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KEGG   Scomber japonicus (chub mackerel): 128380788
Entry
128380788         CDS       T09718                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03320  PPAR signaling pathway
sjo04148  Efferocytosis
sjo04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    128380788 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sjo03000]
    128380788 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:sjo03310]
    128380788 (rxraa)
Transcription factors [BR:sjo03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    128380788 (rxraa)
Nuclear receptors [BR:sjo03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   128380788 (rxraa)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 128380788
NCBI-ProteinID: XP_053196659
Position
19:complement(9007604..9113286)
AA seq 537 aa
METKPFLSLGFLKPQCSLAPPMQRGRSMEACSCFSGMCPLHQRRLSSVCKSVHGCHQIGV
LTGSQNERKGWTAFDLSCHQDSSGQVTSSPLGSPTSHRGMHPSLLSPTSMGPSGSLHSPI
STLSSPMNGLASPFSVISSPMGPHSMNSPGMGYGPSVSPQVRPLNSPMNSVSSTEDIKPP
LGLNGVMKVPAQPSGTALSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYT
CRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREVLLHAAVQEERQRAKDRNENEVESTSC
ANEDMPVEKILEAEQAVEPKTETYIETNLGVPSNSPNDPVTNICQAADKQLFTLVEWAKR
IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAI
FDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCK
QKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1614 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccattcttgtcattggggttcttgaagccccagtgctcgttggctcct
cccatgcagcgaggccgctcaatggaggcttgttcctgcttcagtggcatgtgtcccctc
catcagcgtcgcctatcctcagtctgcaagtcggttcatggatgccatcagataggggtc
ttaacaggcagtcaaaacgaaaggaagggctggactgcttttgatttgagctgtcaccaa
gactcatcaggccaggtgacttcctcgcctctgggctcacccacctcccaccggggaatg
cacccatctcttctcagtccgacgtccatggggccctccggctcccttcactcgcccatc
agcacgctgagttcgcccatgaacggtctagcttcgcccttttccgtcatcagctcgccg
atgggcccccactccatgaactcgcccgggatgggttacggccccagtgtcagcccccag
gtgaggcctttgaactctccgatgaactcggtcagcagtacggaggacatcaagcccccg
ctgggcctcaacggcgtgatgaaggtgcccgcccaaccctcaggcacggccctgtcgctc
actaaacacatctgcgccatctgtggtgaccgctcctcaggtaaacactatggggtatac
agctgtgaaggctgcaaaggtttcttcaaaaggacggtgcgcaaagacctgagctacacc
tgtcgcgacaacaaggactgcgtcatcgataagcgtcagaggaaccgctgccagtactgc
cgctaccagaagtgtttagccatgggcatgaagagagaagttttgttacatgcagccgtt
caggaggagcgccagagagccaaggacagaaatgagaacgaggtggagtcaaccagctgc
gccaacgaggacatgcccgtggagaagattctggaagccgagcaggcggtggaacctaaa
actgagacctacatcgagaccaacctcggtgtgccatccaactcgcctaatgacccagtg
acaaatatctgtcaggcggccgacaaacagctctttactttggtggagtgggccaagagg
atcccccacttctctgagctgccacttgacgaccaggtcatccttctacgagcaggttgg
aatgaactcctcattgcatcattttcgcaccgttcgatagcagttaaagacgggattctg
ttggcgaccgggttgcacgtccaccgcaacagcgcccacagtgccggagtgggagccatc
tttgacagagtgctcacagaactggtgtctaaaatgagggacatgcagatggataagaca
gaactggggtgccttcgagctatagtccttttcaacccagactctaaaggtctgtccaac
ccaggtgaagtagaagctctgagagagaaagtctatgcgtctttagaggcctactgcaaa
cagaagtaccccgagcagcccggcagatttgccaagctgttgctgcggttaccggcgctg
cgctccatcggcctcaagtgtctggagcacttgttcttctttaagctcattggcgacacg
cccatcgacaccttcctcatggagatgctagaagccccacatcaaatgacataa

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