<sup>+</sup>CD39<sup>+</sup>CD73<sup>+</sup>CD95<sup>+</sup>GL7<sup>+)</sup> and (<b>F</b>) CD39<sup>+</sup>CD73<sup>+</sup> NF, FO, MZ B in tumor tissue during observation time on day 14 and day 21. Each point represents data from a single animal. Data in the graphs are shown as means ± SD (n ≥ 3 mice per control group; n ≥ 4 for tumor-bearing mice groups, differences in group size due to discontinuation ahead of schedule). Data are merged from at least two independent experiments. <span class="html-italic">p</span>-values were determined using a two-tailed Student’s t-test or Mann-Whitney-U test. Marked <span class="html-italic">p</span>-values can be considered statistically significant, * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, and **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Gating strategy for the detection of B cell subpopulation in the spleen, lymph nodes and tumor tissue.</p>
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21 pages, 9317 KiB  
Article
Dietary Capsaicin Supplementation Mitigates Calving-Induced Stress and Enhances Antioxidant Capacity, Immune Function, and Gut Microbiota in Periparturient Dairy Cows
by Hangfan Li, Zibin Wu, Baisheng Yu, Jinyuan Chen, Chuang Yang, Yongqing Guo and Baoli Sun
Antioxidants 2025, 14(1), 28; https://doi.org/10.3390/antiox14010028 (registering DOI) - 29 Dec 2024
Viewed by 314
Abstract
This study investigated the effects of dietary capsaicin supplementation on antioxidant capacity, immune function, and gut microbiota in periparturient dairy cows. Twenty Holstein cows with an average parity of 2.5 ± 0.76, milk production of 31.30 ± 2.39 kg, and 36.10 ± 2.38 [...] Read more.
This study investigated the effects of dietary capsaicin supplementation on antioxidant capacity, immune function, and gut microbiota in periparturient dairy cows. Twenty Holstein cows with an average parity of 2.5 ± 0.76, milk production of 31.30 ± 2.39 kg, and 36.10 ± 2.38 days to calving were randomly assigned to either a control group fed a basal diet or a treatment group supplemented with 1.2 g/head/day of capsaicin. The supplementation was administered during an evaluation period spanning from 28 days before delivery to 21 days after delivery using a randomized block experimental design. Results showed that capsaicin significantly reduced milk somatic cell count and pro-inflammatory cytokines (TNF-α, IL-1β, and IL-6) while enhancing serum antioxidant enzymes (SOD, GSH-Px, and CAT) and immunoglobulin levels (IgG, IgA, and IgM). Moreover, capsaicin altered gut microbiota composition, increasing the relative abundance of beneficial genera. These findings suggest that dietary capsaicin supplementation during the transition period improves lactation performance and supports immune function, as well as alleviates oxidative stress. This study highlights the potential of capsaicin as a practical dietary strategy for enhancing productivity in dairy farming. Full article
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<p>Temperature–humidity index (THI) of the cowshed during the experiment.</p>
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<p>Effect of adding capsaicin to feed on the RR and RT of periparturient cows. Panel (<b>a</b>) shows the changes in rectal temperature over time, where a significant difference between the two groups is observed. Panel (<b>b</b>) describes the variation in respiratory rate, showing trends over time for both groups. * Statistical significance is indicated by asterisks (*). <span class="html-italic">p</span> &lt; 0.05 denotes significant differences between groups at the same time point.</p>
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<p>Effect of adding CAP to feed on milk production in cows. * Statistical significance is indicated by asterisks (*). <span class="html-italic">p</span> &lt; 0.05 denotes significant differences between groups at the same time point.</p>
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<p>The Impact of CAP on the intestinal microbiota of periparturient cows: (<b>a</b>) Venn diagram showing shared and unique operational taxonomic units (OTUs) at 97% similarity level in the intestinal microbiota, (<b>b</b>) rarefaction curve of alpha diversity, (<b>c</b>) rank abundance curve, (<b>d</b>) goods coverage, (<b>e</b>) observed species, (<b>f</b>) Chao1 index, (<b>g</b>) ACE index, (<b>h</b>) Shannon index, (<b>i</b>) Simpson index. * <span class="html-italic">p</span> &lt; 0.05, <sup>NS</sup> <span class="html-italic">p</span> &gt; 0.05. C7, postpartum 7-day control group; T7, postpartum 7-day CAP group; C21, postpartum 21-day control group; T21, postpartum 21-day CAP group.</p>
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<p>Effect of CAP on the diversity of microbiota β in fecal feces of perinatal dairy cows: (<b>a</b>) the (non-metric) multidimensional scaling (NMDS), (<b>b</b>) the principal coordinates analysis (PCoA). Each point in the graph represents a sample.</p>
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<p>Effect of CAP on the composition of microbial flora in fecal feces of perinatal dairy cows (gate level): (<b>a</b>) relative abundance of microbiota at the phylum level, (<b>b</b>) differential microbiota map of fecal microorganisms of perinatal cows on the 7th day, (<b>c</b>) differential microbiota of perinatal dairy cows on the 21st day. T7” and “T21” refer to treatment group samples collected at 7 and 21 days postpartum, respectively. Similarly, “C7” and “C21” refer to control group samples collected at 7 and 21 days postpartum, respectively.</p>
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<p>Effect of CAP on the composition of microflora in fecal feces of perinatal dairy cows (genus level): (<b>a</b>) relative abundance of microbiota at the genus level, (<b>b</b>) differential microbiota of fecal microorganisms in perinatal cows 7 days postpartum, (<b>c</b>) 21 days postpartum differential microbiota map of perinatal dairy cow microorganisms. “T7” and “T21” refer to treatment group samples collected at 7 and 21 days postpartum, respectively. Similarly, “C7” and “C21” refer to control group samples collected at 7 and 21 days postpartum, respectively.</p>
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13 pages, 784 KiB  
Article
Development of a Luciferase Immunosorbent Assay for Detecting Crimean–Congo Hemorrhagic Fever Virus IgG Antibodies Based on Nucleoprotein
by Qi Chen, Yuting Fang, Ning Zhang and Chengsong Wan
Viruses 2025, 17(1), 32; https://doi.org/10.3390/v17010032 (registering DOI) - 28 Dec 2024
Viewed by 361
Abstract
Crimean–Congo hemorrhagic fever (CCHF) is a serious tick-borne disease with a wide geographical distribution. Classified as a level 4 biosecurity risk pathogen, CCHF can be transmitted cross-species due to its aerosol infectivity and ability to cause severe hemorrhagic fever outbreaks with high morbidity [...] Read more.
Crimean–Congo hemorrhagic fever (CCHF) is a serious tick-borne disease with a wide geographical distribution. Classified as a level 4 biosecurity risk pathogen, CCHF can be transmitted cross-species due to its aerosol infectivity and ability to cause severe hemorrhagic fever outbreaks with high morbidity and mortality. However, current methods for detecting anti-CCHFV antibodies are limited. This study aimed to develop a novel luciferase immunosorbent assay (LISA) for the detection of CCHFV-specific IgG antibodies. We designed specific antigenic fragments of the nucleoprotein and evaluated their sensitivity and specificity in detecting IgG in serum samples from mice and horses. In addition, we compared the efficacy of our LISA to a commercial enzyme-linked immunosorbent assay (ELISA). Our results demonstrated that the optimal antigen for detecting anti-CCHFV IgG was located within the stalk cut-off domain of the nucleoprotein. The LISA exhibited high specificity for serum samples from indicated species and significantly higher sensitivity (at least 128 times) compared with the commercial ELISA. The proposed CCHFV-LISA has the potential to facilitate serological diagnosis and epidemiological investigation of CCHFV in natural foci, providing valuable technical support for surveillance and early warning of this disease. Full article
36 pages, 1152 KiB  
Article
Celiac Disease and Liver Damage: The Gut–Liver Axis Strikes Back (Again)? A Retrospective Analysis in the Light of a Literature Review
by Aurelio Seidita, Federica Latteri, Mirco Pistone, Alessandra Giuliano, Luca Bertoncello, Giorgia Cavallo, Marta Chiavetta, Francesco Faraci, Alessia Nigro, Alessandro Termini, Laura Verona, Agnese Ammannato, Salvatore Accomando, Francesca Cavataio, Maria Letizia Lospalluti, Michele Citrano, Diana Di Liberto, Maurizio Soresi, Pasquale Mansueto and Antonio Carroccio
Nutrients 2025, 17(1), 85; https://doi.org/10.3390/nu17010085 (registering DOI) - 28 Dec 2024
Viewed by 296
Abstract
Background/Objectives: An increasing number of studies have reported liver involvement in both children and adults with celiac disease (CD). This often manifests as isolated hypertransaminasemia or hepatic steatosis (HS). The aim of this study was to define the prevalence of hypertransaminasemia and [...] Read more.
Background/Objectives: An increasing number of studies have reported liver involvement in both children and adults with celiac disease (CD). This often manifests as isolated hypertransaminasemia or hepatic steatosis (HS). The aim of this study was to define the prevalence of hypertransaminasemia and HS in a pediatric population with CD before starting a gluten-free diet (GFD) and to analyze how the introduction of a GFD could modify this condition. We also conducted a state-of-the-art literature review of the association between hypertransaminasemia, metabolic dysfunction-associated steatotic liver disease (MASLD) and CD. Methods: We retrospectively reviewed the clinical charts of pediatric CD patients diagnosed in three different pediatric units of Sicily, analyzing clinical, laboratory, ultrasound, and histology data before and 12 months after the introduction of a GFD. Results: A total of 160 patients (65.0% females, median age 6.4 (0.8–13.2) years) were included; hypertransaminasemia and HS prevalences at diagnosis were 8.1% and 6.1%, respectively. Subjects with hypertransaminasemia were younger (p = 0.01) than those without and had higher frequencies of HS (p = 0.034) and anti-tissue transglutaminase (tTg) immunoglobulin (Ig)G positivity (p = 0.046). Subjects with HS were younger (p = 0.0001) and had a higher frequency of hypertransaminasemia (p = 0.029) compared to non-steatotic ones. After 12 months of a GFD, hypertransaminasemia and HS persisted in 53.8% and 50.0% of patients, respectively. Conclusions: The prevalences of hypertransaminasemia and HS in Sicilian pediatric CD patients seem to be lower than those reported in other geographical areas. A GFD can reverse the trend of liver involvement, although periods of longer than 12 months may be necessary. However, a GFD has been associated with an increased prevalence of HS, and so regular follow-up involving a nutritionist should be recommended to guide physicians in patient management. Full article
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<p>Flow chart of the study. CD: Celiac disease.</p>
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<p>Possible pathogenic links between celiac disease and MASLD development both before and after the GFD introduction. AI: autoimmune; Ab: antibodies; APC: antigen-presenting cell; CD: celiac disease; CXCR: C-X-C motif chemokine receptor; FA: fatty acids; HDL: high-density lipoproteins; IEL: intraepithelial lymphocytes; IFN: interferon; Ig: immunoglobulin; IL: interleukin; IP: intestinal permeability; LPS: lipopolysaccharide; MASLD: metabolic dysfunction-associated steatotic liver disease; NF-kB: nuclear factor kappa-light-chain-enhancer of activated B cells; TNF: tumor necrosis factor; TG: triglyceride; TLR: Toll-like receptor; tTg: tissue transglutaminase.</p>
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26 pages, 4633 KiB  
Review
The Concept of Informal Green Space in Academic Research: A Comprehensive Literature Review on the Terminology Used
by Duy Thong Ta, Huixin Wang and Katsunori Furuya
Land 2025, 14(1), 43; https://doi.org/10.3390/land14010043 (registering DOI) - 28 Dec 2024
Viewed by 254
Abstract
Informal green spaces (IGSs) are vital yet under-researched urban areas that enhance biodiversity, provide ecosystem services, and improve the well-being of urban residents. However, the lack of a consistent definition and comprehensive understanding of their multifunctional roles has hindered their effective integration into [...] Read more.
Informal green spaces (IGSs) are vital yet under-researched urban areas that enhance biodiversity, provide ecosystem services, and improve the well-being of urban residents. However, the lack of a consistent definition and comprehensive understanding of their multifunctional roles has hindered their effective integration into urban planning. The current literature review aimed to clarify the concept of IGSs, analyze research trends, and identify further research areas. Using a combined bibliometric and systematic analysis approach, 150 articles from the Web of Science database, published from 1996 to 2024, were analyzed. The systematic analysis identified 54 relevant documents on the effects of green areas, revealing a diverse and growing body of research on IGSs, including their types, distribution, and socioeconomic contexts. The findings indicated an increasing trend in collaborative studies, using “informal green space” as the official term. This review proposed a clear and comprehensive definition of IGS, emphasizing its visibility, lack of formal recognition, minimal management, spontaneous vegetation, and temporary nature and underscoring its substantial environmental and social benefits. Furthermore, this review highlighted the need for standardized definitions and interdisciplinary studies to fully harness the potential of IGSs, thereby emphasizing their essential contribution to urban biodiversity and the regulation of urban microclimates. Full article
(This article belongs to the Special Issue Urban Forestry Dynamics: Management and Mechanization)
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<p>IGS on a sideroad.</p>
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<p>The research flow with five steps and three stages of selection.</p>
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<p>The number of publications on IGSs from 1996 to 2024. Although there are some short-run fluctuations, an overall upward trend can be observed, confirming the increased attention on this subject area.</p>
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<p>The geographic distribution of research outputs regarding IGSs, highlighting the frequency of contributions from various regions. The data underscore a significant concentration of research activity in the USA, reflecting regional priorities and expertise in the field.</p>
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<p>The number of scientific productions (<b>a</b>) and citations (<b>b</b>) related to IGSs by countries worldwide.</p>
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<p>The number of scientific productions (<b>a</b>) and citations (<b>b</b>) related to IGSs by countries worldwide.</p>
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<p>The graph illustrates the evolving trends in research topics related to IGSs from 2013 to 2024. Each topic is plotted on the vertical axis while the timeline is represented horizontally. The bubble size indicates each term’s frequency, with bigger bubbles denoting higher frequency. The data reveal several key patterns in the research landscape over the past decade, with the shift being from “space” and “conservation” to “benefits” and “ecosystem services”.</p>
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<p>The main structure of research themes in IGSs is based on keyword co-occurrence. There are five clusters of themes, and the main research theme is “biodiversity” in the “cities”.</p>
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<p>The number of distinct methods by research purpose.</p>
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<p>The IGS definition evolution map from the 17th century till now. In research from 2007 [<a href="#B71-land-14-00043" class="html-bibr">71</a>], it was stated that the term “urban wilderness” originated in the 17th century. It continued to be used and developed into an “urban void” and then an “urban wasteland.” During that period, the term “urban spontaneous vegetation” appeared and has been used in parallel with “informal green space” since 2014. Since then, many sub-terms have been developed depending on the research purpose.</p>
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<p>The concept of an IGS and its characteristics are connected. IGSs contain “spontaneous vegetation” that grows due to “nonmanagement”. This overgrown state can lead to negative feelings such as fear of crime, insects, and wild animals. The IGSs may be withered “temporarily” owing to weather or redevelopment. This affects their “visibility” and makes them insignificant; therefore, government institutions do not formally recognize them as green spaces. As a result, there are no policies or regulations regarding IGSs, leading to “nonmanagement”.</p>
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21 pages, 5843 KiB  
Article
Mucosal Immunization with an Influenza Vector Carrying SARS-CoV-2 N Protein Protects Naïve Mice and Prevents Disease Enhancement in Seropositive Th2-Prone Mice
by Mariia V. Sergeeva, Kirill Vasilev, Ekaterina Romanovskaya-Romanko, Nikita Yolshin, Anastasia Pulkina, Daria Shamakova, Anna-Polina Shurygina, Arman Muzhikyan, Dmitry Lioznov and Marina Stukova
Vaccines 2025, 13(1), 15; https://doi.org/10.3390/vaccines13010015 (registering DOI) - 28 Dec 2024
Viewed by 390
Abstract
Background/Objectives: Intranasal vaccination enhances protection against respiratory viruses by providing stimuli to the immune system at the primary site of infection, promoting a balanced and effective response. Influenza vectors with truncated NS1 are a promising vaccine approach that ensures a pronounced local CD8+ [...] Read more.
Background/Objectives: Intranasal vaccination enhances protection against respiratory viruses by providing stimuli to the immune system at the primary site of infection, promoting a balanced and effective response. Influenza vectors with truncated NS1 are a promising vaccine approach that ensures a pronounced local CD8+ T-cellular immune response. Here, we describe the protective and immunomodulating properties of an influenza vector FluVec-N carrying the C-terminal fragment of the SARS-CoV-2 nucleoprotein within a truncated NS1 open reading frame. Methods: We generated several FluVec-N recombinant vectors by reverse genetics and confirmed the vector’s genetic stability, antigen expression in vitro, attenuation, and immunogenicity in a mouse model. We tested the protective potential of FluVec-N intranasal immunization in naïve mice and seropositive Th2-prone mice, primed with aluminium-adjuvanted inactivated SARS-CoV-2. Immune response in immunized and challenged mice was analyzed through serological methods and flow cytometry. Results: Double intranasal immunization of naïve mice with FluVec-N reduced weight loss and viral load in the lungs following infection with the SARS-CoV-2 beta variant. Mice primed with alum-adjuvanted inactivated coronavirus experienced substantial early weight loss and eosinophilia in the lungs during infection, demonstrating signs of enhanced disease. A single intranasal boost immunization with FluVec-N prevented the disease enhancement in primed mice by modulating the local immune response. Protection was associated with the formation of specific IgA and the early activation of virus-specific effector and resident CD8+ lymphocytes in mouse lungs. Conclusions: Our study supports the potential of immunization with influenza vector vaccines to prevent respiratory diseases and associated immunopathology. Full article
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<p>The NS gene structure of the recombinant FluVec-N virus and expression of the chimeric NS1<sub>124</sub>_N protein. (<b>a</b>) Proteins encoded by two ORFs in the NS gene. (<b>b</b>) Western blot of infected cell lysates probed with anti-NS1 antibody. Viruses are indicated at the top; molecular weight marker is shown in kDa. (<b>c</b>) Immunofluorescent microscopy images of infected cells probed with anti-influenza NP antibody (A–D) and anti-SARS-CoV-2 N protein antibody (E–H). Viruses are indicated above the panel. The original images can be found in the <a href="#app1-vaccines-13-00015" class="html-app">Supplementary Materials</a>.</p>
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<p>The recombinant FluVec-N virus is attenuated and immunogenic in C57 mice. (<b>a</b>) Weight dynamics of mice intranasally inoculated with the indicated viruses, shown as percent of the initial weight (M ± SD). (<b>b</b>) Survival of mice intranasally inoculated with the indicated viruses. (<b>c</b>) T-cell immune response in mouse lungs to the influenza NP (366–374) peptide (left) or the SARS-CoV-2 N-protein (right) 10 days after immunization with the indicated virus. Relative content of total (upper panel) and individual (lower panel) subpopulations of cytokine-producing effector CD8+ T lymphocytes. Data obtained after subtracting background values of the relative content of cytokine-producing cells in the unstimulated control are presented. Statistical analysis was performed using ANOVA (<span class="html-italic">p</span> &lt; 0.0001), followed by pairwise group comparison using Tukey’s test. * <span class="html-italic">p</span> &lt; 0.05 marks significant differences with the DPBS control group.</p>
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<p>Protection experiments in BALB/c mice. (<b>a</b>) Study design. Immunization schemes for experimental groups are listed in the lower left, FI—formalin-inactivated. (<b>b</b>) Neutralizing SARS-CoV-2 antibodies in serum after second immunization. (<b>c</b>) N-protein specific antibodies in BAL after second immunization, sample dilution 1/2. (<b>d</b>) N-protein specific antibodies in BAL after challenge, sample dilution 1/2. ANOVA (<span class="html-italic">p</span> &lt; 0.0001) was followed by Dunnette’s test for multiple comparisons of each group with placebo: ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Protection experiments in BALB/c mice. (<b>a</b>,<b>b</b>) Infectious titers in BAL and the nasal turbinates (NTs) of challenged mice at 5 dpi. (<b>c</b>,<b>d</b>) Virus RNA in BAL and NTs of challenged mice at 5 dpi. Individual values and group means are presented. ANOVA (<span class="html-italic">p</span> &lt; 0.0001) was followed by Dunnette’s test for multiple comparisons of each group with placebo: * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001. (<b>e</b>) Body weight of challenged mice during a week after infection. Group means with 95% confidence intervals are presented. (<b>f</b>) Histopathological summary score of lung examination at 7 dpi. Individual values and group means are presented. The dotted line corresponds to the mean value for the placebo (infection control) group. (<b>g</b>) Microphotographs of the most pronounced pathological changes in bronchioles (upper panel) and blood vessels (lower panel) in the mouse lungs at 7 dpi, 400×.</p>
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<p>Innate immunity populations in the lungs of vaccinated BALB/c mice upon subsequent infection with SARS-CoV-2. (<b>a</b>) Alveolar macrophages; (<b>b</b>) interstitial macrophages; (<b>c</b>) monocytes; (<b>d</b>) dendritic cells; (<b>e</b>) eosinophils; (<b>f</b>) natural killers. Percentages of different cell types in the population of lung CD45+ cells are presented individually for each animal, and the horizontal line represents the group mean. An intact group is presented for comparison with normal non-infected mice. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001 calculated using Tukey post-hoc test following one-way ANOVA applied to log values (<span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Main populations of CD4+ and CD8+ memory T lymphocytes in BALB/c mouse lung tissue 5 days after infection. (<b>a</b>,<b>b</b>) Total tissue-resident memory cells (CD4/CD8+CD44+CD62L-CD103+CD69+); (<b>c</b>,<b>d</b>) N-specific cytokine-producing tissue-resident memory cells; (<b>e</b>,<b>f</b>) N-specific cytokine-producing effector memory cells. Percentages of cells in the corresponding population are presented individually for each animal, and the horizontal line represents the group mean. An intact group is presented for comparison with normal non-infected mice. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001 calculated using Tukey post-hoc test following one-way ANOVA applied to log values (<span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Gating strategy to identify innate immune cell populations.</p>
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<p>Gating strategy to identify adaptive immunity cell populations.</p>
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<p>Genetic stability of the FluVec-N chimeric NS gene. The whole-length RT-PCR amplification products are presented; pl—gene amplicon from the control plasmid. (<b>a</b>) Length of the NS gene segment of the virus clones from the 3rd passage of the FluVec-N (H1N1) recombinant virus carrying HA and NA from the A/PR/8/34 (H1N1) strain; (<b>b</b>) Length of the NS gene segment of the virus clones from the 2nd, 3rd, and 6th passages of the recombinant FluVec-N (H1N1pdm09) virus carrying HA and NA from the A/Guangdong-Maonan/SWL1536/2019 (H1N1pdm09) strain. The original images can be found in <a href="#app1-vaccines-13-00015" class="html-app">Supplementary Materials</a>.</p>
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<p>CD4+ T-cell response to the influenza NP (366–374) peptide and the SARS-CoV-2 N-protein in the lungs of immunized mice. Relative content of total (upper panel) and individual (lower panel) subpopulations of cytokine-producing effector CD4+ T lymphocytes was assessed 10 days after immunization with the indicated viruses. Data obtained after subtracting background values of the relative content of cytokine-producing cells in the unstimulated control are presented. Statistical analysis was performed using ANOVA (<span class="html-italic">p</span> &lt; 0.0001) followed by pairwise group comparison using Tukey’s test. * <span class="html-italic">p</span> &lt; 0.05 marks significant differences with the DPBS control group.</p>
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<p>Relative content of individual subpopulations of cytokine-producing resident CD4+ and CD8+ T lymphocytes. Data obtained after subtracting background values of the relative content of cytokine-producing cells in the unstimulated control are presented. Statistical analysis was performed using ANOVA (<span class="html-italic">p</span> &lt; 0.0001) followed by pairwise group comparison using Tukey’s test. * <span class="html-italic">p</span> &lt; 0.05 marks significant differences with the placebo control group.</p>
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<p>Relative content of individual subpopulations of cytokine-producing effector memory CD4+ and CD8+ T lymphocytes. Data obtained after subtracting background values of the relative content of cytokine-producing cells in the unstimulated control are presented. Statistical analysis was performed using ANOVA (<span class="html-italic">p</span> &lt; 0.0001) followed by pairwise group comparison using Tukey’s test. * <span class="html-italic">p</span> &lt; 0.05 marks significant differences with the placebo control group.</p>
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14 pages, 1615 KiB  
Article
Skin Physiological Parameters and Their Association with Severe Atopic Dermatitis in Mongolian Children
by Lkhamdari Batbileg, Sevjidmaa Baasanjav, Khosbayar Tulgaa, Oyuntugs Byambasukh, Khurelbaatar Naymdavaa, Enkhtur Yadamsuren and Baasanjargal Biziya
J. Clin. Med. 2025, 14(1), 112; https://doi.org/10.3390/jcm14010112 (registering DOI) - 28 Dec 2024
Viewed by 186
Abstract
Background: Atopic dermatitis (AD) is a chronic skin condition that weakens the skin barrier, leading to increased trans-epidermal water loss and reduced skin moisture. Understanding how these changes in the skin barrier relate to AD severity in Mongolian children may offer insights [...] Read more.
Background: Atopic dermatitis (AD) is a chronic skin condition that weakens the skin barrier, leading to increased trans-epidermal water loss and reduced skin moisture. Understanding how these changes in the skin barrier relate to AD severity in Mongolian children may offer insights that could apply to other regions facing similar environmental challenges. Methods: A cross-sectional study was conducted at the National Dermatology Center of Mongolia, involving 103 children with AD. Severity was assessed using the SCORAD index, and skin barrier function was measured through TEWL, skin moisture, and pH. Linear regression analyses were conducted, adjusting for age, skin physiological parameters, AD severity characteristics, and total IgE levels. Results: Among the participants, 48.54% were classified as having moderate AD, while 34.95% had severe AD. The mean SCORAD index was 43.19 ± 17.11. In the final adjusted regression analysis, higher TEWL was significantly associated with greater AD severity (non-lesional: B = 0.328, p = 0.004; lesional: B = 0.272, p = 0.007), while skin moisture showed an inverse association (non-lesional: B = −0.771, p < 0.001; lesional: B = −0.218, p < 0.001). The total IgE level was significantly higher in the severe AD group (p = 0.013). Although skin pH initially correlated with AD severity, it did not remain significant in multivariate analysis. Conclusions: This study emphasizes the role of skin barrier function, particularly increased TEWL and reduced moisture, in AD severity among Mongolian children. Full article
(This article belongs to the Section Dermatology)
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<p>(<b>a</b>) The mean daily maximum (red line) and minimum (blue line) temperatures represent the average maximum and minimum temperatures for each month in Ulaanbaatar over the past 30 years. Wind speeds are represented by the green line and the green shaded area. The dashed blue line indicates the threshold for cold nights, while the dashed red line marks the threshold for hot days [<a href="#B19-jcm-14-00112" class="html-bibr">19</a>]. (<b>b</b>) Monthly precipitation levels are categorized as mostly wet when exceeding 150 mm and mostly dry when below 30 mm. The graph depicts the average daily precipitation levels for each month in Ulaanbaatar. The black line shows the number of snowy days per month [<a href="#B19-jcm-14-00112" class="html-bibr">19</a>].</p>
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<p>Histogram and density curve of SCORAD index scores with reference lines marking thresholds for mild (&lt;25), moderate (25–50), and severe (&gt;50) atopic dermatitis.</p>
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<p>Lesional images of participants with severe atopic dermatitis. (<b>a</b>) Erythema, excoriations, and crusting localized on the cheek in a 6-month-old infant. (<b>b</b>) Erythema, excoriations, and crusting localized on the arm and torso in a 3-year-old child. (<b>c</b>) Erythema, scaling, and lichenification observed on the neck and upper back in a 5-year-old child. (<b>d</b>) Erythema, scaling, and lichenification observed on the forearms in a 7-year-old child.</p>
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<p>The correlation between SCORAD index and skin physiological parameters. (<b>a</b>) Skin moisture. (<b>b</b>) TEWL. (<b>c</b>) Skin pH. Measurements from the non-lesional areas are represented in navy, while measurements from the lesional areas are shown in red. Pearson correlation was used for non-lesional areas, while Spearman correlation was used for lesional areas. A visual representation of these correlations. Panel (<b>a</b>) illustrates the negative correlation between skin moisture and the SCORAD index, showing that lower moisture levels are associated with more severe AD. Panel (<b>b</b>) shows a positive correlation between TEWL and SCORAD index. Panel (<b>c</b>) demonstrates a weak but significant positive correlation between skin pH and SCORAD index.</p>
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