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KEGG   Siniperca chuatsi (mandarin fish): 122865845
Entry
122865845         CDS       T08948                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03320  PPAR signaling pathway
schu04148  Efferocytosis
schu04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:schu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    122865845 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:schu03000]
    122865845 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:schu03310]
    122865845 (rxraa)
Transcription factors [BR:schu03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    122865845 (rxraa)
Nuclear receptors [BR:schu03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   122865845 (rxraa)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4
Other DBs
NCBI-GeneID: 122865845
NCBI-ProteinID: XP_044030695
Position
LG18:19700638..19808590
AA seq 505 aa
MNHVQWYYMQGFLKPQCSLAPPMQRGRSVEACSCFSGMCPLHQRRLSTDSSGQVTSSPLG
SPTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLASPFSVISSPMGPHSMNSPGMG
YGPSVSPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTVLSLTKHICAICGDRS
SGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKR
EVLLHAAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIETNLGVP
SNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS
IAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN
PDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLF
FFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgaatcacgtacagtggtactatatgcaagggttcctgaagccccagtgctcgttggct
cctcccatgcagcgaggtcgctcagtagaggcttgttcctgtttcagtggcatgtgtccc
ctccatcagcgtcgcctgtccacagactcgtcgggccaggtgacctcctcgcccctgggc
tcacccacatcgcaccggggaatgcatccgtctctgctcagcccaacatccatggggccc
tccggctctcttcactctcccatcagcacgctgagttcacccatgaacggcctggcttca
cccttttccgtcatcagctcgcccatgggcccccactccatgaactcgcccggcatggga
tacggcccaagtgtcagcccccagatgttccagctgaactctccgatgaactcggtcagc
agcacggaggacattaagcccccgctgggcctcaacggcgtgatgaaggtgcccgcccag
ccctcaggcacggtcctgtcactcaccaaacacatctgcgccatctgcggtgaccgctcc
tcaggtaaacactatggagtgtacagctgtgagggctgcaaaggttttttcaaaaggacg
gtgcgcaaagacctaacctacacctgtcgtgacaacaaggactgtgtcattgataagcgc
cagaggaaccgctgccagtactgccgctaccagaagtgtttagccatgggcatgaagaga
gaagttttgttacatgcagccgttcaggaggagcgccagcgagccaaggagagaaatgag
aacgaggtggagtccaccagctgtgccaacgaggacatgcccgtggagaagatcctggaa
gccgagcaggcagtggaacccaaaaccgagacctacattgagaccaaccttggtgtgccg
tccaactcgcccaatgacccagtgacaaatatctgtcaggcagctgataaacagcttttt
accctggtggagtgggccaagaggatcccccacttctctgagctgccactggacgaccag
gtcatccttctacgagcaggttggaatgaactcctgattgcatcattttcgcaccgttca
atagcgattaaagacgggattctgttggcgaccgggctgcacgtccaccgaaacagcgcc
catagtgccggagtgggagccatctttgacagagtgctcacagaactggtgtcaaagatg
agggacatgcagatggataagacagaactggggtgccttcgagctatagtccttttcaac
ccagactctaaaggtctgtccaaccccggcgaggtagaagctctgagagagaaagtgtat
gcatctttagaggcctactgcaaacagaagtaccccgagcagcctggcaggtttgccaag
ctgttgctgcggttaccagcactgcgctccatcggcctcaagtgtctggagcatttgttc
ttcttcaagctcatcggcgacacgcccatcgacaccttcctcatggaaatgctagaagcc
ccacatcaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (3)   
   Pfam (3)   
All databases (25)   

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