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KEGG   Phocoena sinus (vaquita): 116745554
Entry
116745554         CDS       T07759                                 
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
  KO
K04837  voltage-gated sodium channel type IV alpha
Organism
psiu  Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:psiu04040]
    116745554 (SCN4A)
Ion channels [BR:psiu04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   116745554 (SCN4A)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc IQ_SCN5A_C PKD_channel GPHH IQ
Other DBs
NCBI-GeneID: 116745554
NCBI-ProteinID: XP_032472252
Ensembl: ENSPSNG00000018145
Position
20:complement(44312740..44339797)
AA seq 1817 aa
MATSSLPTVVPLGPESLRPFTRESQAAIERRVMEEEARQQRNKQMEIEEPEQKPCSDLEA
GKSLPLIYGDPPPEVIGIPLEELDPYYSDKKTFIVLNKGKAIFRFSATPALYVLSPFSTL
RRCAIKVLIHSLFSMFIMVTILTNCVFMTMSDPPSWSKHVEYTFTGIYTFESLIKILARG
FCIEDFTFLRDPWNWLDFSVIMMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPFNDTNTTWYGNDTW
DGQESWASNSTFDWDAYINDEGNFYFLEGSNDALLCGNSSDAGRCPEGYECIKAGRNPNY
GYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILA
VVAMAYAEQNEATLAENQEKEEEFQQMLEKFKKQQEELGKAKAAQALEGREADEDPAHGK
DCNGSLDTSAGEKGPPRPSCSADSGISDAMEELEEAHQKCPPWWYKCSQKVLIWNCCTPW
MRFKNIVHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEQFDRVLNVGNLVFTGIFTAE
MVLKLIAMDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWP
TLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIAADCSLPRWHM
HDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVMVIGNLVVLNLFLALLLSS
FSADSLAASDEDGEMNNLQIAVTRIKWGVGFAKAFLVGLLHGKILSPKVIMLSLGGTGEA
GEAGEAGESVSEDEKKELPPEEDENKDLKKDNHILNHMGLADGPPRSIELDHLNFINNPY
LTIHVPIASEESDLEMPTEEETDTFSEPEDGKKPLQPLDGNSSVCSTADYKPPEEDPEEQ
AEESPEGEQPEECFTEACVQRFPCLYVDISQGRGKMWWTLRRACFKIVEHNWFETFIVFM
ILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFIMEMLLKWVAYGFKVYFTNAWCWL
DFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTTAGRFAISEVNNKSECESLMHTGQVRW
LNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPQYEVNIYMYLYFVIFII
FGSFFTLNLFIGVIIDNFNQQKKKFGGKDLFMTEEQKKYYNAMKKLGSKKPQKPIPRPQN
KIQGMVYDLVTQQAFDITIMILICLNMVTMMVETDDQSQLKVDILYNVNMVFIIIFTGEC
TLKMLALRQYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLR
LIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDMFNFE
TFGNSIICLFEITTSAGWDGLLSPILNSGPPDCDPALENPGTSVRGDCGNPSIGICFFCS
YIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKFDPDATQFIDYSRL
SDFVDTLQEPLRLAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALKET
MEEKFMAANPSKVSYEPITTTLKRKHEEVCAVKIQRAYRRHLLQRSVKQASYMYRHHRDS
SGDAAPEKEGLIADTMSKMYGPENGNSGLQSKGEWRGSTWDPRPALGLLSIRPTDTALPP
APPPGQTVRPGVKESLV
NT seq 5454 nt   +upstreamnt  +downstreamnt
atggccacctcatctctgcccacggtggtgcctctgggccctgagagcctgcgccccttc
acccgggagtcccaggcagccatagaacggcgggtgatggaggaggaggcccggcagcag
cggaacaagcagatggagattgaggagcccgagcagaagccgtgcagtgacctggaggct
ggcaagagcctgccccttatctatggggaccccccaccggaggtcattggcatccccctg
gaggaactggatccctactacagtgacaagaagaccttcatcgtgctcaacaagggcaag
gccatcttccgcttctctgccacacctgctctctacgtgctgagcccctttagcaccctc
agacgctgcgccatcaaggtgctcatccactcgctgttcagcatgttcatcatggtcacc
atcttgaccaactgcgtgttcatgaccatgagcgacccgccttcctggtctaagcatgtg
gagtacaccttcacggggatctacacctttgagtccctcatcaagatcctggcccgaggc
ttttgcatcgaagacttcacattcctccgggacccctggaactggctggacttcagcgtc
atcatgatggcgtacctgacggagtttgtggacttgggcaacatctcggccctgagaacc
ttccgggtgctgcgggccctgaaaaccatcacagtcatcccagggctgaagaccattgtg
ggagccctgatccagtcggtgaaaaagctgtcagatgtgatgatactcaccgtcttctgc
ctgagtgtctttgccctggtggggctgcagctcttcatgggaaacctgcggcagaagtgt
gtgcgctggcccccgcccttcaatgacaccaacaccacgtggtacggcaacgacacctgg
gatggccaggagagctgggccagcaactctacctttgactgggatgcctacatcaatgac
gaagggaacttctatttcctggaaggctccaatgacgccctgctctgtgggaacagcagc
gacgctgggcgctgccctgagggttatgagtgcatcaaggccggacggaaccccaactat
ggctacaccagctatgacaccttcagctgggccttcctggctctcttccgcctcatgaca
caggactattgggagaacctcttccagctgacccttcgagcagcgggcaagacctacatg
atcttcttcgtggtcatcattttcctgggctccttctacctcatcaacctgatcctggcg
gtggtggccatggcatacgctgagcagaacgaggccaccttggccgagaatcaggagaaa
gaagaagagtttcagcagatgctggagaaattcaaaaagcagcaggaagagctggggaag
gccaaggccgctcaggcgctggaaggcagggaggcagacgaggacccagcccacggcaaa
gactgcaacggcagcctggacacatcggcgggggagaaggggcccccaagacccagctgc
agcgcagacagcggcatctcagatgctatggaagagctggaagaggcccaccagaagtgc
ccaccatggtggtacaagtgttcccagaaagtgctcatatggaactgctgcaccccgtgg
atgaggttcaagaacatcgtccacttgatcgtcatggaccccttcgtggacctgggcatc
accatctgcattgtgctcaacaccctcttcatggccatggagcattaccccatgacggag
caatttgacagggtgctcaacgtgggcaacctggtcttcacgggcatcttcacagcagag
atggtgctgaagctcatcgccatggacccctatgagtacttccagcagggctggaacatc
ttcgacagtatcatcgtcaccctcagcctggtggaactgggcctggccaacgtgcagggg
ctgtcggtgctccgctccttccgtctgctgcgggtcttcaagctggccaagtcgtggcca
acgttgaacatgctcatcaagatcattggcaactcggtgggggcgctgggcaacctgacg
ctggtgctggccatcatcgtgttcatcttcgccgtggtgggcatgcagctgttcggcaag
agctacaaggagtgcgtgtgcaagatcgccgcggactgcagcctgccccggtggcacatg
cacgacttcttccactccttcctcatcgtcttccgcatcctgtgcggggagtggatcgag
accatgtgggactgcatggaggtggccggccaggccatgtgcctcaccgtcttcctcatg
gtcatggtcatcggcaacctggtggtcctgaacctcttcttggccctgctgctcagctcc
ttcagcgccgacagcctggcggcctcggacgaggatggcgagatgaacaacctgcagatc
gccgtcacgcgcatcaagtggggtgtcggcttcgccaaagccttcctcgtggggctgctg
catggcaagatcctgagccccaaggttatcatgctcagcctcggggggactggggaggct
ggcgaggccggcgaggctggggaaagtgtctcagaagatgagaagaaggagctaccgccc
gaggaggatgaaaacaaggacctcaagaaggacaatcatatcctgaaccacatgggcctg
gctgacggccctccccgcagcattgagctggaccacctcaacttcatcaacaacccctac
ctgaccatccacgtgcccatcgcctccgaggagtctgacctggagatgcccacagaggag
gaaacggacaccttctcggagcctgaggacggcaagaagccgctgcagcccctcgacgga
aactcctccgtctgcagcactgccgactacaagccccccgaggaggaccccgaggaacag
gccgaggagagccctgagggggagcagcctgaggagtgcttcaccgaggcctgtgtgcag
cgctttccctgcctctacgtggacatctcccagggccgagggaagatgtggtggaccctg
cgcagggcctgcttcaagatcgttgagcacaactggtttgagaccttcatcgtcttcatg
atcctgctcagcagtggagccttggccttcgaggacatctacatcgagcagcggagagtc
atccggaccatcctggaatacgcagacaaggtcttcacctacatcttcatcatggagatg
ctgctcaagtgggtggcctatggcttcaaggtgtacttcaccaacgcctggtgctggctc
gacttcctcatcgtggatgtctccatcatcagcctggtggccaactggctgggctactcg
gagctgggacccatcaaatccctgcggacactcagggctctgcgtcccctgagggcactg
tctcgattcgagggcatgagggtggtggtgaatgccctcctgggcgccatcccctccatc
atgaacgtgctgcttgtctgcctgatcttctggctcatcttcagcatcatgggcgtcaac
ctgtttgccggcaagttctactactgcgtgaacaccaccaccgccgggaggttcgccatc
tccgaggtcaacaacaagtccgagtgcgagagcctgatgcacacgggccaggtccgctgg
ctcaacgtcaaggtcaactacgacaacgtgggtctgggctacctctccctcctgcaggtg
gccaccttcaagggctggatggacatcatgtatgcagccgtggactcccgggagaaggag
gaacagccccagtacgaggtgaacatctacatgtacctctatttcgtcatcttcatcatc
ttcggctccttcttcaccctcaacctcttcattggcgtcatcatcgacaacttcaaccag
cagaagaagaagtttggagggaaagacctcttcatgacggaggaacagaagaaatactat
aacgccatgaagaagcttggctccaagaagcctcagaagccaattccccggccccagaac
aagatccagggcatggtgtacgacttggtgacgcagcaggcgttcgacatcacgattatg
atcctcatctgcctcaacatggtcaccatgatggtggagacggatgaccagagccagctc
aaagtggacatcctctacaacgtcaacatggtcttcatcatcatcttcacgggcgagtgc
acgctcaagatgttggccctgcgccagtactacttcaccatcggctggaacatcttcgac
tttgtggtcgtcatcctgtccattgtgggcctcgcactctctgacctgatccagaaatac
ttcgtgtcacccacgctgttccgtgtcatccgcctggcacggatcgggcgcgtcctacgg
ctgatccgaggggccaagggcatcaggacgctgctctttgctctcatgatgtcactgccc
gccctcttcaacatcggcctcctcctcttcctggtcatgttcatctactccatcttcggc
atgtccaacttcgcttacgtcaagaaggagtcgggcatcgacgacatgtttaacttcgag
accttcggcaacagtatcatctgcctctttgagatcaccacgtcagccggctgggacggg
cttctcagccccatcctcaacagcgggccccccgactgtgaccccgcgctggagaacccg
ggcaccagcgtcaggggcgactgcggcaacccctccatcggcatctgcttcttctgcagc
tacatcatcatctccttcctcatcgtggtcaacatgtacatcgccatcatcctggagaac
ttcaacgtggccacggaggagagcagcgagcctctcggggaggatgacttcgagatgttc
tacgagacgtgggagaagtttgaccccgacgccacgcagttcatcgactacagccgcctc
tccgacttcgtggacaccctgcaggagccgctgaggctcgccaagcccaacaagatcaag
ctcatcacactggacctgcccatggtgccaggggacaagatccactgcctggacatcctc
tttgccctgaccaaagaggtcctgggagactctggggagatggatgccctcaaggagacc
atggaggagaagttcatggctgccaacccatccaaggtctcctacgagcccatcacaacc
accctcaagaggaagcacgaggaagtgtgcgctgtcaagatccagagggcctaccgccgg
cacctgctgcagcgctccgtgaagcaggcttcctacatgtaccgccaccatcgggacagc
agcggggacgcagcacccgagaaggaggggctgattgctgacaccatgagcaagatgtat
ggccctgagaatgggaacagcggtttgcagagcaagggggagtggaggggctcgacatgg
gaccccagacctgccctggggctcctgtccatcagacccacagacacagccctccctccc
gccccacccccggggcagacggtgcgcccaggggtcaaagagtctcttgtctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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