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KEGG   Trematomus bernacchii (emerald rockcod): 117480385
Entry
117480385         CDS       T09643                                 
Symbol
rxrbb
Name
(RefSeq) retinoic acid receptor RXR-beta-B isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03320  PPAR signaling pathway
tben04148  Efferocytosis
tben04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:tben00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    117480385 (rxrbb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tben03000]
    117480385 (rxrbb)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:tben03310]
    117480385 (rxrbb)
Transcription factors [BR:tben03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    117480385 (rxrbb)
Nuclear receptors [BR:tben03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   117480385 (rxrbb)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 117480385
NCBI-ProteinID: XP_033983578
Position
Unknown
AA seq 441 aa
MSSQQGNSSASNSPTSILGSPFSVISSSLNSPVVSPTLGFGPISSSQISSSAGMHSISSS
EDVKPPFGLRPMPSHSPGIMMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLS
YTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVIKHVKWIKEDGKDEGWMTVQEERQ
RNREREGELEFSMGVNEEMPVEKILEAETAVEKKTELHSDDGSAGNSPHDAVTNICQTAD
KQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIGLKDGVLLASELQRD
SAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAK
GLSNTGEVELLREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQLS
NT seq 1326 nt   +upstreamnt  +downstreamnt
atgtcctcacagcaaggcaacagttcagcctccaacagccccaccagcatcttgggttct
cccttctcagtaatcagttcctcacttaactcccctgtggtctcacccactctgggattt
ggacccatcagcagcagtcagatctcttcttcagcagggatgcactcaatcagcagctca
gaagatgtcaagcctccgtttggcctgaggcccatgccatctcacagccctgggataatg
atgtctcagaaacgcatgtgtgtcatctgtggagatcgctcctctggcaagcactacgga
gtgtacagctgtgagggttgcaaaggtttcttcaaacgaactgtgcgcaaagaccttagt
tatacctgcagagataacaaagagtgcctggtcgacaaacgccagcgcaatcgctgccag
tactgccgctaccagaagtgcctggccatgggcatgaagagggaagtgatcaaacatgta
aagtggattaaagaagatggaaaagatgagggatggatgacggtccaggaggagcgccag
aggaaccgcgagcgagaaggagagctggagttcagtatgggcgtgaatgaggagatgccc
gtggagaagattctagaggcagagaccgctgtggagaagaagacggagcttcactctgac
gatggctccgctggcaactctccccatgatgcagttaccaacatctgccagactgcagac
aaacagctgtttgctttggtggagtgggcgaagagaatccctcacttctctgagctgccc
ctcgacgaccaggtcatcctcctgcgtgcagggtggaatgagctcctcatcgcctcgttc
tcccaccgctccatcggtctgaaggacggagttctcctggcctctgagctgcagcgggac
agtgcacacagcgcgggagtgggggccatttttgacagggagagtgtgcagagtgcagag
gtcggcgccatatttgacagggttctcacggagctcgtcaataaaatgagagatatgcaa
atggacaaaacagagctgggctgcctccgagccatcgtcctcttcaacccagatgctaaa
gggctctccaacaccggggaggtggagctccttagagaaaaggtctatgcatcattggag
tcctattgcaaacagaaataccccgagcagcagggaaggtttgcgaagctcctcctgcga
ctgccagcactgcgatctatcggcttgaagtgtttggagcatctcttcttcttcaagctg
attggtgacacgcctattgacactttcctaatggaaatgcttgaagctccccatcagttg
tcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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