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KEGG   Xiphophorus hellerii (green swordtail): 116735191
Entry
116735191         CDS       T07363                                 
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha B-like
  KO
K04837  voltage-gated sodium channel type IV alpha
Organism
xhe  Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:xhe04040]
    116735191
Ion channels [BR:xhe04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   116735191
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc IQ_SCN5A_C PKD_channel GPHH HORMA Dynamin-like_hel_bact IQ
Other DBs
NCBI-GeneID: 116735191
NCBI-ProteinID: XP_032442763
Position
16:2601271..2620040
AA seq 1721 aa
MVPLLPPVGTEVFRCFTPASLEKIQQKHEAEAKQQQIRKDKNIKIAKKYLPKPAGDLEDG
KPLPLFYEDRAQEFLNIPLEDMDPFYQSHKTFIVLSKGKTIYRFNAEPTCYLLSPFNSLR
IFSIRILIHSLFSFFIMATILTDCVFMTMSNPPAWSKTVEYVVMVIYTFEVIIKVLSRGF
CVGDFTYLRNPWNWLEFMVINMIYLAEFVHFGNVSALRPFRVLRILKIITVFSGLRTIFG
AVIQSVKKLRDAMLLTFFFLSVFALIGLQLFMGDLRQKCVFTLSSDSNTSGAFNISSYEN
NGSDFDFYEYINNPENHYYPPGQRDALLCGNSSDAGTCPDGYMCLKAGRNPNYGYTSYDS
FSWAFLSLFRLMTQDFWENIFHMTLRAAGKTYIIFFVVVIFLGSFYLINLILAVVVMAYA
EQNRANIVKAKQREKEYARILKELKKREEKVQCDGEKASITFQYKAECLFSLHQTVQRAT
PLEKNGSASHEEDATRDDLEDNQKPRSSRWYVFADTFLKWNCCGCWRWLKKLLHTTVMDP
FVDVAITMCIVFYTILMATEHYYMTEKLLQLIEIGNLVITGILTAEMVLKILAMDPYHYF
QEGWNIFDSIIVTMSLVELGLADVYSVVWRPLRLIRVFKLAMSWPAFKVLIKIIRNSLRA
LGNLMLVLAIIVFIFTVFGMQLFEKSYKDCVCLIAQDCELPRWHMSDFFHAFLVIFRILC
GEWIETMWDCMQVAGKPMCLIVYMMVLVIGKLVVLNLFIALLLSSFSGDNLAVTEDEGEN
NLQIVINRISRGTARTKAWFWTLVGKKTNVNSDVNDVTCEEGDKSKEVLPLTIVNSEQSV
VKVQDPKVTKICSEAKSDSEISKNKNDEDNEEDDQDEQLAQGDKSLDCSDIERFPVISIV
KEAEDTPDDCFTEKCYSCCPCLDIDTSKSIGRIWLYIRKTCITIVESKYFKSFIITVILL
SSAALAFEDIYIEQRRDIKIILEYADQVFNFVFVVEIILKLGAYGCKTFFSSAWCWLDFL
IADVSLVLLSASILGYSELGAIKSLRTLRALRPLRVLSCFEGLRVMVNELVGAIPSIFNV
LLICLVLWLIFSIMGVNLFAGKFFYCFNETSEEYFSPEEVNNKSQCLDLFEKGFSEARWK
ISKINFDSVVMGCLSLLQVSTFKGWLDIMYSAVDSREVESQPMYESNLYMYMYFVCFIIF
GSFFPFCLFITSLINFNQRKPKPIEIEPPIKWIPREPPSRPTNKFQGLVFDLVTNPFFDI
LIMVLICLYTLAMMVETDEQSPEKEEILYWVNLVFIMIFSIECCLKIIALRKHYCYDGWN
IFDLVVVILCIVGFVVADIIEKYFVSPTLFRVIRLARIGLILRLIHRAKGIRKLLFALRK
SLPAVFNLCILLFIIMFVFSIFGMSNFAYVKKDSMIDDMINFETFGNSMISMFTITTLAG
WDGLLSPILNTPPDCDPDFENPGTTVRGNCASPAAGIVFFTLYVIVSFLVVVNIHITIIL
EIFNVAAEESTNKLSEYDIDMFYETWEKFDPQASQFIHYSELSDLYDALPYPLRIPKPNT
INLLQMDLPLVQGDRVHCLDVLLALTEEVFGESQATEELKSTVEWKFMANIASEESLRPI
VSTFRKKHEEMAATAIQRAYRRHVQQRVNKQESYQXREKPEGQAARGTICLHQRQRDFSV
NQWISCTEAVLKLFNRRLAFYQMRKVIPNFRYPITEKKTDL
NT seq 5166 nt   +upstreamnt  +downstreamnt
atggtccctctgctgccccctgttggtacggaggtgtttagatgcttcacaccagcctca
ctggagaaaattcagcaaaagcatgaagctgaagcgaagcagcagcaaatcagaaaagat
aagaacatcaagatagcaaagaagtatcttcctaaaccagcaggtgatctggaggatggg
aagcccctcccgttgttttatgaagaccgggcccaggagtttctcaacatcccattggag
gacatggaccccttctaccaatcacacaagacctttatcgttctcagtaaaggaaaaacc
atctacaggttcaacgccgaaccaacttgttatctgctgagtcccttcaactctctgagg
atcttctccatcaggatcctcatccattctttattcagttttttcatcatggcgactatc
ctgactgactgtgtgttcatgaccatgagtaaccctccagcatggagcaagacagtggaa
tatgttgtcatggtgatctacacgtttgaggtaatcatcaaagttttatccagagggttc
tgtgtgggagacttcacctacctcagaaacccgtggaactggctggagttcatggtcatc
aacatgatatacctagcagagtttgtccactttggaaatgtatcagcactgaggccattc
agagttcttcgaatcctgaaaatcatcacagtattctctggtttaaggacaatctttggg
gctgtcatccagtcagtgaagaagctgcgtgatgccatgcttctgaccttcttttttctc
agtgtctttgctctgattggtttacagctttttatgggagacctcagacaaaaatgcgtt
tttaccctgtcaagcgacagcaacacatcaggagctttcaacatcagttcctacgaaaac
aatggaagtgacttcgatttttacgagtacattaacaacccagaaaatcactactaccca
cctggtcaacgtgatgccctgctgtgtggaaacagctctgatgcagggacctgtccagat
ggatacatgtgtctgaaggcagggagaaacccaaactatggatataccagctacgacagt
ttcagctgggcgtttctgtctctgttcagactcatgactcaggacttctgggaaaatatc
ttccacatgacgctgcgagctgcaggtaaaacctacatcatcttcttcgtggtcgtcatc
ttccttggttccttctacctcattaatctcatcctggcggtggttgtcatggcgtacgct
gagcaaaacagggctaacatcgtcaaggccaaacagagagaaaaagagtatgcccgcatc
cttaaggagttaaagaagagagaagagaaggtacaatgtgatggagagaaagcttccatc
acttttcagtacaaagctgaatgtttgttttctttacatcagacggtccagagggcaacg
cccttggagaaaaacggctctgcatcacatgaggaagatgctaccagggatgacctagag
gacaaccagaagccacgttcttcacgctggtacgtctttgctgacaccttcctgaagtgg
aactgttgtggctgttggagatggttgaaaaagcttctgcatactactgtcatggatcca
tttgtggacgtcgccatcaccatgtgcattgtcttctacactatcttgatggccactgag
cactattatatgactgagaagcttctacagcttatcgaaattggaaacctggtgattaca
gggatcttaacagctgagatggttctcaaaattctggcgatggatccatatcattacttt
caggaaggctggaatatctttgatagcatcatcgtcaccatgagtctggtggagctagga
ctggctgatgtttatagtgttgtgtggcggcccctcagattgataagagtgtttaagcta
gccatgtcgtggccagctttcaaggtgttgataaagattatccgcaactctttgagagcc
ctggggaacttgatgctggttctcgccatcattgtcttcatcttcactgtatttgggatg
cagttgtttgaaaagagctacaaagactgtgtctgcctcattgcccaggactgtgagctt
cctcgctggcacatgagcgacttttttcatgccttcctcgtcatcttcaggattctgtgt
ggcgaatggattgagacaatgtgggactgtatgcaagttgcagggaagcctatgtgtctg
attgtctacatgatggtactggtgattggaaaactagtggttctgaatctgttcatagcc
ttgctgctaagctcattcagtggggataatcttgcagttacagaagatgaaggagaaaat
aatctccagattgtgataaaccggatcagcaggggtacagcaaggactaaggcctggttc
tggactttggtgggaaagaaaacaaacgtaaactcagatgtaaatgatgtaacctgtgaa
gaaggtgacaagtcaaaggaagttttacctctgacaattgtgaattcagagcagtcggtg
gtaaaagtccaagaccccaaagtaaccaaaatctgctctgaagccaagtctgactctgag
atatctaaaaataaaaatgatgaagataatgaggaggatgaccaagatgaacagcttgca
caaggtgataagtctttggactgcagcgacatcgagagatttcctgtaatctcaatagta
aaagaggcagaagacactcctgatgattgtttcacagaaaagtgttacagttgctgtcca
tgcctggatatagacacatccaagagcataggaaggatctggttatatatcaggaaaact
tgcatcaccatcgtagagtccaagtactttaagtcattcatcatcaccgtgatcctgctg
agcagtgcagccctggcctttgaggacatctacattgagcagcgccgggacatcaagata
attctggaatatgcagatcaggttttcaactttgtgtttgtggtggagataattctcaag
ttgggtgcctacggatgtaaaaccttcttctccagtgcctggtgctggttggattttctc
attgcagatgtttctctggtgttactgtcagcaagcatcctgggatactctgagctggga
gctatcaaatctctgaggactctgagagcattgagaccccttagagtcttgtcttgcttt
gagggcttgagggtgatggttaatgaattggttggagccatcccctccatcttcaacgtg
ctgctaatctgtctggtcctctggctcatctttagcatcatgggtgtgaacctgtttgca
gggaagtttttttactgcttcaacgaaacatcagaggagtatttctctcctgaggaagtc
aacaataaatcccagtgtctcgatttgtttgagaagggcttctccgaggctcgctggaag
atctcaaagatcaactttgacagcgttgtgatgggctgcctgtctctgctgcaagtgtcc
acatttaaaggctggctggacatcatgtattcagcggtggactccagagaggtggagtcc
cagccaatgtatgagagcaacctgtacatgtacatgtactttgtctgcttcatcatcttt
ggctccttctttcctttctgcctcttcatcacctcactcatcaacttcaaccagcgtaaa
ccaaagcctatagaaatagaacccccgataaaatggatccccagagaacctccttcccga
ccgacaaacaagtttcagggtctagtcttcgaccttgtgaccaatccattttttgacatt
ctcatcatggtgttgatctgcctttatacgttggcgatgatggtggaaacagacgagcag
agtcctgagaaggaagaaatcctgtactgggtgaacctcgttttcatcatgatcttcagc
atagagtgctgtctcaaaattatcgctctacgaaagcactactgttatgatgggtggaac
atatttgaccttgtggtggttatactgtgtattgttggttttgttgttgctgatatcatc
gagaagtacttcgtttctcccactctcttccgtgtgatccgactggctcgcattggcctg
atccttcgtctcattcacagagctaagggaattagaaagctgttgtttgcattaagaaag
tctcttccagctgtattcaacctatgcatcctcctcttcatcatcatgtttgtcttctcc
atctttgggatgtctaattttgcttacgtgaagaaggacagcatgattgatgacatgatt
aactttgaaacctttgggaacagtatgatctccatgtttacgatcaccacattagctgga
tgggacggtcttctctctcccatcttgaacacacctccagactgtgatccagactttgaa
aacccaggcacaactgtcaggggcaactgtgccagccctgcagcaggtattgtcttcttt
actttgtatgtcattgtgtcctttctggtggtggtcaatatacacatcaccatcatcctg
gagatatttaacgtcgctgcagaggagagcaccaacaaactatctgagtacgacattgac
atgttctatgaaacctgggagaagtttgacccacaagcttcgcaatttattcactacagt
gagctgtcagatctctatgatgctctaccgtatcctctcaggattcccaaacccaacacc
atcaacctgttacaaatggacctgcctttggttcaaggagacagggtccactgtctggac
gtcctgctagctctcactgaagaggtttttggtgaatctcaggcaacggaggaactaaag
tctactgtggagtggaagttcatggccaacattgcttcagaggagagtttaagaccaatc
gtcagcacctttcgaaagaaacacgaggagatggcagcgacagcgatccagagagcctac
aggagacacgttcagcagcgagtgaacaagcaggagtcctaccagtaaagggaaaagcca
gagggacaggcggccagggggacaatctgtctccaccagagacagagggatttctctgta
aaccaatggatcagctgtacggaggcagtgttaaaactctttaacagaaggcttgccttt
taccaaatgagaaaagtaattccaaactttagataccctataactgagaaaaaaacagac
ctctag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (12)   

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