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KEGG   Salvelinus namaycush (lake trout): 120021279
Entry
120021279         CDS       T07522                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-A-like isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03320  PPAR signaling pathway
snh04148  Efferocytosis
snh04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:snh00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    120021279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:snh03000]
    120021279
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:snh03310]
    120021279
Transcription factors [BR:snh03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    120021279
Nuclear receptors [BR:snh03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   120021279
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 120021279
NCBI-ProteinID: XP_038820884
UniProt: A0A8U0TLA4
Position
Sna26:23857242..24011666
AA seq 506 aa
METKPFMSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTDSSGQVTSSPLSS
PTSHRGMHPSLLNPSSMGPSGSLHSPISTLSSPMNGLGSPFSVINSPMGPHSMSSPGMGY
GPSVSPQMFQLNSQMNSVSSSEDIKPPLGLNGVMKVSAQTSPGCMPLSLTKHICAICGDR
SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLACGMK
REVLLHTAVQEERQRAKERSENEVESTSSVNEDMPVEKILEAELAVEPKTETYIETNLGM
PSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF
NPDSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHL
FFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcatgtcattggggttcctgaagccccagtgctcgctggctccg
cccccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccacccccggatatctacagattcatcaggtcaggtgacctcatctccactgagctct
cccacgtcccaccggggcatgcacccatccctgctcaacccgtcctccatggggccctca
ggctccttgcactctccgatcagcaccctgagttctcccatgaacggcttgggctcgccc
ttttctgtcatcaactcccccatgggcccacactccatgtcctcacccggcatgggctac
ggtcccagtgtcagcccccagatgttccagctgaactcccaaatgaactcggtcagcagc
tcggaggacatcaagcccccgctgggtctcaacggggtgatgaaggtgtccgcccagacc
tcgccggggtgcatgcctctctccctcaccaaacacatctgtgccatctgcggagaccgc
tcctcaggtaaacattatggagtgtacagctgtgagggctgtaaaggcttcttcaagagg
acagtgaggaaggacctgacctacacctgccgcgacaacaaggactgtctgatcgacaag
cgccagcgcaaccgctgccagtactgtcgctaccagaagtgtctggcctgtggaatgaag
agagaagttttgttacacacagccgtccaggaggagcgccagcgggccaaagagcgcagt
gagaacgaggtggagtccaccagcagcgtcaacgaggacatgcccgtggagaagatcctg
gaggcagagctcgctgtggaacccaagacagagacctacatcgagaccaacctgggcatg
ccatccaactcgcccaatgacccggtgactaacatctgccaagcagccgacaagcagctc
tttacactggtggagtgggccaagaggatcccccacttctctgagctgcccctggacgac
caggtcatcctcctacgagcagggtggaatgagctactcatcgcatccttctcacaccgt
tcgatagcggtgaaagatgggatcctcctagcaacagggctacacgtccatcgtaacagc
gcccacagtgctggagtgggagccatctttgacagagtgctcacagaactggtgtccaag
atgagagacatgcagatggataagacagagctggggtgccttcgagccatcgtcctcttc
aacccagattctaaaggcttgtcaaatccaggcgaggtggaggctttgagagagaaggtc
tacgcctctctggaggcctactgcaaacagaaatacccagatcagcctggcaggtttgcc
aagctgttgctgcggttaccagccctgcgttccattggtctgaagtgtctggagcacctg
ttctttttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctagag
gcgccccaccaaatgacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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