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Article
Natural History of Dilated Cardiomyopathy Due to c.77T>C (p.Val26Ala) in Emerin Protein
by Néstor Báez-Ferrer, Felícitas Díaz-Flores-Estévez, Antonia Pérez-Cejas, Pablo Avanzas, Rebeca Lorca, Pedro Abreu-González and Alberto Domínguez-Rodríguez
J. Clin. Med. 2024, 13(3), 660; https://doi.org/10.3390/jcm13030660 - 23 Jan 2024
Viewed by 1243
Abstract
(1) Introduction: Dilated cardiomyopathy (DCM) mainly affects young individuals and is the main indication of heart transplantation. The variant c.77T>C (p.Val26Ala) of the gene coding for emerin (EMD) in chromosome Xq28 has been catalogued as a pathogenic variant for the development of [...] Read more.
(1) Introduction: Dilated cardiomyopathy (DCM) mainly affects young individuals and is the main indication of heart transplantation. The variant c.77T>C (p.Val26Ala) of the gene coding for emerin (EMD) in chromosome Xq28 has been catalogued as a pathogenic variant for the development of DCM, exhibiting an X-linked inheritance pattern. (2) Methods: A retrospective study was conducted covering the period 2015–2023 in patients with DCM of genetic origin. The primary endpoint was patient age at onset of the first composite major cardiac event, in the form of a first episode of heart failure, malignant ventricular arrhythmia, or end-stage heart failure, according to the presence of truncating variant in titin gene (TTNtv) versus the p.Val26Ala mutation in the EMD protein. (3) Results: A total of 31 and 22 patients were included in the EMD group and TTNtv group, respectively. The primary endpoint was significantly higher in the EMD group, with a hazard ratio of 4.16 (95% confidence interval: 1.83–9.46; p = 0.001). At 55 years of age, all the patients in the EMD group had already presented heart failure, nine presented malignant ventricular arrhythmia (29%), and 13 required heart transplantation (42%). (4) Conclusions: DCM secondary to the c.77T>C (p.Val26Ala) mutation in the EMD gene is associated to an increased risk of major cardiac events compared to patients with DCM due to TTNtv, with a large proportion of transplanted patients in the fifth decade of life. Full article
(This article belongs to the Special Issue Advances in the Diagnosis and Management of Dilated Cardiomyopathy)
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<p>Study flowchart. Patient inclusion based on pathogenic variants. <span class="html-italic">BAG3</span>: BLC2-associated athanogene 3; DCM: Dilated cardiomyopathy; <span class="html-italic">EMD</span>: emerin; HFU: heart failure unit; <span class="html-italic">TTN</span>: titin.</p>
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<p>DCM debut age by five years. DCM: Dilated cardiomyopathy.</p>
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<p>Number of patients with DCM due to the pathogenic variant <span class="html-italic">p.Val26Ala</span> in the <span class="html-italic">EMD</span> gene and its geographical distribution in North of Tenerife Island. DCM: Dilated cardiomyopathy; EMD: emerin.</p>
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<p>Primary endpoint, defined as a composite of first episode of heart failure, malignant ventricular arrhythmia, and end-stage heart failure. <span class="html-italic">EMD</span>: emerin; <span class="html-italic">TTNtv</span>: truncating variant in titin gene.</p>
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<p>Age of Heart Failure First Episode. <span class="html-italic">EMD</span>: emerin; <span class="html-italic">TTNtv</span>: truncating variant in titin gene.</p>
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<p>(<b>A</b>) Age of First Malignant Ventricular Arrhythmia defined as a composite of sustained ventricular tachycardia, appropriate defibrillator therapy, or sudden cardiac death. <span class="html-italic">EMD</span>: emerin; <span class="html-italic">TTNtv</span>: truncating variant in titin gene. (<b>B</b>) Malignant Ventricular Arrhythmia by left ventricular ejection fraction lower than 40%. MVA: Malignant Ventricular Arrhythmia; LVEF: Left Ventricular Ejection Fraction. (<b>C</b>) Malignant Ventricular Arrhythmia by presence or absence of late gadolinium enhancement in cardiac magnetic resonance. MVA: Malignant Ventricular Arrhythmia; LGE: Late Gadolinium Enhancement.</p>
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<p>(<b>A</b>) Age of First Malignant Ventricular Arrhythmia defined as a composite of sustained ventricular tachycardia, appropriate defibrillator therapy, or sudden cardiac death. <span class="html-italic">EMD</span>: emerin; <span class="html-italic">TTNtv</span>: truncating variant in titin gene. (<b>B</b>) Malignant Ventricular Arrhythmia by left ventricular ejection fraction lower than 40%. MVA: Malignant Ventricular Arrhythmia; LVEF: Left Ventricular Ejection Fraction. (<b>C</b>) Malignant Ventricular Arrhythmia by presence or absence of late gadolinium enhancement in cardiac magnetic resonance. MVA: Malignant Ventricular Arrhythmia; LGE: Late Gadolinium Enhancement.</p>
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18 pages, 7855 KiB  
Article
Strain Monitoring-Based Fatigue Assessment and Remaining Life Prediction of Stiff Hangers in Highway Arch Bridge
by Jiayan Lei, Qinghui Kong, Xinhong Wang and Kaizhen Zhan
Symmetry 2022, 14(12), 2501; https://doi.org/10.3390/sym14122501 - 25 Nov 2022
Cited by 4 | Viewed by 1573
Abstract
The fatigue problem of hangers is fatal for the safety of the whole bridge structure. The objective of this study is to present a strain monitoring-based method to assess the fatigue performance of stiff hangers in highway arch bridges and predict their remaining [...] Read more.
The fatigue problem of hangers is fatal for the safety of the whole bridge structure. The objective of this study is to present a strain monitoring-based method to assess the fatigue performance of stiff hangers in highway arch bridges and predict their remaining life. A vehicle–bridge interaction system was constructed to analyze the dynamic behavior in the area close to the key welding line where the hanger was connected to the deck slab. Then, the empirical mode decomposition (EMD) algorithm and rain-flow counting algorithm were used in signal preprocessing and statistical analysis of field monitoring data. Finally, the fatigue life was assessed according to the standards in the Chinese Code for the Design of Steel Structures, as well as the Eurocode 3 and AASHTO codes. Differences were found in the fatigue behavior of hangers, and the shortest hanger was shown to surfer more serious fatigue damage. The influence of vehicle volume growth and low-stress amplitude on the fatigue performance was also discussed. Full article
(This article belongs to the Section Engineering and Materials)
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<p>Flowchart of strain monitoring-based fatigue assessment method.</p>
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<p>Panoramic view of the Tian Yuan Bridge.</p>
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<p>Elevation of the bridge and sketch of girder section (unit: m(ft)).</p>
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<p>Details of the hanger: (<b>a</b>) picture; (<b>b</b>) section view; (<b>c</b>) location to the slab.</p>
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<p>Detailed view of the finite element model: (<b>a</b>) cross-section of girder; (<b>b</b>) cross-section of arch rib; (<b>c</b>) bridge FE model.</p>
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<p>The first three mode shapes of the bridge in FE model: (<b>a</b>) first-order; (<b>b</b>) second-order; (<b>c</b>) third-order.</p>
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<p>FE model of HS20-44 truck.</p>
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<p>Stress distribution in the connection area.</p>
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<p>Simulated strain time history.</p>
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<p>Application of EMD to time history of simulated strain from the first hanger (<span class="html-italic">SNR</span> = 7 dB): (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Comparison between the original signal and the filtered signal: (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Application of EMD to strain measurement in the first hanger: (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Comparison between original signal and filtered signal (the first hanger).</p>
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<p>Original and filtered strain at the critical location in the first hanger on 14 August 2020.</p>
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<p>Histograms of daily stress spectra.</p>
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<p>Curves of daily stress spectra.</p>
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<p>Histograms of the standard daily stress spectrum (<b>a</b>–<b>g</b>): the first hanger to the seventh hanger.</p>
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<p>Histograms of the standard daily stress spectrum (<b>a</b>–<b>g</b>): the first hanger to the seventh hanger.</p>
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<p>S–N curves in Eurocode 3.</p>
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20 pages, 5403 KiB  
Article
A Condition-Monitoring Approach for Diesel Engines Based on an Adaptive VMD and Sparse Representation Theory
by Xiao Yang, Fengrong Bi, Yabing Jing, Xin Li and Guichang Zhang
Energies 2022, 15(9), 3315; https://doi.org/10.3390/en15093315 - 2 May 2022
Cited by 3 | Viewed by 1565
Abstract
This paper presents a novel method for condition monitoring using the RMS residual of vibration signal reconstruction based on trained dictionaries through sparse representation theory. Measured signals were firstly decomposed into intrinsic mode functions (IMFs) for training the initial dictionary. In this step, [...] Read more.
This paper presents a novel method for condition monitoring using the RMS residual of vibration signal reconstruction based on trained dictionaries through sparse representation theory. Measured signals were firstly decomposed into intrinsic mode functions (IMFs) for training the initial dictionary. In this step, an adaptive variational mode decomposition (VMD) was proposed for providing information with higher accuracy, and the decompositions were used as discriminative atoms for sparse representation. Then, the overcomplete dictionary for sparse coding was learned from IMFs to reserve the highlight feature of the signals. As the dictionaries were trained, newly measured signals could be directly reconstructed without any signal decompositions or dictionary learning. This meant errors likely introduced by signal process techniques, such as VMD, EMD, etc., could be excluded from the condition monitoring. Moreover, the efficiency of the fault diagnosis was greatly improved, as the reconstruction was fast, which showed a great potential in online diagnosis. The RMS of the residuals between the reconstructed and measured signals was extracted as a feature of condition. A case study on operating condition identification of a diesel engine was carried out experimentally based on vibration accelerations, which validated the availability of the proposed feature extraction and condition-monitoring approach. The presented results showed that the proposed method resulted in a great improvement in the fault feature extraction and condition monitoring, and is a promising approach for future research. Full article
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<p>Condition-monitoring scheme.</p>
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<p>Simulated signal.</p>
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<p>Decomposition results using optimized VMD with correlation kurtosis.</p>
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<p>Decomposition results using optimized VMD with <span class="html-italic">KCI</span>.</p>
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<p>Decomposition results using optimized VMD with energy difference.</p>
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<p>Workflow of condition-monitoring approach.</p>
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<p>Bench test setup: (<b>a</b>) side view of test rig; (<b>b</b>) accelerometer arrangement.</p>
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<p>Intercepted vibration signal under Condition 1: (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Decomposition results for VMD: (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Reconstructed vibration signals under Condition 1: (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Decomposition results of the CEEMDAN: (<b>a</b>) time domain; (<b>b</b>) frequency domain.</p>
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<p>Central frequencies with different <span class="html-italic">K</span> values: (<b>a</b>) <span class="html-italic">K</span> = 5; (<b>b</b>) <span class="html-italic">K</span> = 6; (<b>c</b>) <span class="html-italic">K</span> = 7.</p>
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<p>Reconstruction residuals during the K-SVD process: (<b>a</b>) Condition 1; (<b>b</b>) Condition 2; (<b>c</b>) Condition 3; (<b>d</b>) Condition 4; (<b>e</b>) Condition 5; (<b>f</b>) Condition 6; (<b>g</b>) Condition 7.</p>
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<p>RMS value of residuals derived from signals of different conditions, where point color corresponds to number of conditions. Results by dictionary learned from: (<b>a</b>) Condition 1; (<b>b</b>) Condition 2; (<b>c</b>) Condition 3; (<b>d</b>) Condition 4; (<b>e</b>) Condition 5; (<b>f</b>) Condition 6; (<b>g</b>) Condition 7.</p>
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<p>RMS values for residuals of different conditions using DWT-gained dictionaries, where point color corresponds to number of conditions. Results by dictionary learned from: (<b>a</b>) Condition 1; (<b>b</b>) Condition 2; (<b>c</b>) Condition 3; (<b>d</b>) Condition 4; (<b>e</b>) Condition 5; (<b>f</b>) Condition 6; (<b>g</b>) Condition 7.</p>
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<p>RMS values for residuals of different conditions using DWT-gained dictionaries, where point color corresponds to number of conditions. Results by dictionary learned from: (<b>a</b>) Condition 1; (<b>b</b>) Condition 2; (<b>c</b>) Condition 3; (<b>d</b>) Condition 4; (<b>e</b>) Condition 5; (<b>f</b>) Condition 6; (<b>g</b>) Condition 7.</p>
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21 pages, 10403 KiB  
Article
Intrinsic Identification and Mitigation of Multipath for Enhanced GNSS Positioning
by Qianxia Li, Linyuan Xia, Ting On Chan, Jingchao Xia, Jijun Geng, Hongyu Zhu and Yuezhen Cai
Sensors 2021, 21(1), 188; https://doi.org/10.3390/s21010188 - 30 Dec 2020
Cited by 10 | Viewed by 3036
Abstract
In global navigation satellite system (GNSS)-based positioning and applications, multipath is by far the most obstinate impact. To overcome paradoxical issues faced by current processing approaches for multipath, this paper employs an intrinsic method to identify and mitigate multipath based on empirical mode [...] Read more.
In global navigation satellite system (GNSS)-based positioning and applications, multipath is by far the most obstinate impact. To overcome paradoxical issues faced by current processing approaches for multipath, this paper employs an intrinsic method to identify and mitigate multipath based on empirical mode decomposition (EMD) and Hilbert–Huang transform (HHT). Frequency spectrum and power spectrum are comprehensively employed to identify and extract multipath from complex data series composed by combined GNSS observations. To systematically inspect the multipath from both code range and carrier phase, typical kinds of combinations of the GNSS observations including the code minus phase (CMP), differential correction (DC), and double differential (DD) carrier phase are selected for the suggested intrinsic approach to recognize and mitigate multipath under typical positioning modes. Compared with other current processing algorithms, the proposed methodology can deal with multipath under normal positioning modes without recourse to the conditions that satellite orbits are accurately repeated and surrounding environments of observing sites remain intact. The method can adaptively extract and eliminate multipath from solely the GNSS observations using intrinsic decomposition mechanism. From theoretical discussions and validating tests, it is found that both code and carrier phase multipath can be identified and distinguished from ionospheric delay and other impacts using the EMD based techniques. The resultant positioning accuracy is therefore improved to an obvious extent after the removal of the multipath. Overall, the proposed method can form an extensive and sound technical frame to enhance localization accuracy under typical GNSS positioning modes and harsh multipath environments. Full article
(This article belongs to the Special Issue GNSS Data Processing and Navigation in Challenging Environments)
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<p>Data collecting site on DOY 310–321, 2018.</p>
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<p>Sky plots on DOY 310 (6 November 2018) from 9:00 a.m. to 10:30 a.m. local on time and observation time spans for each satellite, satellite number in different colors represent type of orbits, for GEO in magenta, IGSO in red, and MEO in green.</p>
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<p>Code multipath and satellite elevations, (<b>a</b>) is for C04, (<b>b</b>) is for C09, (<b>c</b>) is for C11, and (<b>d</b>) is for G19.</p>
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<p>PSD of code multipath (from 9:00 a.m. to 10:30 a.m. local time in DOY 310). (<b>a</b>) C04 and C09; (<b>b</b>) C11 and G19.</p>
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<p>Spectrums of code multipath on DOY 310 (from 9:00 a.m. to 10:30 a.m. local time). (<b>a</b>) C04, (<b>b</b>) C09, (<b>c</b>) C11, and (<b>d</b>) G19.</p>
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<p>Code minus carrier on DOY 310. (<b>a</b>) C04, (<b>b</b>) C09, (<b>c</b>) C11, and (<b>d</b>) G19.</p>
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<p>PSD of <span class="html-italic">CMC</span> on DOY 310.</p>
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<p>Decomposed layers for <span class="html-italic">CMC</span> using EMD approach. (<b>a</b>) C09 and (<b>b</b>) G19.</p>
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<p>PSD for each decomposed layer from <span class="html-italic">CMC</span> using HHT. (<b>a</b>) C09 and (<b>b</b>) G19.</p>
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<p>Time-frequency spectrums of IMFs for <span class="html-italic">CMC</span>. (<b>a</b>) C09 and (<b>b</b>) G19.</p>
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<p>Signal reflection and multipath effects.</p>
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<p>Examples of ionospheric delays and frequency spectrums. (<b>a</b>) Ionospheric delays extracted by dual frequency combinations. (<b>b</b>) Frequency spectrum of ionospheric delay using FFT.</p>
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<p>Comparisons of multipath extracted by HHT and computed from dual-frequency combination. (<b>a</b>) C09 and (<b>b</b>) G19.</p>
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<p>Errors of single point positioning. (<b>a</b>) Horizontal error and (<b>b</b>) vertical error.</p>
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<p>Comparison of root-mean-square error of single point positioning.</p>
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<p>Distribution of root-mean-square error in single point positioning.</p>
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<p>(<b>a</b>) Receiver and antenna used for dynamical experiment; (<b>b</b>) sky plots of satellites, satellite number in different colors represent type of orbits, for GEO in magenta, IGSO in red, and MEO in green.</p>
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<p>Trajectories of kinematic experiment, result with multipath eliminated is indicated in blue and compared with result influenced by multipath and indicated in yellow.</p>
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<p>Root mean square error in kinematic single point positioning.</p>
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<p>Distribution of root-mean-square error in kinematic single point positioning.</p>
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<p>Base station for DGNSS experiment on SYSU campus.</p>
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<p>(<b>a</b>) Decomposed layers for <span class="html-italic">CCR</span> of satellite C14 using EMD approach, (<b>b</b>) is multipath of <span class="html-italic">CCR</span> extracted, (<b>c</b>) is the root mean square error in DGNSS experiment, and (<b>d</b>) is the distribution of root mean square for positioning result.</p>
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<p>Data collection in SYSU campus for precise relative positioning experiment.</p>
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<p>(<b>a</b>) Decomposed layers for double differential carrier phase of satellite G12 using EMD approach, (<b>b</b>) is multipath of double differential carrier phase extracted by HHT, (<b>c</b>) is the root-mean-square error of precise relative positioning, and (<b>d</b>) is the distribution of the root mean square.</p>
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28 pages, 7992 KiB  
Article
VPSO-SVM-Based Open-Circuit Faults Diagnosis of Five-Phase Marine Current Generator Sets
by Gang Yao, Shuxiu Pang, Tingting Ying, Mohamed Benbouzid, Mourad Ait-Ahmed and Mohamed Fouad Benkhoris
Energies 2020, 13(22), 6004; https://doi.org/10.3390/en13226004 - 17 Nov 2020
Cited by 11 | Viewed by 2182
Abstract
Generating electricity from enormous energy contained in oceans is an important means to develop and utilize marine sustainable energy. An offshore marine current generator set (MCGS) is a system that runs in seas to produce electricity from tremendous energy in tidal streams. MCGSs [...] Read more.
Generating electricity from enormous energy contained in oceans is an important means to develop and utilize marine sustainable energy. An offshore marine current generator set (MCGS) is a system that runs in seas to produce electricity from tremendous energy in tidal streams. MCGSs operate in oceanic environments with high humidity, saline-alkali water, and impacts of marine organisms and waves, and consequently malfunctions can happen along with the need for expensive inspection and maintenance. In order to achieve effective fault diagnosis of MCGSs in events of failure, this paper focuses on fault detection and diagnosis (FDD) of MCGSs based on five-phase permanent magnet synchronous generators (FP-PMSGs) with the third harmonic windings (THWs). Firstly, mathematical models were built for a hydraulic turbine and the FP-PMSG with THWs; then, a fault detection method based on empirical mode decomposition (EMD) and Hilbert transform (HT) was studied to detect different open-circuit faults (OCFs) of the generator; afterwards, a variable-parameter particle swarm optimization (VPSO) was designed to optimize the penalty and kernel function parameters of a support vector machine (SVM), which was named the VPSO-SVM method in this paper and used to perform fault diagnosis of the FP-PMSG. Finally, simulation blocks were built with MATLAB/Simulink to realize the mathematical models of the MCGS, and the proposed FDD method was coded with MATLAB. The effectiveness of the proposed VPSO-SVM method was validated by simulation results analysis and comparisons. Full article
(This article belongs to the Section A3: Wind, Wave and Tidal Energy)
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<p>Structure of the studied marine current generator set (MCGS).</p>
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<p>Simulation platform of the five-phase permanent magnet synchronous generator (FP-PMSG)-based direct-drive MCGS.</p>
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<p>Simulation blocks of the FP-PMSG with third harmonic windings (THWs).</p>
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<p>Terminal currents of the FP-PMSG with THWs without faults and Fast Fourier transformation of phase <span class="html-italic">a</span> current. (<b>a</b>) Terminal currents of the FP-PMSG with THWs in normal condition with <span class="html-italic">v</span><sub>0</sub> = 3.6 m/s. (<b>b</b>) Zoomed terminal currents of FP-PMSG between 0.07 s and 0.12 s. (<b>c</b>) Fast Fourier transformation of the terminal current of phase <span class="html-italic">a.</span></p>
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<p>DC bus voltage during the 0.2 s simulation without faults.</p>
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<p>Phase currents of the FP-PMSG with three different open-circuit faults (OCFs) in the generator.</p>
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<p>Direct-axis current and its five intrinsic mode functions (IMFs). (<b>a</b>) Direct-axis component of five-phase fundamental currents with three different OCFs in the generator. (<b>b</b>) Five IMFs of the direct-axis current.</p>
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<p>Direct-axis current and its five intrinsic mode functions (IMFs). (<b>a</b>) Direct-axis component of five-phase fundamental currents with three different OCFs in the generator. (<b>b</b>) Five IMFs of the direct-axis current.</p>
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<p>Instantaneous amplitude, phase and frequency of the analytic signals after Hilbert transform applied to the five IMFs. (<b>a</b>) Instantaneous amplitude of the five IMFs after Hilbert transform. (<b>b</b>) Instantaneous phase of the five IMFs after Hilbert transform. (<b>c</b>) Instantaneous frequency of the five IMFs after Hilbert transform.</p>
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<p>Output currents of three faulty phases with fault indicator.</p>
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<p>Indicate spike amplitudes distinguishing two different reasons leading to zero terminal phase current. (<b>a</b>) An OCF occurs in a generator’s single phase <span class="html-italic">a</span>, or its current sensor; (<b>b</b>) OCFs occur in generator’s two adjacent phases <span class="html-italic">a</span> and <span class="html-italic">b</span>, or their current sensors; (<b>c</b>) OCFs occur in generator’s two non-adjacent phases <span class="html-italic">a</span> and <span class="html-italic">c</span>, or their current sensors.</p>
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<p>The 600 samples with their corresponding labels.</p>
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<p>Fault classification results on testing set by support vector machine (SVM) with assigned parameters <span class="html-italic">C</span> = 2 and <span class="html-italic">g</span> = 1 (classification accuracy = 99.33%).</p>
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<p>Fault classification results on testing set by CPSO-SVM with SVM parameters <span class="html-italic">C</span> = 6.8856 and <span class="html-italic">g</span> = 0.65746 optimized by CPSO. (<b>a</b>) Swarm average fitness evolving process along with iterations (73 iteration steps to converge with constant <span class="html-italic">c</span><sub>1</sub> = <span class="html-italic">c</span><sub>2</sub> = 1.5 and <span class="html-italic">ω</span> = 1 in PSO). (<b>b</b>) Fault classification results of CPSO-SVM (classification accuracy = 100%).</p>
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<p>Fault classification results on testing set by VPSO-SVM with SVM parameters <span class="html-italic">C</span> = 6.8856 and <span class="html-italic">g</span> = 0.65746 optimized by CPSO. (<b>a</b>) Variation curves of <span class="html-italic">c</span><sub>1</sub>, <span class="html-italic">c</span><sub>2</sub> and <span class="html-italic">ω</span> in PSO along with iterations. (<b>b</b>) Swarm average fitness evolving process along iterations (29 iteration steps to converge with variable <span class="html-italic">c</span><sub>1</sub>, <span class="html-italic">c</span><sub>2</sub> and <span class="html-italic">ω</span> in PSO). (<b>c</b>) Fault classification results of VPSO-SVM with classification accuracy = 100%.</p>
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<p>Direct-axis components of five-phase fundamental currents in five simulations with single-phase OCF occurring in each phase of the FP-PMSG.</p>
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<p>IMFs and residue of direct-axis current in five simulations.</p>
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<p>The 1000 samples with their corresponding labels.</p>
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<p>Fault classification results on testing set by SVM with assigned parameters <span class="html-italic">C</span> = 2 and <span class="html-italic">g</span> = 1 (classification accuracy = 94.2%).</p>
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<p>Fault classification results on testing set by CPSO-SVM with SVM parameters <span class="html-italic">C</span> = 10 and <span class="html-italic">g</span> = 0.01 optimized by CPSO. (<b>a</b>) Swarm average fitness evolving process along with iterations (88 iteration steps to converge with constant <span class="html-italic">c</span><sub>1</sub> = <span class="html-italic">c</span><sub>2</sub> = 1.5 and <span class="html-italic">ω</span> = 1 in PSO). (<b>b</b>) Fault classification results of CPSO-SVM (classification accuracy = 96.4%).</p>
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<p>Fault classification results on testing set by VPSO-SVM with SVM parameters <span class="html-italic">C</span> = 10 and <span class="html-italic">g</span> = 0.01 optimized by CPSO. (<b>a</b>) Variation curves of <span class="html-italic">c</span><sub>1</sub>, <span class="html-italic">c</span><sub>2</sub> and <span class="html-italic">ω</span> in PSO along with iterations. (<b>b</b>) Swarm average fitness evolving process along iterations (33 iteration steps to converge with variable <span class="html-italic">c</span><sub>1</sub>, <span class="html-italic">c</span><sub>2</sub> and <span class="html-italic">ω</span> in PSO). (<b>c</b>) Fault classification results of VPSO-SVM with classification accuracy = 96.4%.</p>
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18 pages, 4852 KiB  
Article
High Capacity HEVC Video Hiding Algorithm Based on EMD Coded PU Partition Modes
by Zhonghao Li, Laijin Meng, Xinghao Jiang and Zhaohong Li
Symmetry 2019, 11(8), 1015; https://doi.org/10.3390/sym11081015 - 6 Aug 2019
Cited by 15 | Viewed by 2716
Abstract
Data hiding in videos has been a big concern as their rich redundancy can be used for embedding a lot of secret information. Further, as high efficiency video coding (HEVC) introduces many innovative technologies compared with the previous standard, H.264, it has gradually [...] Read more.
Data hiding in videos has been a big concern as their rich redundancy can be used for embedding a lot of secret information. Further, as high efficiency video coding (HEVC) introduces many innovative technologies compared with the previous standard, H.264, it has gradually become the mainstream. Therefore, it is valuable to develop new information hiding algorithms by using novel features of HEVC. A HEVC video data hiding algorithm based on prediction unit (PU) partition modes from inter prediction process is proposed in this paper. Firstly, code units (CUs) in two sizes of 8 × 8 and 16 × 16 are selected for embedding, then the PU partition modes in these CUs are coded by a spatial coding method. After that, two specific hiding algorithms by modifying coded PU partition modes in CUs of 8 × 8 and 16 × 16 are proposed, respectively. Experimental results show that the proposed algorithm has achieved excellent performance with high visual quality, and high embedding capacity and low bitrate increase in both high- and low-resolution videos compressed with different quantization parameters (QPs). Compared with the state-of-the-art work, the proposed algorithm achieves a much higher capacity while keeping quite high visual quality with little increase of bitrate. Full article
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Graphical abstract
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<p>Example of quadtree partition structure.</p>
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<p>Prediction unit (PU) partition modes for intra-prediction.</p>
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<p>PU partition modes for inter-prediction.</p>
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<p>Code units (CU) structures and PU partition modes of the example slice. (<b>a</b>) is from ParkScene 1920 × 1080 and (<b>b</b>) is from Keiba 832 × 480.</p>
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<p>The distribution of CUs with different sizes. (<b>a</b>) CU distribution under high resolution; (<b>b</b>) CU distribution under low resolution.</p>
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<p>The distribution of CUs with different sizes. (<b>a</b>) CU distribution under high resolution; (<b>b</b>) CU distribution under low resolution.</p>
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<p>Magnified coding tree units (CTU) in the bottom-right corner from <a href="#symmetry-11-01015-f004" class="html-fig">Figure 4</a>a.</p>
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<p>The points’ values in the 2-dimensional lattice.</p>
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<p>Subjective performance evaluation of the second P-slices from: (<b>a</b>) ParkScene 1920 × 1080; (<b>b</b>) Keiba 832 × 480. The clean slices without embedded information are laid on the first line, and slices with hidden information are placed in the second line.</p>
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<p>Comparison of distortion (RD) with Y. Yang’s paper ([<a href="#B33-symmetry-11-01015" class="html-bibr">33</a>]): (<b>a</b>) RD of BasketballDrive 1920 × 1080, Kimono 1920 × 1080 and Tennis 1920 × 1080; (<b>b</b>) RD of ChinaSpeed 1024 × 768, Keiba 832 × 480 and PartyScene 832 × 480.</p>
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<p>Comparison of distortion (RD) with Y. Yang’s paper ([<a href="#B33-symmetry-11-01015" class="html-bibr">33</a>]): (<b>a</b>) RD of BasketballDrive 1920 × 1080, Kimono 1920 × 1080 and Tennis 1920 × 1080; (<b>b</b>) RD of ChinaSpeed 1024 × 768, Keiba 832 × 480 and PartyScene 832 × 480.</p>
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<p>Comparison of capacity (RC) with [<a href="#B33-symmetry-11-01015" class="html-bibr">33</a>]: (<b>a</b>) RC of BasketballDrive 1920 × 1080, Kimono 1920 × 1080 and Tennis 1920 × 1080; (<b>b</b>) RC of ChinaSpeed 1024 × 768, Keiba 832 × 480 and PartyScene 832 × 480.</p>
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<p>BRI comparison with Yang and Li ([<a href="#B32-symmetry-11-01015" class="html-bibr">32</a>]) and Yang et al. ([<a href="#B33-symmetry-11-01015" class="html-bibr">33</a>]).</p>
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30 pages, 9362 KiB  
Article
Emerin Is Required for Proper Nucleus Reassembly after Mitosis: Implications for New Pathogenetic Mechanisms for Laminopathies Detected in EDMD1 Patients
by Magda Dubińska-Magiera, Katarzyna Kozioł, Magdalena Machowska, Katarzyna Piekarowicz, Daria Filipczak and Ryszard Rzepecki
Cells 2019, 8(3), 240; https://doi.org/10.3390/cells8030240 - 13 Mar 2019
Cited by 15 | Viewed by 7202
Abstract
Emerin is an essential LEM (LAP2, Emerin, MAN1) domain protein in metazoans and an integral membrane protein associated with inner and outer nuclear membranes. Mutations in the human EMD gene coding for emerin result in the rare genetic disorder: Emery–Dreifuss muscular dystrophy type [...] Read more.
Emerin is an essential LEM (LAP2, Emerin, MAN1) domain protein in metazoans and an integral membrane protein associated with inner and outer nuclear membranes. Mutations in the human EMD gene coding for emerin result in the rare genetic disorder: Emery–Dreifuss muscular dystrophy type 1 (EDMD1). This disease belongs to a broader group called laminopathies—a heterogeneous group of rare genetic disorders affecting tissues of mesodermal origin. EDMD1 phenotype is characterized by progressive muscle wasting, contractures of the elbow and Achilles tendons, and cardiac conduction defects. Emerin is involved in many cellular and intranuclear processes through interactions with several partners: lamins; barrier-to-autointegration factor (BAF), β-catenin, actin, and tubulin. Our study demonstrates the presence of the emerin fraction which associates with mitotic spindle microtubules and centrosomes during mitosis and colocalizes during early mitosis with lamin A/C, BAF, and membranes at the mitotic spindle. Transfection studies with cells expressing EGFP-emerin protein demonstrate that the emerin fusion protein fraction also localizes to centrosomes and mitotic spindle microtubules during mitosis. Transient expression of emerin deletion mutants revealed that the resulting phenotypes vary and are mutant dependent. The most frequent phenotypes include aberrant nuclear shape, tubulin network mislocalization, aberrant mitosis, and mislocalization of centrosomes. Emerin deletion mutants demonstrated different chromatin binding capacities in an in vitro nuclear assembly assay and chromatin-binding properties correlated with the strength of phenotypic alteration in transfected cells. Aberrant tubulin staining and microtubule network phenotype appearance depended on the presence of the tubulin binding region in the expressed deletion mutants. We believe that the association with tubulin might help to “deliver” emerin and associated membranes to decondensing chromatin. Preliminary analyses of cells from Polish patients with EDMD1 revealed that for several mutations thought to be null for emerin protein, a truncated emerin protein was present. We infer that the EDMD1 phenotype may be strengthened by the toxicity of truncated emerin expressed in patients with certain nonsense mutations in EMD. Full article
(This article belongs to the Collection Lamins and Laminopathies)
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Figure 1
<p>Functional domains identified in emerin, emerin domains identified as necessary for interaction with other nuclear proteins, and constructs used in this study. Emerin contains a LEM domain [<a href="#B32-cells-08-00240" class="html-bibr">32</a>,<a href="#B33-cells-08-00240" class="html-bibr">33</a>] on its very N-terminus, followed by a so-called LEM-like domain located within the functional lamin-binding domain. The Adenomatous Polyposis Coli (APC)-like domain, responsible for interaction with β-catenin, localizes to fragment 168–186 aa residues, and the transmembrane domain localizes to 223–246 aa residues. Upper: emerin interactions and mapped emerin domains necessary for the interactions. Lower: the set of genetic constructs prepared in our laboratory and used for the study. LEM—LAP2 Emerin MAN1 domain; APC—domain necessary for interaction with β-catenin and Wnt signaling; TM—transmembrane domain; EGFP—the position of the EGFP protein fused to emerin proteins. Numbering represents amino acid residue numbers present in a particular construct. E70—deletion mutant containing amino acid residues from 1 to 70; E70–140—a construct containing amino acid residues from 70 to 140. The rest of the mutants are designated following the same pattern.</p>
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<p>Cell cycle-dependent distribution of emerin and BAF in HeLa cells. (<b>A</b>) A fraction of emerin colocalizes with centrosomes and spindle microtubules during mitosis. Cells representing typical emerin phenotypes for particular mitosis stage were taken in order to demonstrate a fraction of emerin associated with mitotic spindle and centrosomes. Arrowheads indicate the position of centrosomes (a–e), arrows indicate the spindle microtubule (a,b,d,e) and midbody (f). (<b>B</b>) Emerin binding partner BAF colocalizes with centrosomes and spindle microtubules. Arrowheads indicate the position of centrosomes (a–f), arrows indicate spindle microtubule (d,e) and midbody (f). Note the change in staining character for BAF from “grainy” (a–c) to “smooth” (d–f). Note the colocalization between polar microtubule and emerin very clearly visible between centrosomes (A, a, arrow) and nuclear envelope invagination (A, b, arrow) associated with centrosomes and astral microtubules in NE invaginations. Arrows point to microtubules associated with emerin. HeLa cells were stained with antibodies against emerin (green, A), BAF (green, B), and β-tubulin (red). Single Z-stacks, 1.5 μm through cell nucleus or mitotic spindle centered at the centrosomes were visualized. Scale bar, 5 μm.</p>
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<p>Cell cycle-dependent distribution of emerin and pericentrin in comparison to lamin A/C in HeLa cells. (<b>A</b>) Emerin colocalizes with lamin A/C during mitosis. Single confocal sections centered at centrosomes located at the nuclear envelope at prophase and prometaphase are shown in order to demonstrate the distribution of emerin and lamin next to centrosomes at the nuclear envelope. At metaphase to anaphase the confocal section was centered at the mitotic spindle. Arrowheads indicate the nuclear envelope invagination formed by moving centrosomes into the nuclear space (a–c), and arrow indicates the nuclear envelope fragment and nucleus section containing emerin but free of polymerized lamin A/C associated with forming the mitotic spindle between centrosomes inside the cell nucleus (c). At prophase and prometaphase, emerin colocalizes with lamin A/C in the regions of the nuclear envelope and associated with NE centrosomes. At prometaphase, when centrosomes have already migrated inside the cell nucleus, membranes and emerin are still associated with centrosomes and mitotic spindle microtubules entering the nuclear space (prometaphase, c) while lamin A/C colocalization is gradually lost (arrow on c). These regions showed a weaker signal for lamin A/C (possibly because of depolymerization and diffusion of lamins) while the emerin signal remained at a steady level. The bulk of the protein fraction was dispersed all over the cell until anaphase (d–e), when proteins started to associate with decondensing chromatin. At telophase, all lamin A/C proteins were associated with or around chromatin, while a fraction of emerin still remained cytoplasmic (f). (<b>B</b>) Distribution of lamin A/C in relation to centrosomes during mitosis in HeLa cells. Pericentrin (arrowheads) indicates the position of centrosomes during mitotic division (a–f). Single confocal sections centered at centrosomes were shown throughout mitosis. Centrosome positions are visualized by arrowheads. Arrow demonstrate the position of remnants of the fragmented nuclear lamina structure associated with spindle microtubules at one spindle pole (c). Note the nuclear lamina invaginations associated with centrosomes entering the nuclear space at prophase and not fully depolymerized nuclear lamina still surrounding the cell nucleus at prometaphase, which confirms previous reports on the association of nuclear lamina and emerin with membranes with microtubules at prophase. HeLa cells were stained with antibodies against emerin (green, A), pericentrin (green, B), and lamin A/C (red). Single section, 1.5 μm, were taken centered at spindle microtubules or centrosomes. Scale bar, 5 μm.</p>
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<p>Transfected emerin-EGFP fusion protein associates with microtubules, centrosomes, and mitotic spindle microtubules. HeLa cells were transfected with plasmids encoding EGFP protein alone (Panel <b>A</b> (a–c)) and EGFP-emerin fusion protein (Panel <b>A</b> (d–f) and Panel <b>B</b>). After 48 h, cells were stained for emerin, tubulin (Panel A) and also lamin A (Ac, B). Fluorescence of the EGFP alone and fusion protein was used to detect the location of a transfected protein (green). Panel <b>A</b> (a–c) demonstrates a typical, dispersed location of GFP protein in transfected cells in interphase and mitotis. Arrows indicate the location of centrosomes and mitotic spindle. Note (b,c) the location of membranes (visualized by emerin staining), emerin and tubulin in the center (b) indicated by an arrow with nice colocalization between emerin and tubulin while EGFP fills the entire space. See also <a href="#app1-cells-08-00240" class="html-app">Figure S2d</a> for the similar location of emerin (and LAP2β) compared to membranes. Panel <b>A</b> (d–f) demonstrates typical distribution and level of the emerin-GFP fusion protein in transfected cells. In cells transfected with plasmid coding for the fusion protein EGFP-emerin (E1–254) staining for emerin and fusion protein signal (EGFP fluorescence) colocalizes nicely. In cells with a higher level of expression of a fusion protein, deposits of overexpressed emerin protein appear which recruit tubulin to these deposits if present at a high level (see arrowheads in Panel A, d). Note also frequent deformations of nuclear shape in cells overexpressing emerin fusion protein. At prophase (e,f) emerin is still located at the NE but a fraction of emerin associates with microtubules and centrosomes entering the nuclear space (arrows). Arrowhead points to one of the mitotic spindle microtubules associated with emerin (see also Panel <b>B</b>, d,e and <a href="#cells-08-00240-f003" class="html-fig">Figure 3</a>A, c for comparison). Panel B (a–e) demonstrates typical EGFP-emerin (E1–254) distribution together with lamin A and tubulin staining in mitotic cells. Arrows point to the location of centrosomes and spindle poles. Arrowheads point to the NE invaginations with emerin (d,e), which gradually lost its association with polymerized nuclear lamina as judged by weakening lamin A staining (see also Panel A, e,f and <a href="#cells-08-00240-f003" class="html-fig">Figure 3</a>A, c for comparison). Note the emerin fraction at the center of the nuclear space in Panel Bc and the disappearing fraction of internal lamin A in this space (see also <a href="#app1-cells-08-00240" class="html-app">Figure S2</a>, d for comparison). Note the higher level of transfected emerin associated with mitotic spindle microtubules, which may result from the saturation of “normal” binding sites for emerin and competing for other binding sites. Single Z-section (1.0 μm) centered at centrosomes (mitotic spindle) is shown. Scale bar, 10 μm.</p>
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<p>Overexpression of entire emerin and emerin fragments containing different domains in HeLa cells. Depending on the protein fragment introduced into the cell, we observed different effects manifested by disorder in the process of nuclear reassembly, maintenance of nuclear shape, and the microtubule network. For details, see main text. HeLa cells were transfected with plasmids coding for GFP fusion proteins (E70, E176, E73-254, or E254), placed on coverslips, fixed with 4% PFA, and stained with antibodies against emerin (red, <b>a</b>,<b>g</b>,<b>h</b>), pericentrin (red, <b>c</b>–<b>f</b>,<b>i</b>–<b>l</b>), β-tubulin (yellow, <b>a</b>–<b>d</b>, <b>g</b>–<b>j</b>), and lamin A/C (yellow, <b>e</b>,<b>f</b>,<b>k</b>,<b>l</b>). <b>a</b>,<b>b</b>: -arrows in a,b point the aberrant nuclei lacking endogenous emerin; arrowheads point the endogenous cytoplasmic emerin fraction. <b>c</b>–<b>l</b>: -arrowheads indicate the location of centrosomes; circles define the regions with multiple staining for pericentrin; boxes define the regions with extra nuclear DNA/chromatin. Single Z-stacks 1.5 μm. Scale bar, 5 μm.</p>
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<p>The effect of overexpression of emerin deletion mutants on the HeLa cell phenotype and cell cycle. Overexpression of emerin fragments induces the three most common atypical phenotypes, indicated as abnormal (<b>A</b>), “cut” (<b>B</b>), and apoptotic (<b>C</b>). Cells transfected with GFP-tagged emerin mutant (green) were stained for DNA (blue) and lamins A/C (red). Single confocal sections (1.5 μm) through the center of cells are shown. Bar, 5 μm. Only merged images are shown. (<b>D</b>) The results of manual counting and statistical analysis of phenotype frequency in untransfected cells (nt) and those transfected with the full-length emerin construct (E254) or emerin mutants (E70, E176, or E70–140). For the abnormal phenotypes, there were statistically significant differences (<span class="html-italic">t</span>-test &lt; 0.05) between nt and all emerin constructs as well as for E254 and each emerin mutant. For “cut” and apoptotic phenotypes, only frequencies of nt versus all emerin constructs were significantly different. (<b>E</b>) Histogram showing cell cycle distribution for untransfected HeLa cells and those transfected with E254, E70, E176, or E70–140 constructs, based on flow cytometry data. Fixed cells were stained for propidium iodide and analyzed using flow cytometry. Apart from G1, S, and G2/M phases, low DNA (apoptotic) and high DNA (polyploidic) fractions also were distinguished. Overall, cells transfected with emerin mutants showed slightly decreased counts in G2/M phase, without increases in apoptotic cells.</p>
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<p>Selected different “emerin-null” patient cells express emerin mutant protein and show abnormal emerin location. Emerin distribution and presence in NHDF and fibroblast obtained from patients with EDMD1. EDMD1 patient cells have shortened emerin with abnormal localization or lower levels. (<b>A</b>) Immunofluorescence staining with antibodies recognizing 66–254 aa of emerin indicates changes in the distribution of this protein (emerin diminishing in nuclear rim) in patients bearing mutations c.187 + 1G &gt; A (P2) and c.450insG (P6) in comparison to normal cells. Mutants of emerin do not affect the shape of nuclei (staining for lamin A) or actin filament structure. (<b>B</b>) Staining with antibodies recognizing the N-terminus end of emerin indicates lack of epitope in the N-terminal fragment in a patient sample with the mutation c.187 + 1G &gt; A (P2) and shows proper but weaker staining of emerin in the nuclear envelope in a patient sample with the mutation c.450insG (P6), as in the control; the difference in staining pattern between these two antibodies may be because of epitope availability [<a href="#B80-cells-08-00240" class="html-bibr">80</a>] (<b>C</b>) Western blot analysis using antibodies recognizing 66–254 aa of emerin shows the presence of truncated proteins in both patients; the level of emerin is lower than in the control. (<b>D</b>) Western blot analysis using antibodies recognizing the N-terminal end of emerin shows the low level of truncated proteins in a c.450insG (P6) patient sample; emerin is not detected in a c.187 + 1G &gt; A (P2) patient sample.</p>
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14 pages, 2322 KiB  
Article
TRSWA-BP Neural Network for Dynamic Wind Power Forecasting Based on Entropy Evaluation
by Shuangxin Wang, Xin Zhao, Meng Li and Hong Wang
Entropy 2018, 20(4), 283; https://doi.org/10.3390/e20040283 - 13 Apr 2018
Cited by 6 | Viewed by 5513
Abstract
The performance evaluation of wind power forecasting under commercially operating circumstances is critical to a wide range of decision-making situations, yet difficult because of its stochastic nature. This paper firstly introduces a novel TRSWA-BP neural network, of which learning process is based on [...] Read more.
The performance evaluation of wind power forecasting under commercially operating circumstances is critical to a wide range of decision-making situations, yet difficult because of its stochastic nature. This paper firstly introduces a novel TRSWA-BP neural network, of which learning process is based on an efficiency tabu, real-coded, small-world optimization algorithm (TRSWA). In order to deal with the strong volatility and stochastic behavior of the wind power sequence, three forecasting models of the TRSWA-BP are presented, which are combined with EMD (empirical mode decomposition), PSR (phase space reconstruction), and EMD-based PSR. The error sequences of the above methods are then proved to have non-Gaussian properties, and a novel criterion of normalized Renyi’s quadratic entropy (NRQE) is proposed, which can evaluate their dynamic predicted accuracy. Finally, illustrative predictions of the next 1, 4, 6, and 24 h time-scales are examined by historical wind power data, under different evaluations. From the results, we can observe that not only do the proposed models effectively revise the error due to the fluctuation and multi-fractal property of wind power, but also that the NRQE can reserve its feasible assessment upon the stochastic predicted error. Full article
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<p>Five-input structure of the TRSWA-BP and empirical mode decomposition (EMD)-based phase space reconstruction (PSR).</p>
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<p>Probability density function (PDF) with non-Gaussian property of the forecasted power error.</p>
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<p>PDF calculations of the same <span class="html-italic">H<sub>d</sub></span>(<span class="html-italic">e</span>) based on different errors <span class="html-italic">e<sub>A</sub></span> and <span class="html-italic">e<sub>B</sub></span> in a non-Gaussian distribution. (<b>a</b>) A PDF distribution obtained by the discretized Renyi’s quadratic entropy (RQE); (<b>b</b>) <span class="html-italic">H<sub>d</sub></span>(<span class="html-italic">e</span>) is a monotone decreasing of <span class="html-italic">f<sub>d</sub></span>(<span class="html-italic">e</span>).</p>
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<p>PDFs of the same positive and negative errors.</p>
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<p>PDFs of the 10 h predicted errors, based on the model of TRSWA-BP.</p>
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<p>PDFs of the 10 h predicted errors, based on the model of BP.</p>
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<p>PDFs of the particular instant errors, based on two prediction methods. (<b>a</b>) At the 6 h instant; (<b>b</b>) at the 8 h instant.</p>
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<p>Expected NRQEs of the proposed networks.</p>
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<p>Wind power control or dispatching system with NRQE evaluation.</p>
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