LOCUS XM_016236633 3090 bp mRNA linear VRT 19-APR-2016
DEFINITION PREDICTED: Sinocyclocheilus grahami syntaxin-16-like
(LOC107554194), transcript variant X4, mRNA.
ACCESSION XM_016236633
VERSION XM_016236633.1
DBLINK BioProject: PRJNA316320
KEYWORDS RefSeq.
SOURCE Sinocyclocheilus grahami
ORGANISM Sinocyclocheilus grahami
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_015505672.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Sinocyclocheilus grahami Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3090
/organism="Sinocyclocheilus grahami"
/mol_type="mRNA"
/isolate="Dianchi"
/db_xref="taxon:75366"
/chromosome="Unknown"
/sex="female"
/tissue_type="muscle"
/dev_stage="adult"
/geo_loc_name="China: Lake Dianchi, Yunnan"
/collection_date="2012-08-15"
/note="surface-dwelling"
gene 1..3090
/gene="LOC107554194"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:107554194"
CDS 321..1232
/gene="LOC107554194"
/codon_start=1
/product="syntaxin-16-like isoform X4"
/protein_id="XP_016092119.1"
/db_xref="GeneID:107554194"
/translation="MATRRLTDAFLLMRNNAIQNRQILAEQLADDRMALVSGISLDPE
AAIGVTKRLPPKWVEGVDEIQYEITRIRQKMKELASLHDKHMNRPTLDDSSEEEHAIE
ITTQEITQMFHRCQRAVTGLQTQSRHCTEQENRLLTNVVSSLAQSLQELSINFRHTQS
SYLKRMKNREERSKHFFDSGPLVEEDEDIALYDRGFTDDQLVLVQQNTVVVDEREREI
RQIVQSISDLNEIFRDLAGMVVEQGTVLDRIDFNVEQACVKTEEGLQQLQKAEQYQKK
NRKMLVILILFVIVVVLILILFGTKFR"
misc_feature 474..1157
/gene="LOC107554194"
/note="t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion]; Region: COG5325"
/db_xref="CDD:227635"
misc_feature 951..1127
/gene="LOC107554194"
/note="SNARE motif of syntaxin 16; Region:
SNARE_syntaxin16; cd15845"
/db_xref="CDD:277198"
misc_feature order(954..956,960..965,969..986,990..998,1002..1007,
1011..1019,1023..1028,1032..1040,1044..1049,1053..1070,
1074..1091,1095..1112,1116..1124)
/gene="LOC107554194"
/note="heterotetramer interface [polypeptide binding];
other site"
/db_xref="CDD:277198"
misc_feature 1044..1046
/gene="LOC107554194"
/note="zero layer; other site"
/db_xref="CDD:277198"
ORIGIN
1 cgtgttccac ctcacggaag tcacagagat gatccattag cgccctaaaa ccaagcgttg
61 tcggtcttgt aatgttgcgg tactccacag gatacagact caggactgtc tcggtctaaa
121 agagagccgg tgttgtccgg aaactctcga aaccggaggc gctgagttgg tgggcgagcc
181 tgtctgccgt tttgcaggct agctcgctag tcaagtagcc gtccagctgc cttggcgacg
241 agctgagtaa ctaatctaaa gacagccgtc gaggcggctt gcagttattt ccttttacgg
301 tcgccttgta gtgcgtagcc atggcaactc ggcgactgac cgatgccttc ttattaatgc
361 ggaacaatgc aatccaaaac cggcagattt tggctgagca attggccgat gaccgtatgg
421 ctctggtgtc aggcatcagt ttggatccag aggccgctat tggtgtcacg aagagactcc
481 cacctaaatg ggtggaggga gtggatgaga ttcagtatga aatcacacgt attcgtcaga
541 agatgaagga actggccagt ctgcacgaca aacacatgaa ccggcccacg ctggatgaca
601 gcagtgaaga ggagcacgcc atcgagatca ctacacagga aattacacag atgtttcaca
661 ggtgccagcg ggctgtgacg gggctccaga ctcagagtcg tcattgtaca gagcaagaaa
721 accggctgtt gactaatgtg gtctcctcac tggcccagag ccttcaagaa ctgtcaatca
781 acttcagaca cacacagtca agctacctga aacggatgaa aaaccgtgaa gaaaggtcca
841 agcacttttt tgactctggt cctcttgtgg aggaagatga agatattgcg ctatatgaca
901 gaggatttac agatgaccaa ctagtgctgg ttcagcaaaa cacagtggtg gtagacgagc
961 gagagagaga aattcgacaa attgttcagt ccatctctga ccttaatgag atatttagag
1021 atcttgctgg aatggttgtt gaacagggca cagtcctcga cagaatcgac ttcaatgtgg
1081 agcaagcttg tgtcaaaaca gaggagggtc tgcagcagtt gcagaaggct gaacagtacc
1141 agaagaaaaa ccgcaagatg ctggtcattt taattctctt tgtcatagtt gttgttctaa
1201 tccttattct gttcgggaca aagtttagat gaataattcc atggcctcta ggagggatct
1261 acctgtatgt atgagagaaa ctgatgtgtg tgtgaagaag gtttagaagg tgcttccgtt
1321 ttaaaatact acaccacaaa gtgaagataa ggacgccccc tgctgaccaa caagtgcagt
1381 gtgcggagac atttgtgtgt ttatttctgt tgtgagagcg taagtactcg ggttcctttc
1441 agagggccat ttttcttcat tttttcacac aagcacagta attaggagtt tggatgtgat
1501 atggcagcat gttcaatccc aactgccctt gtcgtctaat ttaaagagta aacaggaaga
1561 tgatgggaaa gattaggaat cctcggaaga tgatcatata tgcttgggtg aatttcttca
1621 aaataatgtc caggtcatat ttttttgcta gtttccctct caactctcat tactgtaatg
1681 cagaattaaa tgatttaaat caaaagtaca gttgcagtat tacagtattt gtttactgta
1741 taatagtggt acaaatctaa tgggaatcac cattgagaat aatggaaagt aaattagaat
1801 acgttaaagt aaatgagact ttagggggga ttgggcatgg tcatgaaaat aatttcatga
1861 tgcatattct ttatatatat atgtattcat ttgaatatgg ggttaaatgt cacctgaacg
1921 tgtttcctaa agattcaccc actttcttgg tttcagtagt gagcatctac agtgaaacct
1981 gtcataaact gccttcgaat cagaccttgc ttgtaaggtt aggatgtgtg tatttgatgc
2041 aagcccaaga tgacattata aactctgttt tcctgtaatt taatctgaca ttttgctgtg
2101 tatatgtgtg tgtttgagag gagacgcatt gacactccag tcaaccacga cagaaactga
2161 ggaatgagga acatatactc aaagcattta ccatgttcag tttttattgt ttagtttttt
2221 tatgtggtaa aatgaaaatc attgggatta tgacaggggt tgaatgaact gaatgttaca
2281 ttgtccttta cgaacgtcca ttactgagag ttaattcctc tgttcacgtc agtggaggcg
2341 tttaatgcac catcatgtgt ttatctacgt tttaatgaca gtgttgttat gaaatcagta
2401 tcatttcagt gaaaagcggg agtgattcat caagattttt tgattcactc cgttccttgc
2461 cttaaagagt gaacatttgt gtgctgaact tggaatgttt ttaaagcttt ccttgtccat
2521 gtttcattgg ctggtgttgt cactgttgta tccttcagtc tgacctttga acttaaactg
2581 aactttgacc ttcagtctca gactgaagct cagtggggtc ggctgactga ctataactac
2641 tgttccctgg acaagatgaa ataatttatt ttagatgcaa acacgtgtat agagtttatg
2701 gagttctatt gttgtccgtt ggtagtccaa agtcctttaa tttctttgtt tattattgta
2761 atgatgattt actttctaaa atcaattcct gttggctttt gtgaagggta attgcaccac
2821 tactgtatga tggggtaaaa tcacgttgtt gaccatatta ttttataaat acagagacag
2881 tttattcttg ttattttaga aggtttgaaa aaatataact gcccattcaa ggcttaaatc
2941 catttcaagt gatttattcc atggttttgt gatttttcac atggttttta tatgtgaata
3001 taatattttt ctgccattac ggtactactg tatgctatat gaaccttctg taaacgctga
3061 acaggtttct aatgaaatta aaacaaacaa
//