Interlaboratory Validation of a Detection Method for Hepatitis E Virus RNA in Pig Liver
<p>Flowchart of the method for the detection of HEV-RNA in liver. The procedure consists of three consecutive modules: (1) sample homogenization, (2) extraction of the RNA and (3) the detection of the viral HEV-RNA by real time RT-PCR.</p> "> Figure 2
<p>Pre-testing of the original material used in the ring trial using the described method for detection of HEV-RNA in pig liver. One positive control (PC, previously HEV positive-tested RNA of a liver sample) and four aliquots each of the contamination levels D<sub>0</sub> to D<sub>2</sub> were analyzed. The <span class="html-italic">Cq</span> values derived by the HEV-specific real-time RT-PCR are shown. A <span class="html-italic">Cq</span> value of 50 indicates a negative result.</p> "> Figure 3
<p>Average MS2 recovery rates (with standard deviations) for the individual laboratories for all analyzed undiluted samples. * laboratory no. 9 was excluded from the final data analysis.</p> "> Figure 4
<p>Average MS2 recovery rates (with standard deviations) for the individual laboratories for all analyzed diluted (1:10) samples. * laboratory no. 9 was excluded from the final data analysis.</p> "> Figure 5
<p>Overview of the reported results for the three different contamination levels D<sub>0</sub>, D<sub>1</sub> and D<sub>2</sub> for all participating laboratories (four samples for each contamination level per laboratory). (<b>A</b>): Contamination level D<sub>0</sub> (HEV-negative). (<b>B</b>): Contamination level D<sub>1</sub> (high HEV contamination) (<b>C</b>): Contamination level D<sub>2</sub> (low HEV contamination near the detection limit). The <span class="html-italic">Cq</span> values derived by the HEV-specific real-time RT-PCR are shown. A <span class="html-italic">Cq</span> value of 50 indicates a negative result. * laboratory no. 9 was excluded from the final data analysis.</p> ">
Abstract
:1. Introduction
2. Materials and Methods
2.1. Selection of Liver Samples and HEV-RNA Quantification Using RT-Droplet Digital PCR (RT-ddPCR)
2.2. Method for the Detection of HEV in Liver
2.3. Collaborative Study for Method Validation
2.4. Data Analysis
3. Results
3.1. Pre-Testing of the Samples
3.2. Collaborative Study
3.3. Data Analysis and Calculation of Method Performance Parameters
4. Discussion
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Contamination Level | GE/5 µL RNA (as Used in PCR) | GE/g Liver Homogenate | Number of Samples/Lab | Total Number of Samples/Study |
---|---|---|---|---|
[D0] | 0 | 0 | 4 | 44 |
[D1] highly contaminated | 5860 | 2.5 × 106 | 4 | 44 |
[D2] lowly contaminated | 7.4 | 3.2 × 103 | 4 | 44 |
∑: 12 | ∑: 132 | |||
Positive control | 900 | 3.9 × 105 | 1 | 11 |
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Trojnar, E.; Contzen, M.; Moor, D.; Carl, A.; Burkhardt, S.; Kilwinski, J.; Berghof-Jäger, K.; Mormann, S.; Schotte, U.; Kontek, A.; et al. Interlaboratory Validation of a Detection Method for Hepatitis E Virus RNA in Pig Liver. Microorganisms 2020, 8, 1460. https://doi.org/10.3390/microorganisms8101460
Trojnar E, Contzen M, Moor D, Carl A, Burkhardt S, Kilwinski J, Berghof-Jäger K, Mormann S, Schotte U, Kontek A, et al. Interlaboratory Validation of a Detection Method for Hepatitis E Virus RNA in Pig Liver. Microorganisms. 2020; 8(10):1460. https://doi.org/10.3390/microorganisms8101460
Chicago/Turabian StyleTrojnar, Eva, Matthias Contzen, Dominik Moor, Anja Carl, Sabine Burkhardt, Jochen Kilwinski, Kornelia Berghof-Jäger, Sascha Mormann, Ulrich Schotte, Anne Kontek, and et al. 2020. "Interlaboratory Validation of a Detection Method for Hepatitis E Virus RNA in Pig Liver" Microorganisms 8, no. 10: 1460. https://doi.org/10.3390/microorganisms8101460
APA StyleTrojnar, E., Contzen, M., Moor, D., Carl, A., Burkhardt, S., Kilwinski, J., Berghof-Jäger, K., Mormann, S., Schotte, U., Kontek, A., Althof, N., Mäde, D., & Johne, R. (2020). Interlaboratory Validation of a Detection Method for Hepatitis E Virus RNA in Pig Liver. Microorganisms, 8(10), 1460. https://doi.org/10.3390/microorganisms8101460