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KEGG   Polyodon spathula (Mississippi paddlefish): 121322000
Entry
121322000         CDS       T07273                                 
Name
(RefSeq) collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510  Focal adhesion
pspa04512  ECM-receptor interaction
pspa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121322000
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121322000
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pspa04147]
    121322000
   00536 Glycosaminoglycan binding proteins [BR:pspa00536]
    121322000
Exosome [BR:pspa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121322000
Glycosaminoglycan binding proteins [BR:pspa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121322000
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   121322000
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 121322000
NCBI-ProteinID: XP_041117352
Position
10:23190773..23231373
AA seq 1012 aa
MLLKLLLPCLLFGALNQAQQEPVKDCSVQIKCPINVYFTIDTSESIALQFLPPGGLVNQI
KAFSEVFVKKLQEELYKDHITITWEFGGLHFSDRVEIYSQITSNSNDYIQRLRSIEYLGR
GTFTDCALANMTSQVVAQASPDNRVRFAVVITDGHVTGSPCGGMKARAESARDAGIRLFS
VSPSINKYDSGLREISNSPAELYRNNYQATGITGEVHTETIDRIIKVMKHEAYSECYKLT
CLEKPGPPGPKGYRGQKGAKGDIGDEGPPGNKGRQGDPGIEGPIGYPGPKGFHGVKGEKG
ELGSEGKRGIAGLAGRNGTDGQKGKLGRIGAPGCKGDPGDKGLPGYPGDVGERGQEGDPG
SKGDPGRPGRDGPPGPPGEPGQMGERGGPGSPGFPGQKGIQGESGRAGPKGEPGRRGDPG
NKGGAGPTGPKGEKGDIGPEGQRGLPGEVGNKGAKGDLGLPGPRGSSGEIGGSGRNGSRG
DSGDVGQRGEPGAPGPKGDRGRTGFSYPGTRGPTGDRGDKGNPGPQGVRGEYGPKGDPGV
KGTGGDPGDPGPSGEPGLRGPQGEPGEPGDPGPEGDPGLTDCDVMTYVRETCGCCDCEKR
CGALDIVFVIDSSESVGLTNFTLEKNFVINVVSRLGSIAKDPKSDTGTRVGIVQYSHDNT
FEAIQLNDPRIDSLATFKDAVKRLQWIAGGTYTPSALRFAYDQLIKGSKRDKAKVFAVVI
TDGRYDPRDDEKLLQSLCSGDVIVNAIGIGDMFSRHQEDESLKSIACNDQSRVTGMNLFA
DLVAEEFIDKMEEVLCPDPFVVCPDLPCKTELAVAQCTQRPVDIVFLLDGSERVGLENFR
YARTFVEDVARRLILARREDDELNARMALLQYGSEAEQRVAFSLTHNLTVIADSLAQMKY
LDSSSNVGSAIIHAINNIVNDQRGRQRVARRNAELAFVFITDGITGSKSLSEAVTSMRKA
DVVPTVIAVGDDVDMDILLQIGLGDRAAIFREKAFSQLSRSSFFDHFIRWIC
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgctgttgaagcttctcctcccttgcctgctgttcggagctctgaaccaggctcagcag
gaacccgtgaaggattgctcagtccagatcaagtgtccgatcaacgtgtatttcaccatc
gacacatcagagagcatcgctctgcagtttcttcctccagggggcctggtgaatcagatc
aaggccttctcagaggtctttgtgaagaagctacaggaggagctgtacaaggaccacatc
acgatcacctgggagttcggggggctgcacttctccgatcgagtggagatctacagccag
atcaccagcaactccaatgattacatccagcgcctgcgcagtatcgagtacctgggccgg
ggcaccttcacggactgcgccctggccaacatgacctcccaggtggtggcccaggcctcc
ccggataaccgtgtgcgctttgcagtggtaatcactgatgggcatgtgacaggcagcccc
tgcgggggcatgaaggccagggcagagagtgccagggacgcagggattaggctcttttct
gtgtctcccagcattaacaagtacgattcgggtctgagggagatctccaacagccctgcc
gagctgtaccgcaacaactaccaggccaccgggatcacaggagaggtccacacggaaacc
atcgaccgcattatcaaagtcatgaaacatgaagcctattctgagtgttacaaactgact
tgcttggagaaaccagggccccctgggccaaagggctacagaggacagaagggtgcaaaa
ggagacatcggggacgaaggacctcctgggaacaaaggaagacaaggggatcccggtatt
gaaggtccaattggttaccctggccccaaggggtttcatggtgtgaaaggcgaaaagggg
gaactgggatctgaaggaaagaggggtattgcagggctggctgggcggaatggaacagat
ggacagaagggcaaacttggacgtatcggagctccgggctgcaaaggagatcctggtgac
aagggcctccctgggtatcctggtgatgttggagagaggggacaagaaggagaccctggt
tctaagggagaccccggccggccaggcagagatgggccccccgggccccctggagagcca
ggacagatgggagagcgaggaggtccaggatcccccggctttcctgggcagaaaggaata
cagggagaaagtggcagagctggacctaaaggagaaccggggcggagaggggaccctgga
aacaaaggcggtgctgggccgactggccccaaaggagagaagggagacattggccctgag
gggcagaggggacttcctggagaagtaggaaacaaaggagccaagggagacttgggactg
ccaggacctagaggcagttccggagaaatcggtggttcaggaagaaatggctcccgtgga
gattctggtgatgtgggacagagaggggaacctggagctccaggaccaaagggtgacagg
ggaagaacgggattcagctaccccggcacccgcggacccacgggtgatcgtggtgataaa
ggcaacccaggacctcagggagtacggggcgaatatggaccgaagggggaccctggtgtt
aagggcactggtggagacccgggtgatccaggaccttctggggagcctggactgcgagga
ccccaaggagaaccaggagagccaggagatcccggccctgaaggagatcctggcctgaca
gactgtgatgtcatgacctacgtcagagagacctgtggatgctgtgactgtgagaagcgc
tgtggggctctggatatcgtctttgttattgacagctctgagagtgtggggctcaccaac
ttcaccctggagaagaactttgtgatcaacgtggtgagcaggctgggctccatcgccaag
gaccccaaatcggacacaggcactcgcgttggcatcgtccagtacagccatgacaacacc
tttgaggccatccagctgaacgacccgcgcatcgactcgctggccaccttcaaggacgct
gtgaagaggctgcagtggatcgcggggggcacctacaccccctccgccctgcgcttcgcc
tacgaccagctgatcaaaggtagcaagcgcgacaaggccaaggttttcgctgtggtcatc
acagatgggcgctacgacccacgtgatgacgagaagctcctgcagtccctgtgcagcggc
gacgtcatcgtcaacgccatcggcatcggggacatgttcagccgtcaccaggaggacgag
agcctgaaatccattgcgtgcaatgatcagagccgcgtgaccgggatgaacctgtttgca
gacctggtagccgaggagttcatcgacaaaatggaggaggtgctgtgcccagatccattt
gttgtttgcccagatcttccctgcaaaacagagcttgccgtagcacagtgcacacagcgc
ccagtcgacatcgtcttcctgctggatggctcggagcgggttggcttggagaacttccgc
tacgcccgcaccttcgtggaggatgtggcacggcggctgatcctggcccgccgtgaggat
gacgagctgaacgcacgcatggccctgctgcagtacggcagtgaggccgagcagagagta
gccttctccctgacacacaacctcaccgtcatcgcggacagcctggcgcagatgaaatac
ctcgactcctcctccaacgtgggctccgccatcatccacgccatcaacaacatcgtcaat
gaccagagggggcgccagagagtcgcccggcgcaacgcggagcttgccttcgtcttcatc
acggacggcatcaccggcagtaagagcctctcagaggccgtcacctccatgcgcaaggcc
gatgttgttcccacggtgatcgccgtgggggacgatgtagacatggacatcctgctgcaa
atcggactgggagaccgggcggccatcttccgtgagaaagccttctcccagctctccagg
tccagcttcttcgatcatttcatcaggtggatttgttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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