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KEGG   Phocoena sinus (vaquita): 116755213
Entry
116755213         CDS       T07759                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03320  PPAR signaling pathway
psiu04148  Efferocytosis
psiu04151  PI3K-Akt signaling pathway
psiu04659  Th17 cell differentiation
psiu04919  Thyroid hormone signaling pathway
psiu04920  Adipocytokine signaling pathway
psiu04928  Parathyroid hormone synthesis, secretion and action
psiu04932  Non-alcoholic fatty liver disease
psiu04976  Bile secretion
psiu05160  Hepatitis C
psiu05200  Pathways in cancer
psiu05202  Transcriptional misregulation in cancer
psiu05207  Chemical carcinogenesis - receptor activation
psiu05216  Thyroid cancer
psiu05222  Small cell lung cancer
psiu05223  Non-small cell lung cancer
psiu05226  Gastric cancer
psiu05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    116755213 (RXRA)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    116755213 (RXRA)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    116755213 (RXRA)
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    116755213 (RXRA)
   04928 Parathyroid hormone synthesis, secretion and action
    116755213 (RXRA)
  09154 Digestive system
   04976 Bile secretion
    116755213 (RXRA)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116755213 (RXRA)
   05202 Transcriptional misregulation in cancer
    116755213 (RXRA)
   05207 Chemical carcinogenesis - receptor activation
    116755213 (RXRA)
  09162 Cancer: specific types
   05226 Gastric cancer
    116755213 (RXRA)
   05216 Thyroid cancer
    116755213 (RXRA)
   05222 Small cell lung cancer
    116755213 (RXRA)
   05223 Non-small cell lung cancer
    116755213 (RXRA)
  09172 Infectious disease: viral
   05160 Hepatitis C
    116755213 (RXRA)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    116755213 (RXRA)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    116755213 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:psiu03000]
    116755213 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:psiu03310]
    116755213 (RXRA)
Transcription factors [BR:psiu03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    116755213 (RXRA)
Nuclear receptors [BR:psiu03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   116755213 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 116755213
NCBI-ProteinID: XP_032490160
Ensembl: ENSPSNG00000008516
Position
6:2756809..2855447
AA seq 439 aa
MAAPSLHPSLGPGIGSSLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP
TLGFGTGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE
AVQEERQRGKDRAENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPND
PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG
ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL
SNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG
DTPIDTFLMEMLEAPHQMT
NT seq 1320 nt   +upstreamnt  +downstreamnt
atggccgccccctcgctgcacccctccctggggcccggcatcggctcctcgctcggctcc
ccgggacagctgcactcgcccatcagcaccctgagctcccccatcaacggcatgggcccg
cccttctcggtcatcagctcccccatgggcccccactccatgtccgtgcccaccacaccc
accctgggcttcggcaccggcagcccccagctcaactcgcccatgaaccccgtcagcagc
agcgaggacatcaagcccccgctgggcctcaacggcgtcctcaaagtcccggcccacccc
tcagggaacatggcgtccttcaccaagcacatctgtgctatctgcggggaccgctcctca
ggcaagcactatggggtgtacagctgcgagggctgcaagggcttcttcaagcggacggtg
cgcaaggacctgacctacacctgccgggacaacaaagactgcctgattgacaagcggcag
cggaaccggtgccagtactgccgctaccagaagtgcctggccatgggcatgaaacgcgaa
gctgttcaggaggaacggcagcggggcaaggaccgggctgagaacgaggtggagtccacg
agcagcgccaacgaggacatgccggtggagaagatcctggaggccgagctggccgtcgaa
cccaagaccgagacgtacgtggaggcaaacgtggggctgaaccccagctcgcccaatgac
cctgtcaccaacatctgccaagcggctgacaaacagctcttcaccctggtggagtgggcc
aagcggatcccgcacttctccgagctgcccctggacgaccaggtcatcctgctgcgggca
ggctggaacgagctgctcatcgcctccttctcccaccgctccatagccgtgaaggacggc
atcctcctggccaccgggctgcacgtccaccgcaatagcgcccacagcgcgggggtgggc
gccatctttgacagggtgctgacggagctggtgtccaagatgcgggacatgcagatggac
aagacggagctgggctgcctgcgcgccatcgtcctcttcaaccccgactccaaggggctc
tcaaacccggccgaggtggaggcgcttcgcgagaaggtctacgcgtccctggaggcgtac
tgcaaacacaagtaccccgagcagccaggaaggtttgcaaagctgctgcttcgtctgccg
gccctgcgctccatcggcctcaagtgcctggaacacctcttcttcttcaaactcatcggg
gacacgcccatcgacaccttcctcatggagatgctggaagccccgcaccaaatgacttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (18)   
   KEGG PATHWAY (18)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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