LOCUS XM_030822189 4452 bp mRNA linear PRI 17-SEP-2019
DEFINITION PREDICTED: Nomascus leucogenys histone deacetylase 9 (HDAC9),
transcript variant X3, mRNA.
ACCESSION XM_030822189
VERSION XM_030822189.1
DBLINK BioProject: PRJNA564096
KEYWORDS RefSeq.
SOURCE Nomascus leucogenys (northern white-cheeked gibbon)
ORGANISM Nomascus leucogenys
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hylobatidae; Nomascus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_044391.1) annotated using gene prediction method: Gnomon,
supported by mRNA and EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Nomascus leucogenys Annotation
Release 103
Annotation Version :: 103
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4452
/organism="Nomascus leucogenys"
/mol_type="mRNA"
/isolate="Asia"
/bio_material="CORIELL:NLL605"
/db_xref="taxon:61853"
/chromosome="11"
/sex="female"
/tissue_type="EB transformed lymphoblast cell line"
/dev_stage="adult"
gene 1..4452
/gene="HDAC9"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 mRNAs, 69 ESTs, 4 Proteins, and
99% coverage of the annotated genomic feature by RNAseq
alignments, including 6 samples with support for all
annotated introns"
/db_xref="GeneID:100606143"
CDS 356..2137
/gene="HDAC9"
/codon_start=1
/product="histone deacetylase 9 isoform X3"
/protein_id="XP_030678049.1"
/db_xref="GeneID:100606143"
/translation="MHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVVREK
QLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKLQQELLAIKQQQEL
LEKEQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSAT
KDTPTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDAKDDFPL
RKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGS
GPSSPNNGPTGSVTENETSVLPPTPHAEQMVSQQRILIHEDSMNLLSLYTSPSLPNIT
LGLPAVPSQLNASNSLKEKQKCETQTLRQGVPLPGQYGGSIPASSSHPHVTLEGKPPN
SSHQALLQHLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLN
RTQSAPLPQSTLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEA
EEELQGDQAMQEDRAPSSGNSTRSDSSACVDDTLGQVGAVKVKEEPVDSDEDAQIQEM
ESGEQAAFMQQVIGKDLAPGFVIKVII"
misc_feature 467..736
/gene="HDAC9"
/note="Glutamine-rich N-terminal helical domain of HDAC9,
a Class IIa histone deacetylase; Region:
ClassIIa_HDAC9_Gln-rich-N; cd10163"
/db_xref="CDD:197399"
misc_feature order(470..475,479..484,491..493,503..505,512..514,
524..526,533..535,545..550,554..559,566..571,578..580,
590..592,599..601,611..613,632..634,644..646)
/gene="HDAC9"
/note="dimer interface A, C [polypeptide binding]; other
site"
/db_xref="CDD:197399"
misc_feature order(479..484,491..493,503..505,512..517,524..529,
533..538,545..550,554..559,566..574,578..586,590..595,
599..607,611..616,632..637,644..652)
/gene="HDAC9"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:197399"
misc_feature order(503..505,515..517,527..529,536..538,548..550,
557..559,569..574,581..586,593..595,605..607,614..616)
/gene="HDAC9"
/note="dimer interface A, D [polypeptide binding]; other
site"
/db_xref="CDD:197399"
misc_feature order(557..559,569..571,602..607,614..616,635..637,
647..652)
/gene="HDAC9"
/note="dimer interface A, B [polypeptide binding]; other
site"
/db_xref="CDD:197399"
ORIGIN
1 gctttagcca acttgagctg agagagactg agaaaggggg aagagaggca cagacacaga
61 taggagaagg gcaccggctg gagccacttg caggactgag ggtttttgca acaaaaccct
121 agcagcctga agaactctaa gccaggttta attggtttct ttttctcgtg ggtagactta
181 ataattttct acgtattctg acaaagaaat aaccccgaag cacgttccta tttcccacct
241 gcttgtagtt tccgggataa cctaaactcc agagagctat agcatccact ctgtcctttc
301 tgctttgcac acagatgggg tggctggacg agagcagctc ttggctcagc aaagaatgca
361 cagtatgatc agctcagtgg atgtgaagtc agaagttcct gtgggcctgg agcccatctc
421 acctttagac ctaaggacag acctcaggat gatgatgccc gtggtggacc ctgttgtccg
481 tgagaagcag ttgcagcagg aattacttct tatccagcag cagcaacaaa tccagaagca
541 gctcctgata gcagagtttc agaaacagca tgaaaacttg acacggcagc accaggctca
601 gcttcaggag catatcaagt tgcaacagga acttctagcc ataaaacagc aacaagaact
661 cctagaaaag gagcagaaac tggagcagca gaggcaagaa caggaagtag agaggcatcg
721 cagagaacag cagcttcctc ctctcagagg caaagataga ggacgagaaa gggcagtggc
781 aagtacagaa gtaaagcaga agcttcaaga attcctattg agtaaatcag caacgaaaga
841 cactccaact aatggaaaaa atcattccgt gagccgccat cccaagctct ggtacacggc
901 tgcccaccac acatcattgg atcaaagctc tccacccctt agtggaacat ctccatccta
961 caagtacaca ttaccaggag cacaagatgc aaaggatgat ttcccccttc gaaaaactgc
1021 ctctgagccc aacttgaagg tgcggtccag gttaaaacag aaagtggcag agaggagaag
1081 cagcccctta ctcaggcgga aggatggaaa tgttgtcact tcattcaaga agcgaatgtt
1141 tgaggtgaca gaatcctcag tcagtagcag ttctccaggc tctggtccca gttcaccaaa
1201 caatgggcca actggaagtg ttactgaaaa tgagacttcg gttttgcccc ctacccctca
1261 tgctgagcaa atggtttcac agcaacgcat tctaattcat gaagattcca tgaacctgct
1321 aagcctttat acctctcctt ctttgcccaa cattaccttg gggcttcccg cagtgccatc
1381 ccagctcaat gcttcgaatt cactcaaaga aaagcagaag tgtgagacgc agacgcttag
1441 gcaaggtgtt cctctgcctg ggcagtatgg aggcagcatc ccggcatctt ccagccaccc
1501 tcatgttact ttagagggaa agccacccaa cagcagccac caggctctcc tgcagcattt
1561 attattgaaa gaacaaatgc gacagcaaaa gcttcttgta gctggtggag ttcccttaca
1621 tcctcagtct cccttggcaa caaaagagag aatttcacct ggcattagag gtacccacaa
1681 attgccccgt cacagacccc tgaaccgaac ccagtctgca cctttgcctc agagcacgtt
1741 ggctcagctg gtcattcaac agcaacacca gcaattcttg gagaagcaga agcaatacca
1801 gcagcagatc cacatgaaca aactgctttc gaaatctatt gaacaactga agcaaccagg
1861 cagtcacctt gaggaagcgg aggaagagct tcagggggac caggcgatgc aggaagacag
1921 agcgccctct agtggcaaca gcactaggag cgacagcagt gcttgtgtgg atgacacact
1981 gggacaagtt ggggctgtga aggtcaagga ggaaccagtg gacagtgatg aagatgctca
2041 gatccaggaa atggaatctg gggagcaggc tgcttttatg caacaggtaa taggcaaaga
2101 tttagctcca ggatttgtaa ttaaagtcat tatctgaaca tgaaatgcat tgcagttttg
2161 gtaaatggat atgatttcct atcagtttat atttctctat gatttgagtt cagtgtttaa
2221 ggattctaac taatgcagat atatgtatat atctatatag aggtctctct atatactgat
2281 ctctatatag atatcaaggt ttcattgaaa atccactggt aaggaaatac ctgttacact
2341 aaaattatga tacgtaatat ctgaacagtt aataggcttt aaatttatcc caaagcctgc
2401 aacaccaatt acttctaagg aaaacgaaat cactgttatt ttgagtttat gtgttgagat
2461 cagtgactgc tggatagtct cccagtctga tcaatgaagc attcgattag tttttgattt
2521 ttttgcaaca tctagaattt aattttcaca tcactgtaca taatgtatca tactatagtc
2581 ttgaacactg ttaaaggtag tctgcccctt ccttcctctc tcttttttta gttaagtaga
2641 agtgttctgg tcaccatgcc agtagtccta ggttattgtg taggttgcaa ttgaacatat
2701 taagaataca ggtggcttta aatatataga tgcaaattgc agcactactt taaatattag
2761 attatgtctc acatagcact gctcatttta cttttatttt gtgtaatttg atgacactgt
2821 ctgtcaaaaa agagcaaatg aagcagatgc aaatgttggt gagaagtaat gtgcagcatt
2881 atggtccaat cagatacaat attgtatcta caattgcaaa aaacacagta acaggatgaa
2941 tattatctga tatcaagtca aaatcagttt gaaaagaaga aggtgtatca tattttatat
3001 tgtcactaga atctgttaag tataattcca taatgacatg ggcatatacc ataacattct
3061 ggcaaataag aattagaaaa gataggttta acaaaagaat ttacttgtac ataatgcacc
3121 ttcaggagga ctacgtcctt tgatgctgta aaatacaaac aactttgaag gcaacagaag
3181 acactgttta ttcaagtcag ttctttgtca ggttcctgct gttctacaga aaagtgattc
3241 tgtgaggctg aacaggaaat gccttgtgga aacaggaagt ccaagtgatt catgtactga
3301 ggaatgtagg aaaaaaatct gaggatagtg ttttactctt tctgttttta aagggcactc
3361 tatgaattga tttattgtct aagaaaataa caccagaagt agggaaattg ttacggaagc
3421 ttttcactgg aacatttcct tcatattccc ttttgatatg tttaccttgt tttataggtt
3481 tacttttgtt aagctagtta aaggttcgtt gtattaagac cctttaatat ggataatcca
3541 aattgaccta gaatctttgt gaggtttttt ctattaaaat atttatattt ctaaatccga
3601 ggtatttcaa ggtgtagtat cctatttcaa aggagatata gcagttttgc caaatgtaga
3661 cattgttcaa ctgtatgtta ttggcacgtg ttgtttacat tttgctgtga catttaaaaa
3721 tatttcttta aaaatgttac tgctaaagat acattatcct tttttaaaaa gtctccattc
3781 aaattaaatt aacataacta gaagttagaa agtttaaaac ttttccatat aatgaaagtc
3841 cttctgataa tttgacaaat agctataata ggaacactcc ctatcaccaa catattttgg
3901 ttagtatatt ccttcatatt aaaatgactt tttgtcagtt gttttgcatt aaaaatatgg
3961 catgcctaag ataaaattgt atattttttc catctcataa atattcattt tcttcaaagt
4021 cttttttcaa tctcataaaa aagggatagt gcatctttta aaatacattt tatttgggga
4081 ggaacatgtg gctgagcaga cttttgtata atattacttc aaagatatgt aatcacaaac
4141 aaaaaaaact attttttata atgtcattgg agagagtttc atcagtacag ttggtggacg
4201 ttaattgttt gaatttgata gtctttgaat ttactcaaga aactacctgg aaccagtgaa
4261 aaggaaagct ggacttaaat aatcttagaa ttaattgata aatgtctctt ttaaaatcta
4321 ctgtatttat tataatttac acccttgaag gtgatctctt gttttgtgtt gtaaatatat
4381 tgtttgtatg tttcccttct tgccttctgt tataagtctc ttcctttctc aaataaagtt
4441 ttttttaaaa ga
//