KEGG T08542: 115164896

Salmo trutta (river trout): 115164896

Entry

115164896         CDS       T08542

Name

(RefSeq) retinoic acid receptor RXR-alpha-B-like

K08524

retinoid X receptor alpha

Organism

stru Salmo trutta (river trout)

Pathway

stru03320

PPAR signaling pathway

stru04148

Efferocytosis

stru04920

Adipocytokine signaling pathway

Brite

KEGG Orthology (KO) [BR:stru00001]
09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    115164896
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:stru03000]
    115164896
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:stru03310]
    115164896
Transcription factors [BR:stru03000]
Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    115164896
Nuclear receptors [BR:stru03310]
2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   115164896

SSDB

Motif

Pfam:

Hormone_recep zf-C4 Nuc_recep-AF1

Other DBs

NCBI-GeneID:

115164896

NCBI-ProteinID:

XP_029573659

Ensembl:

ENSSTUG00000036175

Position

27:31099006..31134588

AA seq 511 aa
METKPFLSFGFLKSQCSVAPPPQRWCPGETGGSPKACLCQTGICPLHQHRRTTAPSGQLS
SPSLSSHHAHRGMGAHPLHPSLLIPSSVSSSGPPHSPICTLSSPITSLALPFSVNSRPAG
HHSTSFSMGFCPQLSFPVISSSSSIISTEDIKPPLGQNRVLKVPAQPTCTCLSLNKHICA
ICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYTCRDNKDCLIDKRQRNRCQYCRYQKCL
AMGMKREAVQDERQRAKEKSESEADSLGCANEDMPVERIEEAELAVEPKTKTYIKGSLGV
PTNSPNDPVTNICQATDKQLFTLVEWAKMIPHFSELALDDQVILLRAGWNELLIASFSHR
SITVNDSILLANGLQVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDRSELGCLRAIVLF
NPDSKGLSNPGEVEALREGVYASLEAYSKHKYPDQPGRFAKLLLRLPALRSIGLKFLEHL
FFFKLIGDTPVDTFLMEMLEAPHQMTKQHCS

NT seq 1536 nt +upstreamnt +downstreamnt
atggaaaccaaaccattcctttcttttggcttcctcaagagccagtgctcggtagcccca
cctcctcagcgatggtgcccgggggagacaggcggctcgcccaaagcatgcttgtgccaa
acaggcatttgcccacttcaccagcacaggagaaccacagccccctccggtcagctgtcc
tcaccatcgctcagctcacaccacgcccataggggaatgggtgctcaccccttgcaccca
tctttgctcatcccgtcctctgtgagctcctcaggccctccacactcacccatctgcacc
ctgagctcgcccatcaccagcctggctttgcccttttctgtcaatagccgtccagcggga
caccactctacctccttcagcatgggcttctgcccgcagctcagcttcccagtgatctcc
agtagcagcagcattatcagcacagaggacatcaaacccccactgggccaaaacagagtg
ctaaaggttcctgctcagcccacatgcacctgtctctcccttaacaaacacatctgtgcc
atctgtggagaccgcgcctcaggtaaacactatggagtatatagctgtgaaggttgcaag
ggcttcttcaagagaacagtgaggaaagagctgacgtacacctgtcgagacaacaaggac
tgtctgattgacaagcgccaacgcaaccgatgtcagtactgccgttaccagaagtgtctg
gccatgggcatgaagagagaagctgtgcaggacgagcgccagagagccaaggagaagagt
gagagtgaggcggactcgttaggttgtgctaacgaggacatgcctgtggagaggatagag
gaggcggagctcgctgtggagccaaagaccaagacatacatcaaggggagcctgggcgtg
cccaccaactcacccaacgaccctgtgaccaatatatgccaggcaacagacaagcagctc
tttaccttagtggagtgggccaagatgatcccccacttctcagagctggctctggacgac
caggtcatcctcctaagagcagggtggaatgagctcctcatagcttctttctcccatcgc
tccatcactgtgaacgacagcattctgctggcaaacggactccaagtgcatcgcaacagc
gcccacagtgcaggtgtgggggccatctttgacagagtgctgactgagctggtgtctaaa
atgcgagacatgcagatggacaggtctgagttagggtgccttcgagccatcgtcctcttc
aacccagactccaaaggcttgtcaaacccaggggaggttgaggctctcagagaaggggtg
tatgcttcactggaggcgtactctaaacacaaataccccgatcaaccaggaagatttgcc
aaactgttacttcgattgccagccctacgttccattggcctcaagtttctggagcacctg
ttcttcttcaaactgataggggatacacccgttgacacattcctcatggaaatgttggaa
gctccacaccaaatgacgaaacagcactgcagttaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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