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KEGG   Xenopus laevis (African clawed frog): 108699915
Entry
108699915         CDS       T01010                                 
Symbol
rxra.S
Name
(RefSeq) retinoic acid receptor RXR-alpha-like isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03320  PPAR signaling pathway
xla04148  Efferocytosis
xla04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:xla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    108699915 (rxra.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xla03000]
    108699915 (rxra.S)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:xla03310]
    108699915 (rxra.S)
Transcription factors [BR:xla03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    108699915 (rxra.S)
Nuclear receptors [BR:xla03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   108699915 (rxra.S)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 108699915
NCBI-ProteinID: XP_018088079
Xenbase: XB-GENE-17336574
UniProt: A0A974C2D8 A0A1L8F189
Position
8S:complement(30174023..30260504)
AA seq 483 aa
MDTKHFLPLDFSTQVNSSSLSSSGLRGSMTAPLLHPSLGNSGINSSLGSPTQLSSPLSSP
LNGMGPPFSVINPPLGPSMALPSTPGLGYGTGSPQLHSPMNSISSTEDIKPPLGINGILK
VPAHASGPMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCL
IDKRQRNRCQYCRYQKCLAMGMKREGMEHHPSQHSRDLRCQTEQAVQEERQRGKERNENE
VESSSSANEDMPVEKILEAELAVEPKTETYIEANMGLSPNSPSDPVTNICQAADKQLFTL
VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHS
AGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYAS
LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH
QMT
NT seq 1452 nt   +upstreamnt  +downstreamnt
atggacaccaagcatttcctgccgctggatttttccacccaggtaaactcctcgtcctta
agctcctctggcctccgcgggtctatgactgcccctctgctccatccgtccctcggtaac
tctgggataaacagctccctgggttcccccactcagctgtcctctcccctcagctccccc
ctcaatggaatgggcccacctttctccgttatcaaccctcctctgggcccatcaatggcc
cttccatctacgcccggcctcggctatggaacaggcagccctcagcttcattcccccatg
aactcaatcagcagcacagaagacatcaagcctcctctgggaatcaacggcatccttaaa
gtaccagcacatgcctcaggacctatggcctctttcactaagcacatctgcgccatctgc
ggagacagatcttcaggcaaacattacggggtttacagctgcgagggctgcaagggtttt
ttcaagcggacggtgcggaaggacctgacttacacgtgcagggataacaaggactgtttg
attgacaagcggcagaggaaccggtgccagtactgccggtaccagaaatgcctggcgatg
ggcatgaagagagaagggatggaacaccatccatcccagcattccagagatctgcgatgt
cagacggaacaagcagtccaggaggagagacagaggggaaaggaacgaaatgaaaatgag
gtggagagtagcagcagtgccaacgaggacatgccggtggagaagatccttgaggcggag
cttgcggtggaaccaaagacagagacgtacattgaggctaacatgggcctttctcccaac
tctcccagcgaccctgttaccaacatttgccaagcagcagacaagcagctcttcacactg
gtggaatgggcaaagagaatcccacatttctcagatctgccgctggatgaccaagttatc
cttcttagggcagggtggaacgagctcctcatagcctcattttcacatcggtcgatagcc
gtcaaagatggaattcttcttgctacgggactccatgtacatcggaacagcgctcacagt
gcaggagtcggtgctatctttgatagggtcctcaccgagctggtgtccaaaatgagagac
atgcagatggacaaaacagaactcggttgcttacgagcaatagtgctcttcaacccagac
tcgaaaggtctctcgaacccctcagaggttgaggctctccgagagaaggtttatgcatcg
ctagaggcctactgcaaacagaaataccccgaacagcccgggaggtttgctaaacttctc
ctacgcctgccagctttacgatctattggcctcaaatgtctggaacacctttttttcttc
aaactaataggagacacaccaatcgacactttcttaatggagatgctggaagcccctcac
caaatgacttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (34)   

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