LOCUS XM_016236631 3141 bp mRNA linear VRT 19-APR-2016
DEFINITION PREDICTED: Sinocyclocheilus grahami syntaxin-16-like
(LOC107554194), transcript variant X2, mRNA.
ACCESSION XM_016236631
VERSION XM_016236631.1
DBLINK BioProject: PRJNA316320
KEYWORDS RefSeq.
SOURCE Sinocyclocheilus grahami
ORGANISM Sinocyclocheilus grahami
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_015505672.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Sinocyclocheilus grahami Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3141
/organism="Sinocyclocheilus grahami"
/mol_type="mRNA"
/isolate="Dianchi"
/db_xref="taxon:75366"
/chromosome="Unknown"
/sex="female"
/tissue_type="muscle"
/dev_stage="adult"
/geo_loc_name="China: Lake Dianchi, Yunnan"
/collection_date="2012-08-15"
/note="surface-dwelling"
gene 1..3141
/gene="LOC107554194"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:107554194"
CDS 321..1283
/gene="LOC107554194"
/codon_start=1
/product="syntaxin-16-like isoform X2"
/protein_id="XP_016092117.1"
/db_xref="GeneID:107554194"
/translation="MATRRLTDAFLLMRNNAIQNRQILAEQVSTYDPRRTLSTRSNAA
LADDRMALVSGISLDPEAAIGVTKRLPPKWVEGVDEIQYEITRIRQKMKELASLHDKH
MNRPTLDDSSEEEHAIEITTQEITQMFHRCQRAVTGLQTQSRHCTEQENRLLTNVVSS
LAQSLQELSINFRHTQSSYLKRMKNREERSKHFFDSGPLVEEDEDIALYDRGFTDDQL
VLVQQNTVVVDEREREIRQIVQSISDLNEIFRDLAGMVVEQGTVLDRIDFNVEQACVK
TEEGLQQLQKAEQYQKKNRKMLVILILFVIVVVLILILFGTKFR"
misc_feature 525..1208
/gene="LOC107554194"
/note="t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion]; Region: COG5325"
/db_xref="CDD:227635"
misc_feature 1002..1178
/gene="LOC107554194"
/note="SNARE motif of syntaxin 16; Region:
SNARE_syntaxin16; cd15845"
/db_xref="CDD:277198"
misc_feature order(1005..1007,1011..1016,1020..1037,1041..1049,
1053..1058,1062..1070,1074..1079,1083..1091,1095..1100,
1104..1121,1125..1142,1146..1163,1167..1175)
/gene="LOC107554194"
/note="heterotetramer interface [polypeptide binding];
other site"
/db_xref="CDD:277198"
misc_feature 1095..1097
/gene="LOC107554194"
/note="zero layer; other site"
/db_xref="CDD:277198"
ORIGIN
1 cgtgttccac ctcacggaag tcacagagat gatccattag cgccctaaaa ccaagcgttg
61 tcggtcttgt aatgttgcgg tactccacag gatacagact caggactgtc tcggtctaaa
121 agagagccgg tgttgtccgg aaactctcga aaccggaggc gctgagttgg tgggcgagcc
181 tgtctgccgt tttgcaggct agctcgctag tcaagtagcc gtccagctgc cttggcgacg
241 agctgagtaa ctaatctaaa gacagccgtc gaggcggctt gcagttattt ccttttacgg
301 tcgccttgta gtgcgtagcc atggcaactc ggcgactgac cgatgccttc ttattaatgc
361 ggaacaatgc aatccaaaac cggcagattt tggctgagca agtgagtaca tacgaccccc
421 gtcgtactct gagtacacgt agcaatgctg cgttggccga tgaccgtatg gctctggtgt
481 caggcatcag tttggatcca gaggccgcta ttggtgtcac gaagagactc ccacctaaat
541 gggtggaggg agtggatgag attcagtatg aaatcacacg tattcgtcag aagatgaagg
601 aactggccag tctgcacgac aaacacatga accggcccac gctggatgac agcagtgaag
661 aggagcacgc catcgagatc actacacagg aaattacaca gatgtttcac aggtgccagc
721 gggctgtgac ggggctccag actcagagtc gtcattgtac agagcaagaa aaccggctgt
781 tgactaatgt ggtctcctca ctggcccaga gccttcaaga actgtcaatc aacttcagac
841 acacacagtc aagctacctg aaacggatga aaaaccgtga agaaaggtcc aagcactttt
901 ttgactctgg tcctcttgtg gaggaagatg aagatattgc gctatatgac agaggattta
961 cagatgacca actagtgctg gttcagcaaa acacagtggt ggtagacgag cgagagagag
1021 aaattcgaca aattgttcag tccatctctg accttaatga gatatttaga gatcttgctg
1081 gaatggttgt tgaacagggc acagtcctcg acagaatcga cttcaatgtg gagcaagctt
1141 gtgtcaaaac agaggagggt ctgcagcagt tgcagaaggc tgaacagtac cagaagaaaa
1201 accgcaagat gctggtcatt ttaattctct ttgtcatagt tgttgttcta atccttattc
1261 tgttcgggac aaagtttaga tgaataattc catggcctct aggagggatc tacctgtatg
1321 tatgagagaa actgatgtgt gtgtgaagaa ggtttagaag gtgcttccgt tttaaaatac
1381 tacaccacaa agtgaagata aggacgcccc ctgctgacca acaagtgcag tgtgcggaga
1441 catttgtgtg tttatttctg ttgtgagagc gtaagtactc gggttccttt cagagggcca
1501 tttttcttca ttttttcaca caagcacagt aattaggagt ttggatgtga tatggcagca
1561 tgttcaatcc caactgccct tgtcgtctaa tttaaagagt aaacaggaag atgatgggaa
1621 agattaggaa tcctcggaag atgatcatat atgcttgggt gaatttcttc aaaataatgt
1681 ccaggtcata tttttttgct agtttccctc tcaactctca ttactgtaat gcagaattaa
1741 atgatttaaa tcaaaagtac agttgcagta ttacagtatt tgtttactgt ataatagtgg
1801 tacaaatcta atgggaatca ccattgagaa taatggaaag taaattagaa tacgttaaag
1861 taaatgagac tttagggggg attgggcatg gtcatgaaaa taatttcatg atgcatattc
1921 tttatatata tatgtattca tttgaatatg gggttaaatg tcacctgaac gtgtttccta
1981 aagattcacc cactttcttg gtttcagtag tgagcatcta cagtgaaacc tgtcataaac
2041 tgccttcgaa tcagaccttg cttgtaaggt taggatgtgt gtatttgatg caagcccaag
2101 atgacattat aaactctgtt ttcctgtaat ttaatctgac attttgctgt gtatatgtgt
2161 gtgtttgaga ggagacgcat tgacactcca gtcaaccacg acagaaactg aggaatgagg
2221 aacatatact caaagcattt accatgttca gtttttattg tttagttttt ttatgtggta
2281 aaatgaaaat cattgggatt atgacagggg ttgaatgaac tgaatgttac attgtccttt
2341 acgaacgtcc attactgaga gttaattcct ctgttcacgt cagtggaggc gtttaatgca
2401 ccatcatgtg tttatctacg ttttaatgac agtgttgtta tgaaatcagt atcatttcag
2461 tgaaaagcgg gagtgattca tcaagatttt ttgattcact ccgttccttg ccttaaagag
2521 tgaacatttg tgtgctgaac ttggaatgtt tttaaagctt tccttgtcca tgtttcattg
2581 gctggtgttg tcactgttgt atccttcagt ctgacctttg aacttaaact gaactttgac
2641 cttcagtctc agactgaagc tcagtggggt cggctgactg actataacta ctgttccctg
2701 gacaagatga aataatttat tttagatgca aacacgtgta tagagtttat ggagttctat
2761 tgttgtccgt tggtagtcca aagtccttta atttctttgt ttattattgt aatgatgatt
2821 tactttctaa aatcaattcc tgttggcttt tgtgaagggt aattgcacca ctactgtatg
2881 atggggtaaa atcacgttgt tgaccatatt attttataaa tacagagaca gtttattctt
2941 gttattttag aaggtttgaa aaaatataac tgcccattca aggcttaaat ccatttcaag
3001 tgatttattc catggttttg tgatttttca catggttttt atatgtgaat ataatatttt
3061 tctgccatta cggtactact gtatgctata tgaaccttct gtaaacgctg aacaggtttc
3121 taatgaaatt aaaacaaaca a
//