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KEGG   Rhincodon typus (whale shark): 109919800
Entry
109919800         CDS       T06055                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03320  PPAR signaling pathway
rtp04148  Efferocytosis
rtp04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    109919800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rtp03000]
    109919800
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rtp03310]
    109919800
Transcription factors [BR:rtp03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    109919800
Nuclear receptors [BR:rtp03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   109919800
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 109919800
NCBI-ProteinID: XP_048469473
Position
28:complement(41565712..41636902)
AA seq 456 aa
MNCDSDGAAMNAPSLHPQMMGSGVSPTINSPGQLHSPISTLNSPVNGLSSPFSVISSPLG
PHTISIPSSHGMGYGGQSPQINSSMNSVSSTEDVKPPLGINGVLKISPHSSNCPLSLTKH
ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQ
KCLAMGMKREGMDADFRAVQEERQRGKDRNENEVESTSSANEDMPVEKIVEAELAVEPKT
ETYIDSSLGMASSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWN
ELLIASFSHRSITVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTE
LGCLRAIVLFNPDAKGLSNPGEVEALREKVYASLEGYCKQKYPEQPGRFAKLLLRLPALR
SIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgaattgtgattccgacggagcagcgatgaatgcaccttctcttcacccccagatgatg
ggctctggggtcagccccaccatcaactcccctggacagctacattcaccaataagcact
ttgaactctccagtgaatggactgagctctcccttctcagttatcagctcacctctggga
ccccacacaatatccatcccttcatctcatggcatgggctatggggggcagagtccgcag
atcaactcgtccatgaattcggtcagcagtacggaggatgtgaaaccacctttgggaatt
aatggtgtgcttaaaatatcacctcattcctcaaactgtccactttctctcaccaagcac
atctgcgccatctgtggggacaggtcttcaggcaaacattatggtgtttacagctgtgaa
ggttgtaaagggttcttcaaacgcacggtgcgcaaagaccttacctacacttgccgtgac
aacaaggactgtatcatcgacaagcgccagcgtaaccggtgccagtactgccgctatcag
aaatgtctagccatggggatgaagcgggaaggtatggacgcagacttcagagcggtccag
gaggagagacagcgaggtaaggacaggaatgagaacgaggtggagtcaacaagcagtgcc
aatgaggacatgccagtggagaagatagtggaggctgagctggctgtcgagcccaagact
gagacttacatcgactccagcctcggcatggccagcagctcgccaaacgacccagtcacc
aacatctgccaagcagctgacaagcaactgttcacacttgtcgagtgggccaagaggatc
ccacatttctccgagctccctctggacgaccaggttatcctcttgcgggcaggttggaat
gaactgctgattgcttcattctctcaccgttccatcactgtgagagatggcattctactg
gcaaccggtctccacgtgcacaggaacagtgcgcacagcgctggggtgggagctatcttc
gacagagttctgacagaacttgtgtctaaaatgcgtgatatgcaaatggacaagacagag
ctgggctgtttgcgagcaattgtcctcttcaatccagatgcaaaaggcctgtccaatcct
ggggaggtggaggctctccgtgaaaaagtgtatgcttcgctagaaggatactgcaaacag
aaatacccagagcaacccggcaggtttgctaagctcctcctccgattgccagcccttcgc
tctattggactgaagtgtctggaacacctgttcttcttcaagctgattggagacaccccg
attgacactttcctcatggagatgctggaagcgcctcatcaaatcacctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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