LOCUS       XM_029661396            3770 bp    mRNA    linear   VRT 07-MAY-2024
DEFINITION  PREDICTED: Oncorhynchus nerka chondroitin polymerizing factor 2
            (chpf2), mRNA.
ACCESSION   XM_029661396
VERSION     XM_029661396.2
DBLINK      BioProject: PRJNA1106039
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus nerka (sockeye salmon)
  ORGANISM  Oncorhynchus nerka
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 7, 2024 this sequence version replaced XM_029661396.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034236695.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/02/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Oncorhynchus nerka"
                     /mol_type="mRNA"
                     /isolate="Pitt River"
                     /db_xref="taxon:8023"
                     /sex="male"
                     /tissue_type="multiple tissues"
                     /dev_stage="adult"
                     /geo_loc_name="Canada: Langley BC"
                     /collection_date="2020-06-06"
                     /collected_by="Lawrence J. Albright"
                     /linkage_group="LG6"
     gene            1..3770
                     /gene="chpf2"
                     /note="chondroitin polymerizing factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 Proteins"
                     /db_xref="GeneID:115130346"
     CDS             101..2398
                     /gene="chpf2"
                     /codon_start=1
                     /product="chondroitin sulfate glucuronyltransferase"
                     /protein_id="XP_029517256.1"
                     /db_xref="GeneID:115130346"
                     /translation="MRLSSFLAVFRPALPLILGLSLGCSLSLLMVSWTQGDTDDSCGD
                     ELGNGGLFLGSNRGDPPEDQRGGPGNEDFQPRIVPYHKDPNKPHKKVLRTRYIHTELG
                     IRERLLVGVLTSRATLNTLAVAVNRTVAHHFHRTFFFTGLRSPKVPHGMAVVAHGDDR
                     PVWLMYETVRHLHQHYGLDYDWFFLAQDDTYMQAERLAELVGHLSAGQDLYMGRAEEF
                     IGGEERARYCHGGYGYLLSRSLLARLQPHLDTCRNDILSVRPDEWLGRCIIDYLGLSC
                     VEVHQEMTYRYFELGKNADPEREDRAQFKNAFTVHPVSEPSLMYRLHKRFSQIELDWT
                     YLQIQQLQVQINNLSELTPEGKAGATWPIGVNPPFRPKTRFEVINWEYFTEEHIYSCP
                     DSSPKCELRGADRADVSAVLETAVERLNERYQPQLRFRKRHLLNGYRRFDPTRGMEYV
                     LDLALEAFTQKGHNQVIAKRVSLLRPLSTIEIIPMPYVTEATRVQVILPVTANEQDYV
                     SNFLDMYVMNTLDTHDNVLLTFLFVYDPFDAQRISQADVFAGIKAMIGEVEKRYGDVK
                     IPWISVKTEVPSQVKLMDIISKKHPVDTLFFLASVWTEVNADFLNRCRMNAISNWQVF
                     FPIHFQEFSPAIVYRDQQPSAASSFTAEALRDGRFDRHVFEEACFYNADYMAARTKMA
                     ADILDNDELLESMDVYEIFVRYSGLHVFRAVEPALVQKYVRRACNPRFSEDIYHRCVL
                     SNLEGLASRSHLAMALFEQEQANST"
     misc_feature    <644..>919
                     /gene="chpf2"
                     /note="Galactosyltransferase; Region: Galactosyl_T;
                     cl21608"
                     /db_xref="CDD:473923"
     misc_feature    839..2356
                     /gene="chpf2"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     Region: CHGN; pfam05679"
                     /db_xref="CDD:461712"
     polyA_site      3770
                     /gene="chpf2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acatggtttt ggaacagcat tctgcaaatc attatataga aaacctcaga ggaacgtcac
       61 ataacacttt attgacaaca gccaagtcca ccgcttcgct atgcgtctct cctccttcct
      121 ggccgtgttc aggcctgctc ttccccttat cctggggctc tctttaggat gcagcctgag
      181 cctgctgatg gtctcctgga cccagggaga cacagatgac tcgtgtggag atgaactggg
      241 caatgggggt ctcttcctgg gcagcaatag gggagacccc ccagaggacc agagaggtgg
      301 tcctgggaat gaggacttcc agccccgcat cgtaccatac cacaaggacc ccaacaaacc
      361 acacaagaag gtcctcagga cgcgctacat ccacactgaa ctgggaatcc gagaacgcct
      421 cctggtgggt gtgctgacct cgcgggccac tcttaacacg ctggccgtgg cggtgaaccg
      481 caccgtggcc caccatttcc atcgcacctt cttcttcact ggcctgcgca gccccaaggt
      541 cccccatggc atggcggtgg tggcccacgg cgacgaccgg cccgtgtggc tgatgtacga
      601 gacggtgcgc cacttgcacc agcactacgg cttggactac gactggttct tcctggccca
      661 ggacgacacc tacatgcagg ccgagaggct agccgagctg gtgggccacc tcagcgccgg
      721 tcaggacctc tacatgggcc gggctgagga gttcatcggt ggggaggaga gggccaggta
      781 ctgccacggg ggttacggct acctgctctc ccggagcttg ctggcccgtc tgcagcccca
      841 cctggacacc tgccgcaatg acatcctcag cgtgaggcct gacgagtggc tgggccgctg
      901 catcatcgac tacctgggtc tgagctgtgt agaggtgcac caggagatga cgtatcgcta
      961 ctttgagctg gggaagaatg cagacccaga gcgagaggac agagcccagt ttaagaatgc
     1021 cttcacggtc caccctgtgt cagaacccag cctcatgtac cgcctgcaca aacgcttcag
     1081 ccagatcgaa ctggactgga cctacctaca gatacagcag ctgcaggtcc agatcaacaa
     1141 cctgagtgag ctgacaccag aggggaaggc gggggccacc tggcccatcg gggtcaaccc
     1201 acctttcagg cccaaaacgc gattcgaggt cataaactgg gagtacttca cagaggaaca
     1261 catttactcg tgccctgaca gctcccccaa gtgtgagctg cgtggcgcag accgggccga
     1321 cgtgagcgcc gtgctggaga cggccgtgga gcgcctcaac gagcgttatc agccccagct
     1381 gcgcttcagg aaacggcatc tgctcaacgg ctaccggcgc ttcgacccca ctcgaggcat
     1441 ggagtacgtg ctggacctgg ctctggaggc tttcacccag aagggtcaca accaggtcat
     1501 tgccaagcgg gtcagcctgc tccgccctct cagcaccatc gagatcatcc ccatgcccta
     1561 cgtgacggag gccacccggg tgcaggttat cctgccagtc acggccaacg agcaggacta
     1621 tgtgagcaac ttcctggaca tgtacgtgat gaacactctg gacacgcatg acaacgtcct
     1681 gctcaccttc ctgtttgtct acgacccctt cgacgcccaa cggatcagtc aggctgacgt
     1741 gttcgccggc atcaaggcca tgattggcga ggtggagaag cgctacggtg acgtgaagat
     1801 cccctggatc agcgtgaaga cggaggtgcc gtcgcaagtc aagctgatgg acatcatctc
     1861 caagaagcac ccggtggata cgctcttctt cctggcctcg gtgtggaccg aggtcaacgc
     1921 tgacttcctc aatcgctgcc gcatgaacgc catcagcaac tggcaggtgt tcttccccat
     1981 ccacttccag gaattcagtc cggctatcgt gtaccgcgac cagcagcctt cagccgcctc
     2041 ctccttcacc gccgaggcgc tgcgcgatgg acgcttcgac cgccacgtct tcgaagaggc
     2101 ctgcttctac aacgccgact acatggcggc gcgcaccaag atggccgccg acatcctaga
     2161 caacgatgag ctgctggaga gcatggacgt gtacgagatc tttgtgcgct actcgggctt
     2221 gcacgtgttc cgggcggtgg agccagcgct agtgcagaag tatgtgcggc gggcgtgcaa
     2281 cccgcgcttc agtgaggaca tctaccaccg ctgtgtgctc agtaacctgg agggcctggc
     2341 ctcgcgatcc cacctggcca tggccctgtt tgagcaggaa caggccaaca gcacctaggt
     2401 ggtctagtgg ggctcttcca ctgcagcact ggtatcacgc tagacttttc tggaccaggc
     2461 ctcagaagac aacatctatg ggcctaacac tggtgcagtg cctggcagtg gaaatgcacc
     2521 atactgtagg tctaccatct aatgacatta tgaacctcaa ccacactgcc tcgactttta
     2581 gacaaggcat gttatgggat gcttaatctt cagacggatc cctaaggacc aaggacccat
     2641 gtgcaatctt aggcctgcga agactgagga gcaatgttac aacgtgtatt cctgctaact
     2701 gtgtgtgcag gcgaacagaa ctctgtgctt tcacaccaat ggtagtccaa ggagaggctc
     2761 tattgggagg tgatgaatga acagcattga tgtctattta gggctgggca gtatactgta
     2821 ttttactatg tacttttatt gatgcacgga ccagtttgtg tttatacttt atcttctata
     2881 acggtattcg tgatacgtca ctctggctcg tgtaatgtca gtttttatag tttactccgt
     2941 ttgctacttg agttgtctct cttctcctgc atgccacttc cccatgtgct tccctgccaa
     3001 tccctgcccc cgtcactgtt ggctgtcaat gctgtgccgt tcactttgtc tgcgtggtca
     3061 gatgttagat gttagtgatt tccactttgc ttaatataaa tccacaaaag ttctataatt
     3121 acattatttt ttgtatatta cagtctgcaa actagtcatt tgtcttttga gagatgctaa
     3181 atagtgtttg ggctaattgc tagttagctg actagcaagc tagctaaatg tactcagaaa
     3241 acgtagctag ctaataaaac ttgataccag tactggtgta ggcctagttc agcatgttgt
     3301 ttatgcaaaa gtatcttcta aatcagagat gaagtaagag aaaacatgta atgtaacatt
     3361 agggtccact gggaaacact gaccaacact ttggttccta ccatgtcaca ataattcttc
     3421 cctggctttt tcattcattg tcatgtcaaa caacaatgta ttcaaagtac tgtccatcca
     3481 tattccaact atagaattag aataattatt ctatttccat gattccaaca gttcaccaat
     3541 aaggactata ttttttgccc atatcatgca gccccacgtg gcagtgtgta aatgataaca
     3601 aatgagtgca ggaaatgcag aaatatcgga taagatattt tggccatttt gcccagccct
     3661 atgtctgatg ttttgttttg ccttgagaaa atcactatga gctatatgtc ttccttcatg
     3721 actgtactga tttatgatgc taatactgga attaaagata attaagtgtc
//