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KEGG   Podarcis raffonei (Aeolian wall lizard): 128398275
Entry
128398275         CDS       T09310                                 
Name
(RefSeq) collagen alpha-6(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
praf  Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510  Focal adhesion
praf04512  ECM-receptor interaction
praf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:praf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128398275
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128398275
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:praf04147]
    128398275
   00536 Glycosaminoglycan binding proteins [BR:praf00536]
    128398275
Exosome [BR:praf04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   128398275
Glycosaminoglycan binding proteins [BR:praf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128398275
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   128398275
SSDB
Motif
Pfam: VWA VWA_2 Collagen vWA_SIBA-E VWA_CoxE DJ-1_PfpI
Other DBs
NCBI-GeneID: 128398275
NCBI-ProteinID: XP_053215124
Position
12:46004922..46069299
AA seq 1772 aa
MKMFLIFLLVTLGAQTSTAQRPASESADIVLLIDSSDALGRRAFPSVKSFVNRIINSLPI
GPNRYRIALVQYSDDVKVEFQLDDYKAKTPMLNQLKKVSFKGGPLRTGNAIRRVHETFFR
SPRKDRNQIVVVTTSATSDDPVEEAASRLRRDGIKIIALGIQEAVPQALQSIATPPFHYK
FGTPRDLLAFSQNMSEVIGKAAQMEIFTATPTPAPPSVTESVTGTVGPVSPEALTCHEDS
VADVVFIVDEGVSQASAEFIREFLQNTVNSLDVKEACIRMGIVTYSTEAKVLTSLRDETK
KTDILQKIRSFSPKEGKSHLGAAINMTTKRVFADRRRSVEKVATIITHRPSDDDIRGAAS
LISRAGVTVFAIGVERADAAQLTQIVSYPSEPNIIKLTEFSDLPKQDKTFHKKLFNQIKD
RLYVQPEITKQLKSGCMETERADIYFLLDDSSSIEVNESEKMRTFVMEAIKLFTIGPDNV
RFGVVQYSKNTILPIRLGQHTTRISLEKEMNRIRHRALPETNTGAAINFTRPLFKDARQQ
CRGNVPCYLIVLTDGKAHDDVKVAAQLLRQANVNIYAIGVKDANKEELFHIAGSTSRVYF
VQQFEALEKIKNVVVRDICNEKACEVRKVDVMFLVDSSGSIHPEDFAKMQNFMAEFVKKS
NIGPEQMCVGAVQFSGTTEEKFPLNRYLTKNDIIDAIGSMSLIGANTLTGEALVFISDYF
EAAKGARPGVHKVLILITDGEAQDEVKTPATALRDKGITIYSVGVFNANKTQLEEISGKP
ERVFYVENFDVLNKVQNELRFGVCNPEEECKRLERLDIVFVIDSSGSIGPSNYDLMKNFM
IGIVNKSNVGKELVQFGALKYSDDPHILFDLDDHSTQSAVIDAIRSDTHLGGNTYTAEAL
EHSKGLFTEARGSRKHRGVSQILMVITDGESHDTERLEEVSKKLRDDKITILAIGIKEAK
LDELLTMAGSEENQYFVDTFEGLQNISKKLSDNLCNNSRPECEIQTDLVFLIDGSGSIPP
EDFERMKVFLKNLLDLIDYNDNVRVGMAQFADRYEEEFGLGAYQNKPELQEKIISVTMMD
GGNTFIGEALKGVKAFFNSTRRRIPRHTVPKLLLITDGISDDPVADSARALAADGVEIHA
IGVGKIDRAKLMEITDDSDRIYSVANFTELPSILTRVTKEVCQDKSEAICFMDVVIGFDI
SSQKAGDHIFNEQHLLETYLPDILKDFTSYGAVSCNKGTKTQFSVANLIENTDTPFLRTL
QVDHEKILEDLQKVRLNGPSYLNVEFLDSLWNVFENVSGNHMRSQVLLVFSDGLDADKEV
LKKKSEELRKKGLDGIITVALEGVTNFADLLDIEFGKGFGYNKQLNMGTQNIASRLFSFV
TQIAERTCCCKFCTCMPEEGPRGPKGKIGSQGSTGLSGHRGYTGEDGEPGFRGFPGPEGP
QGYRGDPGSQGMKGLQGRTGRKGEKGDDGLDGIQGEEGSHGLPGHKGEKGDAGLQGSPGP
SGLPGEEGQKGFQGDSGDSGADNDVEGAKGYKGSQGCRGEKGSQGITGENGSPGNTGPEG
QRGLPGPPGTKGNPGPRGLEGKQGFEGQQGTSGIPGEKGEKGHSGNKGLPGNLGIPGPKG
NQGKPGLKGNEGEPGDTGRKGPAGPRGPQGMRGDEGIPGYGAEGKKGSKGQEGFPGDIGL
QGECGDPGLPGKPGPKGVRGRMGTPGLKGEPGGRGAWGPPGRPGPKGEKGLSSFSPCELT
EYLREHSRKYCPILNFDTERRKNILYRARLIY
NT seq 5319 nt   +upstreamnt  +downstreamnt
atgaagatgtttctaatttttcttctggttactctcggagcacaaacttccacagcacag
agacctgcctctgaatctgcagatattgtccttttgatcgacagctctgatgcccttggg
agaagggcttttccatctgtgaaatcctttgttaacagaatcatcaacagcctcccaatt
ggcccaaacaggtatcgaattgcactcgtgcaatacagtgatgacgtgaaggttgaattc
cagctggatgactacaaagcaaagacccccatgctcaaccaactcaaaaaggtttcgttc
aaaggtggacctttaaggaccgggaacgccatacgaagggtccacgagacgtttttcaga
agcccgagaaaagacagaaaccagattgtggtggtcacaacttcagcgacgtcggatgat
cccgtggaagaagcagcaagccgactgaggcgggatggaataaaaataatcgcattagga
atccaggaggcggtgcctcaagcgctgcagtcaatagctactcctccattccactataaa
tttggtacaccaagggatctcctagcgttttctcaaaacatgtctgaagttattggaaag
gcagcacaaatggagattttcacggccacgccaacgcctgcacctccaagtgtgacagaa
agtgtcacaggaaccgttggtcctgtatctccagaagctctgacgtgccatgaggactca
gttgcagacgtcgtatttattgtggatgagggtgtttcacaggcgagtgctgaatttatc
agagaattcttgcagaacacagtaaactctctcgacgtgaaggaagcgtgcataaggatg
ggcattgtgacgtacagcacggaggccaaagtattaacttctctgagagacgaaacgaag
aaaacggacattcttcagaaaattaggagcttttcccctaaagaagggaaatctcatttg
ggtgctgccattaatatgaccacaaaacgtgtttttgccgacaggagaaggagtgtagag
aaggtagccaccattatcacccacaggccctcggatgatgatataaggggggcagcttct
ctcattagcagggctggtgtgactgtctttgccatcggcgttgaaagagcagacgccgct
cagttgactcagattgtgtcatatccgtcagaaccgaatattatcaaactgacagaattt
tccgacctgcccaaacaggacaagacgtttcacaagaaactcttcaaccaaataaaagac
agactctatgtccaacctgaaataacaaaacagctcaaatcaggatgtatggagacagaa
agggctgatatttattttctccttgatgattcgtcaagcattgaagtcaatgagtccgag
aagatgaggacttttgtgatggaagctattaagctgtttactataggacctgataatgtt
cgatttggagttgttcagtattcaaaaaatactatcttaccaattagacttggtcagcac
accacccgcatcagtttagaaaaagaaatgaatcgtatcagacatagagcactaccagaa
acaaatacaggagcagctataaatttcacacggccattgtttaaggacgcaagacaacag
tgccgcggcaatgttccctgctatctcattgtgctgacggatgggaaagcacatgatgac
gtgaaggtagctgctcagctgctgagacaggcaaatgtcaacatttacgccattggagtg
aaagacgccaacaaagaagagttgtttcatattgcgggctcaacgtcaagggtttacttt
gtgcaacagttcgaagccttggaaaaaataaaaaatgttgttgttcgggacatatgcaat
gaaaaggcctgtgaggtgaggaaggttgatgtcatgttcctagtggacagctctggtagc
atacaccctgaggactttgcaaaaatgcagaacttcatggcagagtttgtgaaaaaatct
aacattggcccagaacaaatgtgtgttggtgctgtgcagttcagtggcacaacagaagaa
aagttccccctcaataggtacttgacaaagaatgatatcattgatgctattgggagtatg
tctcttatcggggccaacacactcactggagaagcactggtatttatttccgattatttt
gaggctgccaaaggggcgcggcctggcgtccacaaagttctcatcttgatcactgatggg
gaagcacaagatgaggtgaaaactccagccacagccctgagagataaaggcatcacaatc
tactcagttggtgtttttaatgccaataaaactcagcttgaagagatcagtgggaaacct
gagagggtgttttacgtggagaactttgatgttttgaataaggtacagaatgagctcagg
tttggtgtgtgcaaccctgaagaggagtgcaaaaggctagagcgtttggatatagtattt
gtaattgatagttctggcagcattggtccttccaactatgatctcatgaagaacttcatg
attggcattgtgaataaatctaatgttggcaaggagcttgttcagttcggcgctctcaaa
tattcagatgatccacacattctgtttgatctcgatgaccacagtacacaatcagcagtc
attgatgctatcaggagtgacacacatctagggggcaatacatacacagctgaggctctt
gaacattcaaaaggtcttttcactgaggcaaggggcagccgcaaacacaggggcgtttcc
caaattcttatggtcataaccgatggtgaatcccacgatacagaaagacttgaggaagtg
tctaaaaaactccgggatgataaaattactatcttggccattgggataaaagaagccaaa
cttgatgaacttttgactatggctggatcagaagaaaaccagtattttgtggacacattc
gaaggactgcaaaacatatccaagaaattatcagataatctatgcaacaattcaaggcca
gaatgtgagatccaaactgatcttgttttcctgattgatggttccggaagtataccccca
gaagacttcgagaggatgaaggtcttcctgaaaaacctgcttgatttaattgattataat
gacaacgtgcgagttggtatggcccaatttgctgaccgatatgaagaagaatttggtctg
ggcgcttatcagaacaaaccagaacttcaagaaaaaattattagcgttacaatgatggat
ggtggtaatacattcattggagaggctctcaaaggagtgaaggccttcttcaactccaca
agacgcagaatacctagacacaccgtgcccaaattgctgctaatcacagatggaatctct
gatgaccctgttgctgacagtgcaagagccctggctgccgatggtgttgagattcacgct
attggagtgggaaagattgaccgggcaaaactaatggagataacagatgactctgacaga
atatactctgtggcgaatttcacagaactgccaagtattctaactcgcgtaactaaggaa
gtgtgtcaagataaaagtgaagcaatatgttttatggatgtcgttattggattcgatatc
tcatctcagaaagcaggagaccatattttcaatgagcagcatcttttggagacttatctc
cctgatattttaaaagactttacatcttatggggctgtgagttgcaacaaaggaacaaaa
acacagttcagtgtggcaaatctaatagaaaatacagacacaccttttctgcggacactc
caagttgaccatgaaaaaatcctagaggatctccagaaagttaggctgaacggcccatca
tatctcaatgtcgaattcctagacagcctttggaatgtatttgaaaatgtatctggtaat
cacatgcgaagccaggttttgcttgttttctctgatggcttggatgctgacaaagaagta
cttaaaaagaaatcggaagaacttcgaaaaaagggactggatggaataataacagttgct
ctggaaggagttaccaactttgcagatcttctggatattgaatttggaaagggatttgga
tataacaagcaattaaacatgggtacacaaaatattgccagcaggctgttttcctttgtg
acacaaattgctgagagaacatgctgctgcaagttctgtacgtgtatgccagaggaaggg
ccccgtggaccaaaagggaaaattggatcacagggatctactggtttgtccggccatcgc
ggatatacaggagaggatggcgagccaggtttcagaggattccctgggccagagggaccc
caaggctataggggagacccaggcagtcaaggaatgaaggggctacaaggccgaactgga
agaaagggagagaaaggggatgatggacttgatggaatccagggagaagagggatcacat
ggactcccaggacacaaaggagagaagggggatgcaggcctgcagggcagcccaggacca
agtggacttcctggtgaggaaggtcagaaaggcttccagggagattctggagattctgga
gcggataatgatgtagaaggagcaaaaggttacaaaggttcacaagggtgcaggggagaa
aaaggatcgcaaggtattacgggcgagaatggatctccaggaaacactggaccagaggga
caaagaggacttccaggcccaccggggacaaaaggaaaccctggccccagaggtctggaa
ggaaaacaaggctttgaaggtcaacaggggacaagtggaattcctggtgagaaaggagag
aaaggacattcaggaaacaaaggtcttccgggaaacttgggaatcccaggccctaaagga
aatcaagggaaacctggactaaaaggaaatgaaggagaacctggggatactggaagaaaa
ggaccagcaggcccccgtggtccacaaggaatgaggggggatgagggaattcctggatat
ggtgcagaaggaaagaaaggatcaaagggacaagaaggctttccgggagacattggactg
cagggcgaatgtggagatccaggccttcctgggaaaccaggaccaaaaggcgttagggga
agaatgggtaccccaggattaaaaggtgaaccaggtggccgaggagcctggggtcctcca
ggacgtccgggtccaaaaggcgagaagggcctgtcctcattttcgccttgtgaactcact
gagtatctgcgtgaacacagccgtaagtactgcccgattttgaattttgataccgaaagg
aggaagaacatcctatacagagcccggttaatatattga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (10)   

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