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KEGG   Taeniopygia guttata (zebra finch): 100224584
Entry
100224584         CDS       T01082                                 
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
  KO
K04837  voltage-gated sodium channel type IV alpha
Organism
tgu  Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:tgu04040]
    100224584 (SCN4A)
Ion channels [BR:tgu04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   100224584 (SCN4A)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc IQ_SCN5A_C PKD_channel IQ GPHH
Other DBs
NCBI-GeneID: 100224584
NCBI-ProteinID: XP_030112168
Position
27:5326556..5360110
AA seq 1847 aa
MAGLPHIPGPENLRPFTPASLAAIEQRMAEAEALRIKRQQVEMPEEEEIKPSSDLEAGKN
LPLIYGDPPVELIGTPLEDLDPFYKDKKTFIVLNKGKSIFRFSATPALYMLGPFNPIRRG
AIKVLIHSLFSMFIMITILTNCVFMTMSNPPAWSKNVEYAFTGIYTFESLIKILSRGFCI
DDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPPPNSTFLQDLGPDNDTSAN
STFYGFMDDFTGNFTGNFTGNFTGNSTFDFEAYISDEANFYFLEGALDALLCGNSSDAGK
CPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDFWENLFQLTLRAAGKTYMIFFV
VVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQLMEQLKKQQEEQERLLQE
RSSSSNSLPSSVAGKGHDSDLNSDQDKAKDCNGQVVPKITLQRSDTVIDFNLTHEPEKPD
LNHLTVGNQDGPGLEKRVGSAISVISNAVEELEEAHQKCPPWWYKFAHTFLVWNCCRPWV
KLKEFVKLVVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEM
VLKLIALDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYIECVCKISVDCTLPRWHMN
DFFHSFLIVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSF
SADSLAASDDDGEMNNLQIAIGRITRGIAFTKASLLALLRRLWKGKKVAPEEEQEPSKRD
NSVLNHVDTALEPKSGYLDGIMGKEHIFMDELDHMNFINNPNLTVQVPIASEESDLYEET
STQSDTEDTTKGVPLNPLSSDNASSVCSTVDYKPPAPEEEEVAEVAEESNEPEECFTEGC
VKRFPCLYVDITSEKGRIWWNLRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQR
KVIRTILEYADKVFSYIFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLVSLTANWLG
YSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMG
VNLFAGKYYRCVNTTTGELFDIDVVNNRSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLL
QVATFKGWMDIMYAAVDSREIEEQPQYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNF
NQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGKVFDFVTKQVFDIT
IMILICLNMVTMMVETDDQSELKTSVLYKINLVFIVIFTGECVLKMFALRHYFFTVGWNI
FDFVVVILSILGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMS
LPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGW
DGLLNPILNSGPPDCDPELENPGSLVKGDCGNPAIGIFFFCSYIIISFLIVVNMYIAIIL
ENFSVATEESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLRVPKPNK
IKLITMDLPMVAGDKIHCLDILFALTKEVLGDSGEMDALKATMEEKFMAANPSKVSYEPI
TTTLKRKHEEVCATKIQRAFRRYLLRRSVKQASYMYRHSQDTLGEDAPEKEGLIATKMQE
IYGNSGTDVDTAPALGLKPIPSSETPQDAPEEAQAWGKEHVVKESLV
NT seq 5544 nt   +upstreamnt  +downstreamnt
atggccggcctgccgcacatcccgggccccgagaacctgcgccccttcaccccggcctcg
ctggccgccatcgagcagcgcatggccgaggccgaggcgctccggataaagcggcagcag
gtggagatgcctgaggaagaggagatcaagcccagcagtgacctggaggccggcaagaac
ttgcccctcatctatggtgacccacccgtggagctcatcgggacccccctggaggacctg
gaccctttctacaaggacaagaagacgttcatagtcctcaacaagggcaagtccatcttc
cgcttctcagccacccctgccctctacatgctggggcccttcaaccccatccgcagagga
gccatcaaagtcctcatccattcattattcagcatgttcatcatgatcaccattttaacc
aactgcgtgtttatgacgatgagcaaccctccagcatggtccaagaacgtggaatacgcc
ttcactggcatctacaccttcgagtctctcatcaagatcctgtcgagaggcttctgcatc
gacgacttcacattcctgcgggacccctggaactggctggacttcatggtcatctccatg
gcctacattaccgagttcgtggacctggggaacatctccgctctcaggaccttccgtgtc
ctccgtgccttgaaaaccatcacggtgataccagggctgaagacgatcgtgggggctctg
atccagtcagtgaagaagctctcggacgtgatgatcctcacggttttctgcctgagcgtc
ttcgctctcatcggcctccagctcttcatgggcaacctgcggcagaagtgcgtgcgctgg
cctccccccaacagcaccttcctgcaggacctggggccggacaacgacacctcggccaac
tcaaccttctacggcttcatggatgacttcaccgggaacttcaccgggaacttcaccggg
aacttcaccgggaacagcacctttgacttcgaggcctacatcagtgatgaagccaatttt
tacttcctggagggagccctggacgccctgctctgcgggaacagcagcgacgctgggaag
tgccccgagggctacgagtgcatgaaggccgggaggaaccccaactatggctacaccagc
tatgacaccttcagctgggccttcctggccctcttccgcctcatgacccaggacttctgg
gagaacctcttccagctgacactgagggcagcagggaaaacctacatgatcttcttcgtg
gtggtcatcttcctgggctccttctacctcatcaacctcatcctggccgtggtggccatg
gcttatgccgagcagaacgatgccaccatgctggaggagcagcagaaggaggaggaattc
cagcagctcatggagcagctgaagaagcagcaagaggagcaggaaaggctgttgcaggag
cgctcgtccagcagcaattccctgcccagcagcgtggccgggaaggggcacgactcggac
ctcaacagtgaccaggacaaggccaaggactgcaacgggcaggtggtgcccaagatcacc
ctgcagagatccgacaccgtgattgatttcaacctcacccatgagccggagaagccagac
ctcaaccacctcactgtgggcaaccaagatgggccagggctggagaagagggtgggaagt
gctatcagtgtcatctccaacgctgtggaagagctggaagaagctcaccagaaatgccca
ccctggtggtacaaatttgcccacacattcctggtctggaattgctgccgtccatgggtg
aagctgaaggagtttgtcaagctagtggtgatggacccctttgtggatctgggcatcacc
atctgcatcgtgctcaacactctcttcatggccatggagcactaccccatgacagaagag
ttcgagaacgtgctgaccgtggggaacctggtcttcaccgggatcttcaccgcggagatg
gtcctgaagctcattgctctggatccctacgagtatttccagcagggctggaacatcttt
gacagcttcattgtcactctgagcctggtggagctgggcttggccaacgtgcaggggctc
tccgtgctccgctccttccgcctgctgagggttttcaagctggccaagtcctggcccact
ctcaacatgctcatcaagatcatcggcaactccgtgggtgccctgggcaacctcacgctg
gttttggccatcatcgtcttcatcttcgccgtggtggggatgcagctctttggcaagagc
tacatcgagtgcgtgtgcaagatctctgtggactgcaccctgccccgctggcacatgaac
gacttcttccactccttcctcatcgtcttccgcatcctctgcggggagtggatcgagacc
atgtgggactgcatggaggtggccggccagaccatgtgcctcatcgtcttcatgatggtc
atggtcatcggcaacctcgtggtgctaaacctgttcctggctctgctgctgagctccttc
agcgctgacagcctggcggcgtcggacgacgatggggagatgaacaacctgcagatcgcc
atcggccgcatcacccgcggcatcgccttcaccaaggcctcgctcctggcgctgctgcgc
cggctctggaagggcaagaaggtggcaccagaggaagaacaggagcccagcaagagggac
aactctgtgctcaaccacgtggacacggccctggagcccaagtcagggtacctggatggc
atcatgggcaaggagcacattttcatggatgagctggaccacatgaatttcatcaacaac
cccaacctgacggtgcaggtccccatcgcctctgaggagtccgacctctacgaggagacc
agcacccagtctgacaccgaggacaccaccaagggagtccctctgaaccccctgtccagc
gacaacgcctcgtccgtgtgcagcacggtggattacaaaccgcccgcgcccgaggaggag
gaggtggcagaagtggctgaggagagcaacgagcccgaggagtgtttcactgagggctgt
gtgaagaggtttccctgcctctacgtggacatcaccagtgagaaggggaggatttggtgg
aacctcaggaaaacctgcttccgcatcgtggagcacgactggtttgagaccttcatcgtc
ttcatgatcctcctcagcagtggggcactggctttcgaggacatctacatcgagcagcgc
aaggtgatccgcaccatcctggaatacgcagacaaggtcttctcctacatcttcgtcatc
gagatgttgctcaagtgggtggcctatggcttcaaggtgtacttcaccaatgcctggtgc
tggctggatttcctcatcgtggatgtgtccctggtcagcctgacagcaaactggctggga
tattccgagctaggagctatcaaatccctgcggacactgagggctctgcgacccctgcgt
gctctgtcccggtttgagggcatgagggtggtggtgaatgccctgctgggtgccatcccc
tccatcatgaacgtccttctggtctgcctcatcttctggctgatcttcagcatcatgggg
gtgaacctgttcgcagggaagtactacaggtgcgtcaacaccaccaccggggagctcttc
gacatcgacgtggtcaacaacaggagcgactgcatggccctgctccacaccaacgaggtc
agatgggtcaacgtcaaggtcaactttgacaacgtgggcttgggatacctgtccctgctg
caggtggcaaccttcaaaggctggatggacatcatgtacgcggctgtggactcacgtgag
attgaagagcagccacagtatgagatcaacctctacatgtacatctacttcgtcatcttc
ataatctttggtgccttcttcaccctgaacctcttcataggcgtcatcattgacaacttc
aaccaacagaagaaaaagtttggaggcaaagacatcttcatgacggaagagcagaagaaa
tactacaacgccatgaagaagctgggctccaagaaaccccagaagcccatccccaggcca
gcgaacaaattccaagggaaggtgtttgactttgttaccaaacaagtgtttgacatcacc
atcatgatcctgatttgcctgaacatggtgaccatgatggtggaaacagatgaccagagc
gagctcaaaacctctgtcctctacaagataaacctggtcttcatcgtcatcttcaccggg
gagtgtgtgctcaagatgttcgccctgcgccactacttcttcactgtaggctggaacatc
ttcgacttcgtggtggttatcctctccatcctaggtatcgtcctctcagacatcatcgag
aagtactttgtgtcccccaccctcttcagggtcatccggctggcgaggatcggccgcgtg
ctgcggctgatccgaggagccaaaggcatccggacactcctctttgccctgatgatgtcc
ctgcctgccctgttcaacatcggcctcctgctcttcctcgtcatgttcatctactccatc
ttcggcatgtccaacttcgcctacgtcaagaaggagtcaggcattgatgacatcttcaac
ttcgaaacctttgggaacagcatcatctgcctcttccagatcaccacgtcggcggggtgg
gatgggctcctcaaccccatcctcaacagcggccccccggactgcgaccccgagctggag
aaccctgggagtttggtgaaaggagactgtgggaaccccgccatcggcatcttcttcttc
tgcagctacatcatcatctccttcctcatcgtggtgaacatgtacatcgccatcatcctg
gagaacttcagcgtggccacggaggagagcagcgagcccctctgtgaagacgattttgaa
atgttttatgaaacttgggagaagtttgacccagacgccacccagttcatcgcctacagc
accttgtctgactttgtggacaccttgcaggagccactcagagttcccaagcccaacaag
atcaaactcatcaccatggatctaccaatggttgctggggacaaaatccactgcctggac
atcctctttgccctgactaaggaagtgctgggagactcgggagagatggatgccctgaag
gccaccatggaggagaagttcatggctgccaacccctcgaaggtttcctatgaacccatc
accaccaccctgaagaggaaacacgaggaggtgtgtgctaccaagatccagagggctttc
cggaggtacctcctgaggcgctcggtgaagcaggcgtcctacatgtacaggcacagccag
gacaccctgggtgaggacgcgcccgagaaggaagggctgatagccaccaaaatgcaggag
atctatgggaacagtgggacagacgtggacactgcccctgccttgggcctcaagcccatt
cccagctcagagacaccccaggatgctcctgaggaagcacaggcgtggggtaaggaacat
gtggtgaaagagtcgctggtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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