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KEGG   Silurus meridionalis (southern catfish): 124380339
Entry
124380339         CDS       T08004                                 
Symbol
rxrab
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03320  PPAR signaling pathway
smeo04148  Efferocytosis
smeo04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    124380339 (rxrab)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:smeo03000]
    124380339 (rxrab)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:smeo03310]
    124380339 (rxrab)
Transcription factors [BR:smeo03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    124380339 (rxrab)
Nuclear receptors [BR:smeo03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   124380339 (rxrab)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 124380339
NCBI-ProteinID: XP_046697172
Position
27:complement(5585898..5632735)
AA seq 504 aa
METKPFLSLGFLKSPCSVAPPCLQGRLGDAGSSPSGCSCFTGTCPLHQRRIPTDSSGQLS
SSPLSSLTGHRAVGPHPLHPSLLTPSSMGSAPGQLHSPINGLASAFPVINSSMGHPSITG
PSSTSMAFGPSLSPQLSSPMTSVSSPEDIKPPLGLNGVMKVPAQPTGTSLSLTKHICAIC
GDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCLIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRAKEKSEAELELAGCSSEDMPVEKVLEAELAVEPKTETYEESSVGVAP
SSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI
SVKDGILLATGLHVHRDSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNP
DSKGLSNPTEVEALRERVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcttgtcgctagggttcctgaaaagcccatgctcagtagcgccg
ccctgtttgcagggccggctgggcgacgctggcagctcgccctcgggctgctcctgcttc
acgggcacatgcccgctgcaccagcgcaggatacctacagattcatcaggccagctgtcc
tcatcacctctgagttccctgactggtcaccgtgctgtcggtcctcacccgctccacccg
tcccttctcaccccgtcttccatgggctccgcacctggtcagcttcactctcccatcaat
ggcttagcatcggccttcccagtcatcaactcctcaatggggcatccttccattacgggg
ccttccagcaccagcatggcctttggaccaagtctcagtccacaactcagctcccccatg
acttcagtcagcagcccggaagacatcaaacctcctttgggcctgaacggagtcatgaag
gttccagctcagccgaccggcacttcactgtctctcaccaaacacatctgtgccatctgc
ggcgatcgatcttcaggtaaacactatggcgtgtacagctgcgaaggctgcaaaggcttc
ttcaagcgtacagtgaggaaagacctgacttacacctgccgagacagcaaggactgtctg
atcgacaagcggcagcgcaaccgctgccagtactgccgctaccagaagtgtctggcaatg
ggaatgaaaagagaagctgtccaggaggagcggcagcgggcgaaagaaaagagtgaggct
gaattggagctggcaggctgttccagtgaagacatgccagtggagaaggttctggaagct
gagctggcagtggagcccaaaaccgaaacctatgaggagagcagtgttggtgtggctccc
agctctcccaacgaccctgttacaaacatttgccaagccgctgataagcagctcttcaca
ttagtggaatgggcgaagaggataccacacttttctgacctgcctttagatgaccaggtc
attcttttaagagcagggtggaacgagctcctcattgcttctttctcgcatcgctcgata
agtgtgaaagatggcatattgttagcaacaggcctccacgtccatagagacagtgcacat
agtgctggagtaggtgccatttttgatagagtgctgacagagctggtgtctaagatgcga
gacatgcagatggacaagtctgagcttggatgcctgcgagctattgttcttttcaatcca
gactctaaaggcctgtctaacccaacagaggtggaggcacttcgagagcgagtttacgct
tcactggaggcctattgtaaacagaaataccccgatcagcctgggagatttgccaaactg
ctacttcgcctgcctgccctgcgctccattggcctgaagtgtctggagcacctctttttc
ttcaaactcatcggagacacacccattgacacttttctcatggaaatgctggaggcgcca
caccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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