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KEGG   Salmo salar (Atlantic salmon): 106585480
Entry
106585480         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106585480
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106585480
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sasa04147]
    106585480
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106585480
Exosome [BR:sasa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   106585480
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106585480
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   106585480
SSDB
Motif
Pfam: Collagen VWA VWA_2
Other DBs
NCBI-GeneID: 106585480
NCBI-ProteinID: XP_014027211
UniProt: A0A1S3PHY3
Position
ssa02:complement(43578058..43659046)
AA seq 603 aa
MDPDNCPADVYIVLDTSESVALRAKPYGSFVDQIKQFALDFVDQLNTRYYRCERNLTWSV
GVLHYSDEVKVMRELTSTKEAQGRAQLKRAIQDIRYIGKGTHTDCAISVATGQLMTGSPL
HGNKYMVVVTDGHPLDGYKEPCGGVAYTVSEARAMDIKIFSVAITPHHLDNRLDSIATDV
QHTHNMSATSEDPQVVRNTVSSIVSTMYKDSESVCCSFECKAPLGSQGPAGAGGGAGTPG
RQGVAGRPGSLGAKGTAGDQGPQGHRGEKGDHGPSGDRGPRGPSGQKGEKGADGVDGKDG
LVGDPGVMGLPGCKGDEGAEGEPGPLGQKGDAGSYGLPGQKGEMGTPGELGVSGVSGANG
AKGEPGPMGGPGNKADRGDEGDFGPSGAPGTEGVGGERGRRGAPGIRGGQGETGDPGSAG
AQGHEGQAGDVGSQGLSGVSGLKGYRGEPGSHGPAGVKGPRGPPGAPGDAGPIGKRGDDG
TQGEGQPGYPGFQGYPGLRGPAGLKGIRGFPGLKGDVGLPGDRGDDNDQPGRGGLQGPKG
YPGLTGENGSPGPVGHPGADECEILEVIQKLCSCCVCECGPVKLLFVLDSSESVGLQNFN
LEK
NT seq 1812 nt   +upstreamnt  +downstreamnt
atggatccagacaactgcccagcagatgtgtacattgttctggacacctcagagagtgtg
gcgctgagagccaagccctacggctcctttgttgatcagatcaagcagtttgccctggac
tttgtggaccagctcaacactagatactaccgctgtgagcgtaacctgacgtggagtgtg
ggagtgctgcactacagtgatgaggtaaaggtgatgagggagctgaccagcaccaaggag
gcccaaggaagagctcagctgaagagagccatacaggacatccgctacatcggcaaggga
acccacaccgactgtgccatctccgtagcaactgggcagctgatgacaggctctcctctc
catggcaacaagtacatggtggtggtgacagatggccacccgctggacggctataaggag
ccgtgtggcggggtggcatacaccgtgtctgaggccagagccatggacattaaaatcttc
agcgtggcaatcactccgcatcacctggacaacagacttgattccatagcaacagatgta
caacacacccataacatgtctgctactagtgaggacccgcaggttgttaggaacaccgtc
agctccatagtgtctaccatgtacaaggattctgaatctgtgtgctgttcgttcgagtgc
aaggctcccctgggatctcaaggccctgctggtgcaggagggggcgcgggaactccagga
cgtcagggggttgccgggagaccgggaagtttgggagcaaaggggactgcaggtgaccag
ggaccccaaggacacagaggagagaagggtgaccatggtccttctggtgacagaggtcca
agaggaccatctggacaaaagggtgagaaaggagcggatggagtggacgggaaagacggc
cttgtgggggaccctggggttatggggctgcctggttgtaaaggagacgagggggcagag
ggggagccaggtcctctgggacagaaaggagatgcaggatcttatggattacctggacaa
aagggagagatgggaacacctggggagctaggggtttctggagtgtctggagccaacgga
gccaagggggagcctggaccaatgggaggacctggaaataaggctgaccgaggagacgaa
ggggactttggaccgtctggagcgccaggcacagagggtgtagggggagagaggggacgg
agaggtgctccaggaataagaggtggtcaaggggagacgggtgacccaggctctgctgga
gcacagggtcatgaaggtcaggctggagacgtgggttcacaaggtctgagtggagtgtct
gggctcaaagggtacagaggagagccgggttctcacggacctgcgggtgttaagggcccc
agggggcctccaggagcaccgggagatgcagggcccattgggaaaaggggtgatgatgga
acacagggagaaggccaacctggatatccagggttccagggataccctggtctgagagga
cctgcaggtttaaagggaatcaggggattcccagggctgaagggtgatgtcggcctgcca
ggtgatcgcggtgatgataacgaccagccaggtcggggaggcctccaggggccaaaagga
taccctggtctcacaggagagaatggatcaccaggcccagtgggccatccgggggcagac
gaatgtgagatcctggaggtcattcagaaactctgctcatgctgtgtgtgtgagtgtggt
ccggtgaagctactctttgtactggacagttcagagagcgttgggctgcagaacttcaac
ctggaaaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (41)   

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