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KEGG   Scomber scombrus (Atlantic mackerel): 133992528
Entry
133992528         CDS       T10651                                 
Name
(RefSeq) collagen alpha-3(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510  Focal adhesion
ssco04512  ECM-receptor interaction
ssco04820  Cytoskeleton in muscle cells
Brite
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   133992528
Glycosaminoglycan binding proteins [BR:ssco00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133992528
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   133992528
SSDB
Other DBs
NCBI-GeneID: 133992528
NCBI-ProteinID: XP_062287158
Position
13:26560492..26586307
AA seq 2743 aa
MSKVLVRAMLMTPTLSVDRKSAGRDVVFLLDGSDGSRTGFPAMRDFVERVIESLSVDDNK
DRVSVVQYSRDPAAQFYLNTYTTKGEILESVRGLSHKGGTTVNTGAALQYLKDNVFTASA
GSRRLEGVPQILILLSGESSFDSVDAPASALKQLGVLTFAVGTKSSDSEELQMISYDPSY
AYSVPEFTDLPSVQQQLQSSVEAVVVDMIPESPTLPVDITKKDIVFLLDGSNGTRNGFPA
MRDFVQRVVETLSVDDNTDRVSVVQYSRDPAAEFFLDKYTKREDILDSVRGLRHRGGRPL
NTGAALQYVRDNVFTTSTGSRHLQGVPQILILLNGGRSFDNVDTPASALKQQGVFAIGIG
TRNSDSRELQKISYDPSLALSVSEFTDLPTVQEQLSSVMSKVLVRVTPMTPTVTVGRKPR
GMDVVFLLDGTDGTRTGFPAMRDFVQRLVETLSLDDNKDRVSVVQYSRDPAAQFYLNTYS
TKSEILDTIRGLRHKGGRPLNTGAALQYLRDNIFTSSAGSRLLEGVPQVLILLSSGRSFD
RVEAPASALKQLGVFTFAIGSRRSVQSELQKISYSPNYALFVSEFTDLPSVQQQLQSSMD
YVVFDLTPESPTVLVESQGPRKDVVFLVDGSDGVGREFPIIQEFIRRVVESLNVGENKIR
IGVVQYGDSAQADMHLNTHTTKQGVLNAVKEMRHRGGRQRNLGQALEFVSQDVLTAARGS
RKQEGVPQFLIVVSSGSSTDDISGAATSLKKSRVLPFSIGTRDVNPQQLQVVSYVPNFAF
RVDDLPGLYTVQENLINTLTEMSDEDIARMRPVYPEIDVITTVTTGGGKRDVVFLIDGTT
AGRREFPSILEMIRRVVEKLDVGLEKVRVSVVQYSDDAKLEFLLNQHSTKEEVRQAVARL
RSKGGNSLNTGRALEWVSRNIYQRSAGSRIEDGVPQFLILVTGGKSTDDVSTPADQLKRN
YIAPLAIGSRNADPNELRQISLKPELVYTVDSFQQLPSVEQKLIDSVTTISTADIISSYV
PAPVEPNLSNLGRKDIIFLIDGSDNTGPDGIAHIRDFIVNTVQQLDVQPDQVRVAVVQYA
DKVKTEFSLNSHNNKPAVISAIKRLRQRGGRSSDLADAIEYVIQNELKPAAGVRMAEASQ
HLVVLTGGRSRQDVSIYGPLLKGSRVNCIGIGAGGADARQLTQISTTSEDVLQVPTFPGL
PAIKERFIARLSGTIPDELPTDYEDPTSLPPPKKADIVFLVDGSINLGRENFNEVMSFII
NLIDLFFNERDNLRIGLAHYATDVTDVFYLNTYKNRQDIVSAIGRTDYKGGRRINTGAAI
RHIQNVHFTKEKGSRKDEGTPQILMVITGGRSSDDSKTAALGLRNTGVRIFAVGVGDTGN
ELENIASESSTVARASTFQELSELNEQILETLDDEVKGKLCVGTAEPAKTCSVEVLVGFD
VNAQNIFNAQTSLQSKMDAILRRISKMEAITCSSGQIPTVQVGMLALDSASEPVLLEFTD
NAAELFEGFKALRNRGPFVLNGKTIAAYTNRFKSRPDNVVKVVIHLTDGFDAPYVEMKRR
VDELRLSGVNSFILVGMERVAKFEEASLLGYGRGFRYTRPLQINIMELDYELMEELDNIA
ERECCAVPCKCTGTRGVRGGVGTSGPKGSPGLSGSQGHPGDEGGPGERGPPGVNGTQGFQ
GCPGQRGVKGSRGYSGDKGELGEIGLDGINGEEGKGGVAGPPGARGNPGGRGPKGAKGQA
GDIGDTGIRGDPGTSGPNNNQAGPKGDPGDAGPAGEAGVDGKKGTPGEPGRRGNDGRRGP
PGTAGNAGKPGADGEAGEPGIGGSRGPAGPNGAPGPRGEDGNPGPRGPGGKPGSAGENGR
RGGLGRKGEPGDPGPKGVIGPLGPRGEPGGDGRDGFGIPGPDGRKGDEGFPGFPGLKGAA
GDSGTKGGPGRKGNNGQRGVSGESGPSGQKGEVGYSGPNGQKGPRGPGVVQCDLVKKIRD
NCPCCYGQQECPLYPTELAFALDASQGIGRPIFNNMRDTVLRIVRDITITESNCPRGARV
ALTLYNNEVTTEVRFADRMKKRDLVQRIEGLQPLQTRKERKLDSAMSFVAQNTFKRVRSG
FLIRKVAVFFVGSELKDTQAVTNAALRLHDSGIATLFLVNREDSSLARALRVNNTALAQV
IVLPSPGGAQYNSVLQKIMNCHVCLDICAPDQICDYVPPTTSRDKRSFTTDVDIDMAFVM
DSSESTYPTVFTEIKRYIAHIVEHLQVSSNPKSSVHHARVSVIQQAPFEFLYNKTGSPIH
VDIGLTEHQSSQDIVRFLLEKTPQLEGGRSLAAAIQSTVEQVFEKVPHQRDRKVLMLFVT
GNVEEEEEQLVRIATEIKCRGYFLVIMGVGDTVSAGDARVLSSMASEPSDVFFKRLDSLS
QFYDTHIQTFGQLLPKYISIENAFYMSPEVSKNCKWFQSDQPLKNPFTSSHQEEKHQKHH
EKHQAVHPTKHKDAEELHVSNITSSSLKLRWSSPDPKLFVYFEVVVTRLHDHVLVLKTNV
SGTELSLDNLKSGQSYHAVVSAYTADGHVVSTRKGIITTKTAVHKPSSRRTSTVNTTPLD
KPETVNEFADPCSFDYDPGMPCKDYQAKWFFDRKNGICTQFWYGGCGGNENRFDTEALCL
KRCMRTVPVAERQRRVKQVEQIEILPAPAASTNVDICQLPKEEGTCAKFVLKWHYDAPSK
SCTRFWYGGCGGNQNRFDTHEQCQKACGKQAPVNQGVVAAIRT
NT seq 8232 nt   +upstreamnt  +downstreamnt
atgagcaaagtgctagtaagggccatgcttatgacaccaacattaagtgtggatagaaag
tcagcaggaagggatgttgtgttcttgttggatggatctgatggtagtagaactggattt
ccagcaatgagagactttgtcgaaagagtaatagagtcacttagtgtggatgacaacaag
gaccgtgtctcagtggttcagtacagcagagatccagctgcccagttctatctgaacacg
tacacaacaaagggcgagatccttgagtctgttagaggtttaagtcacaaaggtggaaca
accgtcaacactggagcagctcttcagtatttgaaggataatgtcttcacagcctctgct
ggaagcaggcgtctggaaggagttccacagatcctaatactgttaagtggtgaaagttcc
tttgacagtgttgatgcaccagcctctgctctcaaacagctgggagtcctgacctttgca
gttggcactaagagctctgatagcgaagaacttcagatgatatcttacgaccccagttat
gcttactctgtgcctgaattcactgaccttcccagtgtccaacaacaacttcagtcttct
gtggaggctgttgttgttgacatgatcccagaatcaccaactttacctgttgacattacc
aaaaaggatatcgtatttctgttggatggttccaatggcacaaggaatggcttcccagcc
atgcgagactttgtccagagagtagtagagacactcagtgtggatgacaacacggaccgt
gtctcagtggttcagtatagcagagatccagctgccgagttctttctagacaagtacacc
aaaagagaggacattttggattcggtcagagggctgagacacagaggaggcagacccctc
aacaccggggcagccctccaatatgtcagggacaatgtttttacaacgtccaccgggagt
aggcacctgcaaggtgttccacagatactgatcctgctaaatggtggaaggtcttttgac
aatgtagataccccagcctctgctctcaaacagcagggcgtctttgccattggcattgga
acaaggaactctgacagtagagagctgcagaagatatcgtatgaccctagtctcgctcta
tctgtatctgagttcactgacctccccactgttcaagaacagctctcttctgtaatgagc
aaagtgctagtgagggtcacacccatgacaccaactgtaactgtgggcagaaagccacga
ggaatggatgttgtgttcttgttggatggaactgatggtactagaactggattcccagct
atgagagactttgtccagagattagtagagacactcagtctggatgacaacaaggaccgt
gtctcagtggttcagtacagcagagatccagctgcccagttctatctgaacacgtattca
acaaagagtgagatccttgatactatcagaggcttgaggcacaagggtggaagacctctc
aacactggagcagctctccagtatttgagggataatatcttcacatcctctgctggaagt
aggctcctggaaggagtccctcaggtcctaatattactaagcagtggaagatcttttgac
cgtgttgaggcgccagcttctgctctcaaacagctgggcgtctttacctttgcaattgga
tctagaagatctgttcaaagcgaactgcagaaaatatcctacagtcccaattatgctcta
tttgtttctgaatttactgaccttcccagtgtccaacagcaacttcagtcttctatggat
tatgtggtttttgacttaaccccagaatcaccaactgtcctcgttgagtcgcagggtccc
cggaaggatgttgtcttccttgttgatggatctgatggtgttggacgggaattccctatc
atccaggagttcatccgccgtgttgtcgagagtctcaatgtgggcgagaataagatccgg
attggagtggtccagtatggtgactcagcacaggctgacatgcatctgaacacacataca
accaaacaaggtgttttgaatgccgtcaaggaaatgaggcaccggggaggaagacaacgg
aacctgggtcaggccttggagtttgtcagtcaggatgttctgacagcagcacgaggtagt
aggaagcaagaaggtgtaccacagtttttaatcgttgtctccagtgggtcttctacagat
gacatcagtggtgcagcaacttccctcaaaaaatctagagttcttcccttcagcattggg
accagggatgttaatcctcaacagctccaggtggtgtcatatgtgcctaactttgccttc
agagtagatgacctccctggcctatacacagtacaggaaaacttaatcaacactctcact
gagatgtcggatgaagacatcgcaaggatgcgtccagtatatccagaaattgatgtaatc
acaacagtcactacaggaggaggaaagagagatgtcgtgtttctaattgatggcaccaca
gcagggcgtagagagttcccttcaatccttgaaatgataagaagagttgtggagaagttg
gatgtaggcctggaaaaagtcagagtttcagtggtacagtacagtgatgatgcaaaatta
gaatttcttctgaatcaacactccaccaaagaggaggtacgccaggctgtggcgagactc
cgtagcaaaggtgggaacagtctaaacacaggtcgtgctcttgaatgggtctccagaaac
atttaccagaggtcagcaggaagccgcattgaagatggtgtgcctcagttcctcatttta
gttacaggtggcaagtctacagatgatgtatccactccagcagaccaacttaagagaaac
tacattgcacctcttgctattggctcaaggaatgctgaccctaatgaactgagacagatt
tccctgaagcctgaacttgtatatacagttgacagtttccagcagcttccaagtgtggag
cagaagctcattgattcagtcacaacaatatccaccgctgatatcatcagtagctacgtt
cctgcacctgtggaaccaaatctctcaaatctcgggagaaaggacattattttcctaatt
gatggctcagacaatacaggtccggatggtattgctcatatccgtgatttcatcgtcaac
actgtccaacaactcgatgtccaacctgatcaagtgcgtgtggctgttgtccagtatgca
gacaaagttaaaactgagttctctctcaactcacacaacaacaagccagctgttatctct
gctatcaaaagacttcgccagaggggtggccggtcatcagatctggctgatgccatcgag
tatgtcatacagaatgagttaaaacccgctgctggtgttcgtatggctgaggcctcccag
catcttgtggttctcacaggtggacgctcccgccaagatgtttctatctatggaccactg
ctgaagggctccagggtcaattgcattggtattggagctggtggtgctgacgcaaggcag
ctaacccagatttctactacctcagaggatgtccttcaggttcctacattccctggcctg
ccagcaatcaaggaaaggtttattgcaaggttgagtgggactatccctgatgaacttccc
acagactatgaggatccaacatcccttcctccacctaaaaaggctgatatagtgtttttg
gtggatggctccattaacttgggcagggaaaacttcaatgaagtgatgtcatttatcatc
aacctgattgatctgtttttcaatgagagagacaacctgaggattggcctggcacattat
gccacagatgtgactgatgtcttctacctcaacacctacaaaaacaggcaagatattgtt
agcgctattggccgaacggattacaaaggtggacgaagaatcaatactggtgcagccatt
cgccacattcaaaatgttcatttcaccaaagaaaagggcagtcggaaggatgagggtact
cctcagatccttatggttatcactggaggacgctcatctgatgacagcaaaacagcagca
cttggtctaaggaatactggtgtgagaatctttgctgtaggagtgggtgacactgggaat
gagttagaaaacatagcaagcgagtcgtccactgtggctcgggcaagcacctttcaggag
ctttcagagctgaatgagcaaatcctggagactttggatgatgaagtgaaggggaagctg
tgtgttggtacggcagaacctgctaaaacctgcagcgtagaggttttggtgggctttgat
gttaatgcccagaatatcttcaatgctcaaaccagcctccagagcaagatggatgccatt
ctgaggaggatttccaagatggaagctatcacttgctcatcaggccagattcccaccgtg
caagtaggcatgctggcattggactctgcctctgaacctgtcctgctggaattcacagac
aatgctgctgagctctttgagggcttcaaagccctacgcaatcgtggcccctttgtcctc
aatggcaagaccatcgcagcttacacaaataggttcaaaagcagaccggataatgttgtg
aaggttgtcattcatctgactgatggctttgatgccccatatgttgaaatgaaaaggcga
gttgatgagctgcggctgtcaggagtgaacagtttcattcttgtcggaatggagcgggtg
gccaaatttgaggaggcttcattattgggatatgggcgaggtttcaggtacacaagaccc
ctacaaatcaatatcatggaattggactatgagctgatggaagaactggacaatattgca
gagagggagtgctgtgcagtgccatgcaaatgtactggcaccagaggagtccgaggggga
gttggaacttcagggcctaagggcagtccaggattatcaggaagccaagggcatcctgga
gatgagggtggacctggagagagaggtccccctggtgtaaatggaactcagggtttccag
ggatgtcctggacaaaggggtgtcaagggttcccgtggatactcaggagataagggtgaa
cttggagaaattggccttgacggcatcaacggagaagagggcaaaggtggagtggctgga
cccccaggagcaagaggaaaccctggcggaaggggtcctaaaggtgccaaaggacaagca
ggagacataggagatacaggaatccgaggagaccctggtacaagtggaccgaataacaac
caagcaggacctaaaggagaccctggtgatgctggtccagcgggagaggctggtgtggat
ggaaagaagggaacacctggagaacctggaagaaggggaaatgatggcagaagaggccca
cctggaacagctggaaatgctggaaagccaggagctgatggtgaagcaggagaacctggt
attggaggatcaagaggtccagctggaccgaatggtgcacccggacccagaggagaagat
gggaacccaggacccagaggtcctggaggtaaaccagggtctgctggagaaaacggcaga
agaggcggtcttggtcgcaagggagagccaggagatcccggacctaaaggtgttattgga
ccccttggcccccgtggagagcctggtggagatggcagagatgggtttggtattccaggg
cctgatggaagaaagggtgatgaaggtttcccaggattcccaggactaaagggagcagct
ggtgactccggcaccaagggtggacctggacgtaaaggaaataatggccagaggggtgtc
tctggagaaagtggtccatctggacagaaaggagaggttggatattccggaccaaatggt
cagaaagggccgagaggaccaggtgttgtgcaatgtgacctggtcaagaagatcagagac
aactgtccttgctgttatggtcagcaggaatgcccactctaccccactgagctagccttt
gccctggatgcctctcagggtattggccgccctatcttcaacaacatgcgtgacacagtc
ctgcgtattgtccgagatatcaccatcactgagagcaactgtccaagaggagctcgtgtt
gctttgaccttgtacaacaacgaagtgaccactgaggtccggttcgctgatagaatgaag
aaacgtgacctggtgcagcgcatcgagggattgcagcccctgcagacccgcaaggagcgc
aaactggattcggccatgagcttcgtggcccagaacaccttcaagagggtgcgcagtggt
ttcctcataaggaaggtagccgtcttctttgttggcagcgaactaaaggacacgcaagca
gttacaaacgcagctctccgcctccatgattctggaattgccactctgttcttagtcaac
cgtgaggactcatcacttgccagagcattgcgggtcaacaacactgcactggcccaggta
attgttcttcccagccctggaggtgcacagtacaattcagtcctccaaaagattatgaac
tgccatgtctgcctcgacatctgcgctccagaccaaatatgtgactatgtacccccaaca
accagtcgggataagcggtctttcaccacagacgtggacatcgatatggcatttgtcatg
gacagctctgagtctacatacccaactgtattcactgagattaaacgctacatagcgcac
atagtggagcatctgcaagtgtcttcaaatcccaagtcatctgttcaccatgccagagtg
tcagtgatccaacaagcaccttttgagttcctttacaacaaaactggctctcccatccat
gtggatattggcttgactgagcaccagtcatctcaggatattgtcagattcctgctggag
aagacaccgcagctagaaggtggccgctcattggcagcggctattcaatcaacagtggaa
caggtgtttgagaaggtgcctcaccaacgtgaccggaaagtactcatgctctttgtaaca
ggaaatgtggaagaggaagaagagcagctggtgcgtattgccactgagatcaagtgcaga
ggctacttcctggtcatcatgggcgtgggtgacacagtcagtgctggggatgctcgtgtc
ctgtcaagcatggccagtgagccttcagatgtcttcttcaagagactggacagcctctca
caattttacgatactcacattcagacctttggccagctgctgccaaaatacatcagcatc
gaaaatgctttctacatgtcccctgaagtctccaaaaactgcaagtggttccagagtgac
cagccactaaaaaacccatttacatcatcacaccaagaggagaaacatcagaagcatcat
gagaaacatcaagcagttcatccaacaaaacacaaagacgcagaagagctacacgtctcg
aacatcacctccagcagcttgaaattgcgttggagcagcccagaccccaagctctttgtc
tactttgaggtggtggtgacacggctgcatgaccacgtgctggtgctgaagaccaacgtg
tcaggcacagagctttctctggacaacttgaagagtggtcagtcatatcacgctgtggtc
tctgcctacactgcagatggtcatgttgtctccacccgcaaaggcatcatcactaccaag
acagcagtgcataagccatccagccgtcgtaccagtactgtaaatacaacaccactggac
aaaccagagactgtcaatgaatttgcagacccatgctcatttgactatgaccctggaatg
ccatgcaaagactatcaggctaagtggttctttgacagaaagaacgggatctgtactcag
ttctggtatggaggttgtggaggcaatgaaaataggttcgacactgaagccctctgcttg
aaacgctgcatgaggacagtgccagttgcagagcgtcagcgcagagtaaagcaggttgag
cagatagagatcctcccagctcctgcggcttctacaaatgtggacatttgccagcttccc
aaggaggaaggaacttgtgccaaatttgtcctcaagtggcactacgatgcccccagcaag
agctgcacacgcttctggtatggaggctgcggtggaaaccaaaatcgctttgacacacat
gagcaatgtcaaaaggcttgtggaaaacaagcacccgtcaaccaaggagtcgtcgctgca
ataagaacatag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
All databases (4)   

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