The Influenza NS1 Protein: What Do We Know in Equine Influenza Virus Pathogenesis?
<p>Predicted amino acid sequence of equine influenza strain A/equine/Uruguay/63 (H3N8) (GenBank accession number: CY032425). The N-terminal RNA-binding domain (residues 1–73) and C-terminal “effector” domain (residues 74–230) are indicated by the shaded bars above the amino acid sequence (red and green, respectively), with vertical lines marking every tenth amino acid. The green and blue text shading indicates the alpha and beta helices, respectively. The asterisk marks the position of the 11-amino-acid truncation seen in many recent equine influenza H3N8 isolates and the PDZ-binding domain (ESEV) is indicated in bold text.</p> "> Figure 2
<p>Phylogenetic tree of equine influenza non-structural NS1 proteins. Amino acid sequences of 77 equine influenza virus NS1 proteins were downloaded from the Influenza Research Database and the phylogeny inferred using Phylogeny.fr [<a href="#B40-pathogens-05-00057" class="html-bibr">40</a>]. Clusters of strains labeled with Roman numerals are described in the text. Outlier strains are individually labeled.</p> "> Figure 3
<p>Cartoon representations of NS1 structure. Amino acid changes typically found in Florida sub-lineage viruses are indicated in: (<b>A</b>) the RNA-binding domain in red (amino acid, aa44), blue (aa59) and green (aa71); and (<b>B</b>) the effector domain in red (aa86). Images were created using RasMol for Windows v2.7.5.2 and PDB files 1NS1 (<b>A</b>) and 3DR (<b>B</b>).</p> ">
Abstract
:1. Introduction
2. Influenza NS1 Protein Inhibition of Host Antiviral Response
3. What Do We Know about Equine Influenza NS1?
4. Potential Role of NS1 in Equine Pathology and Inter-Species Transmission
5. Potential to Apply Knowledge about NS1 for Prevention and Control of Influenza
6. Concluding Remarks
Author Contributions
Conflicts of Interest
Abbreviations
CPSF | Cleavage and Polyadenylation Specific Factor |
eIF4G | eukaryotic translation initiation factor 4GI |
EIV | equine influenza virus |
HA | hemagglutinin |
IFN | interferon |
IL | interleukin |
NA | neuraminidase |
NES | nuclear export signal |
NLS | nuclear localization signal |
NS1 | non-structural protein 1 |
OAS | 2′,5′-oligoadenylate synthetase |
PABPII | poly-A binding protein II. |
PAMPs | pathogen-associated molecular patterns |
PI3K | phosphoinoside-3-kinase |
PKR | protein kinase R |
RIG-I | retinoic acid-inducible gene product I |
TNF | tumor necrosis factor |
TRIM | tripartite motif |
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Barba, M.; Daly, J.M. The Influenza NS1 Protein: What Do We Know in Equine Influenza Virus Pathogenesis? Pathogens 2016, 5, 57. https://doi.org/10.3390/pathogens5030057
Barba M, Daly JM. The Influenza NS1 Protein: What Do We Know in Equine Influenza Virus Pathogenesis? Pathogens. 2016; 5(3):57. https://doi.org/10.3390/pathogens5030057
Chicago/Turabian StyleBarba, Marta, and Janet M. Daly. 2016. "The Influenza NS1 Protein: What Do We Know in Equine Influenza Virus Pathogenesis?" Pathogens 5, no. 3: 57. https://doi.org/10.3390/pathogens5030057
APA StyleBarba, M., & Daly, J. M. (2016). The Influenza NS1 Protein: What Do We Know in Equine Influenza Virus Pathogenesis? Pathogens, 5(3), 57. https://doi.org/10.3390/pathogens5030057