LOCUS XM_016236632 3102 bp mRNA linear VRT 19-APR-2016
DEFINITION PREDICTED: Sinocyclocheilus grahami syntaxin-16-like
(LOC107554194), transcript variant X3, mRNA.
ACCESSION XM_016236632
VERSION XM_016236632.1
DBLINK BioProject: PRJNA316320
KEYWORDS RefSeq.
SOURCE Sinocyclocheilus grahami
ORGANISM Sinocyclocheilus grahami
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_015505672.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Sinocyclocheilus grahami Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3102
/organism="Sinocyclocheilus grahami"
/mol_type="mRNA"
/isolate="Dianchi"
/db_xref="taxon:75366"
/chromosome="Unknown"
/sex="female"
/tissue_type="muscle"
/dev_stage="adult"
/geo_loc_name="China: Lake Dianchi, Yunnan"
/collection_date="2012-08-15"
/note="surface-dwelling"
gene 1..3102
/gene="LOC107554194"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:107554194"
CDS 321..1244
/gene="LOC107554194"
/codon_start=1
/product="syntaxin-16-like isoform X3"
/protein_id="XP_016092118.1"
/db_xref="GeneID:107554194"
/translation="MATRRLTDAFLLMRNNAIQNRQILAEQEFDELADDRMALVSGIS
LDPEAAIGVTKRLPPKWVEGVDEIQYEITRIRQKMKELASLHDKHMNRPTLDDSSEEE
HAIEITTQEITQMFHRCQRAVTGLQTQSRHCTEQENRLLTNVVSSLAQSLQELSINFR
HTQSSYLKRMKNREERSKHFFDSGPLVEEDEDIALYDRGFTDDQLVLVQQNTVVVDER
EREIRQIVQSISDLNEIFRDLAGMVVEQGTVLDRIDFNVEQACVKTEEGLQQLQKAEQ
YQKKNRKMLVILILFVIVVVLILILFGTKFR"
misc_feature 486..1169
/gene="LOC107554194"
/note="t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion]; Region: COG5325"
/db_xref="CDD:227635"
misc_feature 963..1139
/gene="LOC107554194"
/note="SNARE motif of syntaxin 16; Region:
SNARE_syntaxin16; cd15845"
/db_xref="CDD:277198"
misc_feature order(966..968,972..977,981..998,1002..1010,1014..1019,
1023..1031,1035..1040,1044..1052,1056..1061,1065..1082,
1086..1103,1107..1124,1128..1136)
/gene="LOC107554194"
/note="heterotetramer interface [polypeptide binding];
other site"
/db_xref="CDD:277198"
misc_feature 1056..1058
/gene="LOC107554194"
/note="zero layer; other site"
/db_xref="CDD:277198"
ORIGIN
1 cgtgttccac ctcacggaag tcacagagat gatccattag cgccctaaaa ccaagcgttg
61 tcggtcttgt aatgttgcgg tactccacag gatacagact caggactgtc tcggtctaaa
121 agagagccgg tgttgtccgg aaactctcga aaccggaggc gctgagttgg tgggcgagcc
181 tgtctgccgt tttgcaggct agctcgctag tcaagtagcc gtccagctgc cttggcgacg
241 agctgagtaa ctaatctaaa gacagccgtc gaggcggctt gcagttattt ccttttacgg
301 tcgccttgta gtgcgtagcc atggcaactc ggcgactgac cgatgccttc ttattaatgc
361 ggaacaatgc aatccaaaac cggcagattt tggctgagca agagtttgat gagttggccg
421 atgaccgtat ggctctggtg tcaggcatca gtttggatcc agaggccgct attggtgtca
481 cgaagagact cccacctaaa tgggtggagg gagtggatga gattcagtat gaaatcacac
541 gtattcgtca gaagatgaag gaactggcca gtctgcacga caaacacatg aaccggccca
601 cgctggatga cagcagtgaa gaggagcacg ccatcgagat cactacacag gaaattacac
661 agatgtttca caggtgccag cgggctgtga cggggctcca gactcagagt cgtcattgta
721 cagagcaaga aaaccggctg ttgactaatg tggtctcctc actggcccag agccttcaag
781 aactgtcaat caacttcaga cacacacagt caagctacct gaaacggatg aaaaaccgtg
841 aagaaaggtc caagcacttt tttgactctg gtcctcttgt ggaggaagat gaagatattg
901 cgctatatga cagaggattt acagatgacc aactagtgct ggttcagcaa aacacagtgg
961 tggtagacga gcgagagaga gaaattcgac aaattgttca gtccatctct gaccttaatg
1021 agatatttag agatcttgct ggaatggttg ttgaacaggg cacagtcctc gacagaatcg
1081 acttcaatgt ggagcaagct tgtgtcaaaa cagaggaggg tctgcagcag ttgcagaagg
1141 ctgaacagta ccagaagaaa aaccgcaaga tgctggtcat tttaattctc tttgtcatag
1201 ttgttgttct aatccttatt ctgttcggga caaagtttag atgaataatt ccatggcctc
1261 taggagggat ctacctgtat gtatgagaga aactgatgtg tgtgtgaaga aggtttagaa
1321 ggtgcttccg ttttaaaata ctacaccaca aagtgaagat aaggacgccc cctgctgacc
1381 aacaagtgca gtgtgcggag acatttgtgt gtttatttct gttgtgagag cgtaagtact
1441 cgggttcctt tcagagggcc atttttcttc attttttcac acaagcacag taattaggag
1501 tttggatgtg atatggcagc atgttcaatc ccaactgccc ttgtcgtcta atttaaagag
1561 taaacaggaa gatgatggga aagattagga atcctcggaa gatgatcata tatgcttggg
1621 tgaatttctt caaaataatg tccaggtcat atttttttgc tagtttccct ctcaactctc
1681 attactgtaa tgcagaatta aatgatttaa atcaaaagta cagttgcagt attacagtat
1741 ttgtttactg tataatagtg gtacaaatct aatgggaatc accattgaga ataatggaaa
1801 gtaaattaga atacgttaaa gtaaatgaga ctttaggggg gattgggcat ggtcatgaaa
1861 ataatttcat gatgcatatt ctttatatat atatgtattc atttgaatat ggggttaaat
1921 gtcacctgaa cgtgtttcct aaagattcac ccactttctt ggtttcagta gtgagcatct
1981 acagtgaaac ctgtcataaa ctgccttcga atcagacctt gcttgtaagg ttaggatgtg
2041 tgtatttgat gcaagcccaa gatgacatta taaactctgt tttcctgtaa tttaatctga
2101 cattttgctg tgtatatgtg tgtgtttgag aggagacgca ttgacactcc agtcaaccac
2161 gacagaaact gaggaatgag gaacatatac tcaaagcatt taccatgttc agtttttatt
2221 gtttagtttt tttatgtggt aaaatgaaaa tcattgggat tatgacaggg gttgaatgaa
2281 ctgaatgtta cattgtcctt tacgaacgtc cattactgag agttaattcc tctgttcacg
2341 tcagtggagg cgtttaatgc accatcatgt gtttatctac gttttaatga cagtgttgtt
2401 atgaaatcag tatcatttca gtgaaaagcg ggagtgattc atcaagattt tttgattcac
2461 tccgttcctt gccttaaaga gtgaacattt gtgtgctgaa cttggaatgt ttttaaagct
2521 ttccttgtcc atgtttcatt ggctggtgtt gtcactgttg tatccttcag tctgaccttt
2581 gaacttaaac tgaactttga ccttcagtct cagactgaag ctcagtgggg tcggctgact
2641 gactataact actgttccct ggacaagatg aaataattta ttttagatgc aaacacgtgt
2701 atagagttta tggagttcta ttgttgtccg ttggtagtcc aaagtccttt aatttctttg
2761 tttattattg taatgatgat ttactttcta aaatcaattc ctgttggctt ttgtgaaggg
2821 taattgcacc actactgtat gatggggtaa aatcacgttg ttgaccatat tattttataa
2881 atacagagac agtttattct tgttatttta gaaggtttga aaaaatataa ctgcccattc
2941 aaggcttaaa tccatttcaa gtgatttatt ccatggtttt gtgatttttc acatggtttt
3001 tatatgtgaa tataatattt ttctgccatt acggtactac tgtatgctat atgaaccttc
3061 tgtaaacgct gaacaggttt ctaatgaaat taaaacaaac aa
//