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KEGG   Struthio camelus australis (South African ostrich): 104147736
Entry
104147736         CDS       T08512                                 
Symbol
COL6A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
scam  Struthio camelus australis (South African ostrich)
Pathway
scam04510  Focal adhesion
scam04512  ECM-receptor interaction
scam04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:scam00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104147736 (COL6A1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104147736 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:scam04147]
    104147736 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:scam00536]
    104147736 (COL6A1)
Exosome [BR:scam04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   104147736 (COL6A1)
Glycosaminoglycan binding proteins [BR:scam00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104147736 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   104147736 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 Acetyltransf_1 Piwi
Other DBs
NCBI-GeneID: 104147736
NCBI-ProteinID: XP_009678859
Position
Unknown
AA seq 1012 aa
MRLQNFLFTLLLQACFLTGGLWAQRTEITTQVANAQDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTDRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRNELKNR
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDHTYRRNFTATSLMPTRELDVEETINTIINM
IKDNVEQVCCSFECQPPRGPPGPAGDPGNEGERGKPGLPGQKGDAGEPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGKRGIDGIDGMKGEAGYPGLPGCKGSPGFDGVQGPP
GPKGDPGSYGPKGQKGEPGEDGKPGRQGIPGSPGEKGAPGNRGEPGPAGETGDEGSPGAD
GPTGERGGNGERGPPGSPGDRGPRGEPGEPGPSGDQGREGPLGPPGEPGEAGPPGPKGYR
GDDGPRGNEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFPGAPGQPGDRGDPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPRGSKGAKGRRGPEGRPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEPGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTKENLVQRF
TSDKRVAIVITDGRSDTLRDPTPLSSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFAGPADITLLVDSSTSVG
SKNFETTKKFVKLMAERXRVSVVQYSGRNQQKVEAQFQYNYTVIAKAIDNMEFINDATDV
NAALRYVMGLYQRSSRGGAKKRVLVFSDGNSQGITTRAIERAVQEAQQAGIEIYVLAVGS
QVNEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgaggctgcaaaactttttattcactttgctacttcaagcctgtttcctgacgggaggc
ttgtgggctcagcgcacagaaatcaccacccaagtcgcaaatgctcaagactgccccgtg
gacctgtttttcgtcctggatacctcagagagcgtggccttaagggtgaagccctttggg
gacctagtcacgcaagtgaaagatttcaccaatcggttcattgataagttaacagacagg
tactaccgttgcgaccgaaacttggtgtggaacgcaggggcgctgcattacagcgatgag
gttgtgctcattaagagcctcacctcgatgcccagcggcaggaatgagttgaagaaccgg
gtgtcagcggtgaactacatcgggaagggcacatacactgactgtgccataaagcgaggc
attgaggagctgctcattggtggctcccatcacaaggagaataaatacctgatcgtggtg
actgatggacaccccttggaagggtacaaggagccctgtggaggcctggatgatgctgcc
aatgaagccaaacacctgggaatcaaagtgttctctgttgccatttctcccaaccatctg
gaccagcggctcaacatcattgccacagatcatacctaccgtcgcaactttactgccacc
agcctgatgccaactcgggagcttgacgtggaggaaaccataaacactatcatcaatatg
attaaagataatgtggagcaagtgtgctgctccttcgagtgccagcctcccagagggccc
cccggacctgccggtgacccaggcaatgagggagaaagaggcaagccaggtcttcccggc
cagaaaggagatgctggagagccaggcaggccaggggacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagtcgaggagaaaagggctcgaggggagccaagggagcc
aagggtgagaagggcaagcgtggaatagatggcatcgatggcatgaagggcgaagctgga
taccctggattacctggctgcaaaggctccccgggatttgatggagttcaaggcccgcct
ggacccaagggagatcctggttcttacggacccaagggacaaaagggggaacctggagaa
gatggaaaacctggccgacaggggatccctggaagccctggagagaagggcgcacctggc
aataggggagaacctggaccagcaggggagacaggagatgagggctctccaggtgcagat
gggccgactggagaacggggcggcaatggagaaagagggcccccaggctcacctggcgac
cgcgggccaagaggagagccgggagaacctggaccatcgggtgaccaagggcgggaagga
cccctcggaccacctggagagccgggtgaggctggacccccaggacccaaggggtacaga
ggagacgatggcccccgtggaaatgagggcccaaagggattacctggagcacccgggttg
cctggagaccctggcttgatgggagaaaggggtgaagacggccctcctgggaatggcaca
attggattcccaggtgcccccgggcagccaggagacagaggtgaccctggcatcaatgga
acaaagggctatgttggtcctaaaggtgatgaaggagaagccggagaccctggcaatgat
aacctaacgccaggtcccaggggcagcaaaggagcaaagggtcgcaggggacctgaaggc
cgtccgggaccaccaggacctgtagggcctccaggaccagatgaatgtgagattttagac
atcatcatgaagatgtgctcttgctgtgagtgtacatgtggacctgtcgatctcctcttc
gtgttggacagttcggagagtatcggcctgcagaacttccagatcgccaaggatttcatc
attaaggtcattgatcggctaagcaaggatgagcgtgtgaagtttgaacctggggagtcc
cgcgtgggagtcgtgcaatacagccatgacaacacgcaggagctggtggccatgggggat
gccaacatagacaacattggggcactcaaacaggcagtcaagaacctgaaatggatagct
ggcggcacatacactggagaggccctgcagttcaccaaggagaacctggtgcagagattc
acctctgacaagcgcgttgccattgtcatcacggatggacgctctgatactctgcgggac
cctaccccgctctcctccctgtgtgatgtcaccccggtggtttcccttgggataggtgac
attttccggaatcccccaaatccagatcacctgaatgacattgcttgtttaagcagaccc
accagaccaggactgtccattcagagggacaactatgccgagctcctggatgacaccttt
ttgcagaatatcacctcatatgtctgccaagagaagaaatgtccagactacacctgtcca
atcacctttgctgggccagcagacatcaccctcctggtggacagctccaccagtgtcggc
agcaagaactttgagaccaccaagaagtttgtgaagctgatggcagagcgtnngcgggtc
tcagtggtccagtacagtggcaggaaccagcagaaggtagaagcacagtttcagtacaac
tacacagtgattgccaaagccattgacaacatggagttcattaatgatgccacggatgtc
aacgccgctctgcggtacgtcatgggactgtaccagaggtcctcccgtggcggggcgaag
aagagggtgctggtgttttccgatggcaactctcaggggatcaccacaagggccattgag
agggccgtgcaggaagctcagcaggccggcattgaaatatatgtgttggcagtgggcagc
caagtcaatgagcccaacatccgtgtcctggtgacggggaagagcgcagactacgatgtg
gtctatggggagcgccacctcttccgcgtgcctgactatacctctctgctgcgtggcgtc
ttctaccaaactgtctccaggaaaatagctgttgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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