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KEGG   Tachysurus vachellii: 132854427
Entry
132854427         CDS       T09596                                 
Symbol
rxrab
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
tvc  Tachysurus vachellii
Pathway
tvc03320  PPAR signaling pathway
tvc04148  Efferocytosis
tvc04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    132854427 (rxrab)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tvc03000]
    132854427 (rxrab)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:tvc03310]
    132854427 (rxrab)
Transcription factors [BR:tvc03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    132854427 (rxrab)
Nuclear receptors [BR:tvc03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   132854427 (rxrab)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 tRNA_bind_3
Other DBs
NCBI-GeneID: 132854427
NCBI-ProteinID: XP_060738802
Position
12:15769794..15819508
AA seq 504 aa
METKPFLSLGFLKSPCSVAPPCVQGRLGDAGSSPSGCYCFTGTCPLHHRRISTDSSGQQS
SSPLSSPTGHRSVGPHALHPSLLTPSSMGSTPGQLHSPINGLTSPFPVISSAMGHPSITG
PSSTSMAFGPSLSPQLSSPMTSVSSPEDVKPPLGLNGVMKIPAQPTGTSLSLTKHICAIC
GDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCPIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRAKEKSEAEMELAGCASEDMPVEKILEAELAVEPKTETYVEGSIGAAA
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI
SVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMLMDKSELGCLRAIVLFNP
DSKGLSNPTEVEALRERVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcttgtcgctagggttcctgaaaagcccgtgctcagtagcgccg
ccctgtgtgcagggccggttgggcgatgctggcagctcgccttcgggctgctactgcttc
acgggcacatgcccactgcaccatcgcaggatatccacagactcatcaggccagcagtcc
tcgtctcctctgagctccccgactggtcaccgttctgttggccctcacgcacttcacccg
tccctgctcaccccgtcttccatgggctccacaccgggtcagcttcactcacccatcaat
ggcctaacatcacccttccctgtcatcagctcagccatgggtcatccctccatcacaggg
ccttccagcaccagtatggccttcggacctagtctcagtccacaactcagctcccccatg
acttcagtcagcagcccggaagatgtcaaacctcctctgggcctgaacggtgtcatgaag
attccagctcagccgacaggcacctctctctctctcaccaaacacatttgtgctatttgt
ggcgatcgatcttcaggtaaacactatggcgtgtacagctgcgaaggttgcaagggcttc
ttcaagcgcacagtgaggaaagacctgacttatacctgtcgagacaacaaggactgtccg
atcgacaaacgtcagcgcaaccgctgccagtactgccgctatcagaagtgtctggccatg
ggcatgaagagagaagctgtccaggaggagcgtcagcgggcgaaagaaaagagtgaagcc
gaaatggagctggcgggctgtgccagtgaagacatgccagtggagaagattctggaagca
gagctggcagtggagcccaaaactgaaacctatgtggaaggcagcattggtgcagctgcc
aactctcccaacgaccctgttacaaacatttgccaagctgctgataagcagctcttcaca
ttagtggaatgggcaaagaggataccacacttttctgacctgcctttagatgaccaggtt
attcttttacgagcagggtggaacgagctcctcatcgcttctttttcacatcgctcgata
agtgtgaaagatggcatattgttagcaacaggcctccatgtccacagaaacagtgcgcat
agcgcaggagtaggtgcaatttttgatagagtgctgactgagctggtgtctaagatgcga
gacatgctgatggacaagtctgagcttggatgcctgagagctattgttcttttcaatcca
gactctaaaggcctgtctaacccaacagaggtggaggcacttagagagagagtatacgct
tctctggaggcctactgtaaacagaaataccccgatcagcctgggagatttgctaaactg
cttctccgactgcctgctttgcgttccatcgggctgaagtgtctggagcacctctttttc
ttcaaactgattggagacacacccattgacacttttctaatggaaatgctagaggcacca
caccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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